Strain Fitness in Sphingobium sp. HT1-2 around GFF679

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF678 and GFF679 are separated by 63 nucleotidesGFF679 and GFF680 are separated by 61 nucleotides GFF678 - Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1), at 670,187 to 671,239 GFF678 GFF679 - hypothetical protein, at 671,303 to 671,680 GFF679 GFF680 - Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1), at 671,742 to 673,640 GFF680 Position (kb) 671 672Strain fitness (log2 ratio) -1 0 1 2at 671.250 kb on - strandat 671.330 kb on - strandat 671.330 kb on - strandat 671.533 kb on - strand, within GFF679at 671.583 kb on - strand, within GFF679at 671.630 kb on - strand, within GFF679at 671.651 kb on - strandat 671.690 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate
remove
671,250 - +2.5
671,330 - -0.5
671,330 - +0.7
671,533 - GFF679 0.61 -0.4
671,583 - GFF679 0.74 -1.0
671,630 - GFF679 0.87 -0.3
671,651 - -0.2
671,690 - -1.0

Or see this region's nucleotide sequence