Strain Fitness in Sphingobium sp. HT1-2 around GFF649

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
646,231	-				-0.6
646,244	-		GFF647	0.11	-1.7
646,244	-		GFF647	0.11	+1.1
646,279	-		GFF647	0.18	+0.1
646,280	+		GFF647	0.18	+0.6
646,280	+		GFF647	0.18	+0.0
646,280	+		GFF647	0.18	-2.0
646,288	-		GFF647	0.20	+0.2
646,288	-		GFF647	0.20	+0.3
646,307	-		GFF647	0.24	-0.6
646,324	+		GFF647	0.27	+0.3
646,342	-		GFF647	0.31	-0.8
646,342	-		GFF647	0.31	-1.3
646,342	-		GFF647	0.31	+0.3
646,346	-		GFF647	0.32	+1.1
646,374	+		GFF647	0.38	-0.9
646,375	+		GFF647	0.38	-0.1
646,375	-		GFF647	0.38	-0.5
646,375	-		GFF647	0.38	+0.5
646,382	-		GFF647	0.40	-1.2
646,382	-		GFF647	0.40	+0.4
646,386	+		GFF647	0.40	+0.7
646,386	-		GFF647	0.40	-0.6
646,408	+		GFF647	0.45	+0.4
646,408	+		GFF647	0.45	-0.6
646,416	-		GFF647	0.47	-1.3
646,416	-		GFF647	0.47	-1.3
646,448	+		GFF647	0.53	+0.3
646,448	+		GFF647	0.53	-0.3
646,456	-		GFF647	0.55	-0.5
646,456	-		GFF647	0.55	+0.7
646,486	-		GFF647	0.61	-1.2
646,506	+		GFF647	0.66	-0.3
646,509	-		GFF647	0.66	-1.0
646,509	-		GFF647	0.66	+0.0
646,511	+		GFF647	0.67	+0.4
646,513	+		GFF647	0.67	-0.9
646,519	-		GFF647	0.68	-0.2
646,519	-		GFF647	0.68	-1.8
646,519	-		GFF647	0.68	+1.0
646,519	-		GFF647	0.68	-0.4
646,524	-		GFF647	0.69	-0.1
646,532	+		GFF647	0.71	-0.7
646,540	-		GFF647	0.73	-0.3
646,540	-		GFF647	0.73	-0.2
646,546	+		GFF647	0.74	+0.0
646,553	+		GFF647	0.75	-0.9
646,561	-		GFF647	0.77	+0.9
646,613	+		GFF647	0.88	+0.2
646,613	+		GFF647	0.88	-0.3
646,619	-		GFF647	0.89	-0.7
646,627	-				-0.3
646,631	+				+0.6
646,636	+				-0.3
646,638	+				-0.7
646,646	-				-0.1
646,652	-				-1.6
646,652	-				-0.2
646,659	+				+0.6
646,679	+				-0.7
646,679	-				-0.5
646,681	+				-1.4
646,704	-				-1.0
646,719	-				+0.2
646,723	+		GFF648	0.10	+0.2
646,723	+		GFF648	0.10	+1.4
646,723	+		GFF648	0.10	-0.5
646,723	+		GFF648	0.10	-0.2
646,723	+		GFF648	0.10	-0.2
646,723	+		GFF648	0.10	-2.5
646,723	+		GFF648	0.10	+1.5
646,728	+		GFF648	0.11	+0.9
646,728	+		GFF648	0.11	-0.8
646,728	+		GFF648	0.11	-1.5
646,728	+		GFF648	0.11	-1.2
646,728	+		GFF648	0.11	-1.0
646,728	+		GFF648	0.11	+0.6
646,728	+		GFF648	0.11	-1.3
646,728	+		GFF648	0.11	-0.1
646,728	+		GFF648	0.11	+0.9
646,728	+		GFF648	0.11	-0.0
646,728	+		GFF648	0.11	-0.4
646,728	+		GFF648	0.11	+0.1
646,728	+		GFF648	0.11	-1.0
646,728	+		GFF648	0.11	-0.0
646,728	+		GFF648	0.11	+1.0
646,728	+		GFF648	0.11	+0.0
646,728	+		GFF648	0.11	-0.6
646,729	-		GFF648	0.11	+0.5
646,731	-		GFF648	0.12	-1.5
646,731	-		GFF648	0.12	-1.4
646,731	-		GFF648	0.12	-0.5
646,731	-		GFF648	0.12	+0.1
646,731	-		GFF648	0.12	-0.7
646,731	-		GFF648	0.12	-0.7
646,736	-		GFF648	0.13	+0.7
646,736	-		GFF648	0.13	-1.2
646,736	-		GFF648	0.13	-0.1
646,736	-		GFF648	0.13	+1.2
646,736	-		GFF648	0.13	-1.4
646,736	-		GFF648	0.13	+0.1
646,736	-		GFF648	0.13	-0.9
646,736	-		GFF648	0.13	+0.5
646,736	-		GFF648	0.13	+1.6
646,736	-		GFF648	0.13	+0.5
646,736	-		GFF648	0.13	-0.2
646,736	-		GFF648	0.13	-0.3
646,736	-		GFF648	0.13	-0.8
646,736	-		GFF648	0.13	-0.3
646,736	-		GFF648	0.13	+0.2
646,736	-		GFF648	0.13	-2.4
646,736	-		GFF648	0.13	-0.7
646,736	-		GFF648	0.13	-0.5
646,748	+		GFF648	0.15	-0.2
646,753	+		GFF648	0.16	-1.3
646,756	-		GFF648	0.16	-0.7
646,771	-		GFF648	0.19	-1.3
646,771	-		GFF648	0.19	+0.5
646,805	-		GFF648	0.25	-1.5
646,828	+		GFF648	0.29	-1.9
646,833	+		GFF648	0.30	+0.3
646,836	-		GFF648	0.31	+0.7
646,842	+		GFF648	0.32	+0.3
646,859	-		GFF648	0.35	+1.0
646,866	-		GFF648	0.36	+0.6
646,982	-		GFF648	0.57	+0.2
647,006	+		GFF648	0.62	-0.9
647,011	+		GFF648	0.62	-0.3
647,014	-		GFF648	0.63	-0.3
647,014	-		GFF648	0.63	+1.1
647,036	-		GFF648	0.67	-0.5
647,056	-		GFF648	0.71	-1.9
647,069	+		GFF648	0.73	-0.7
647,069	+		GFF648	0.73	+0.4
647,069	+		GFF648	0.73	+0.7
647,069	+		GFF648	0.73	+0.3
647,073	-		GFF648	0.74	+0.3
647,077	-		GFF648	0.74	-1.3
647,077	-		GFF648	0.74	+1.2
647,077	-		GFF648	0.74	+0.2
647,117	+		GFF648	0.82	+0.8
647,117	+		GFF648	0.82	-0.2
647,117	+		GFF648	0.82	-0.3
647,121	+		GFF648	0.82	-0.4
647,125	-		GFF648	0.83	-0.4
647,125	-		GFF648	0.83	-0.6
647,125	-		GFF648	0.83	-0.6
647,125	-		GFF648	0.83	+1.3
647,125	-		GFF648	0.83	-1.1
647,130	-		GFF648	0.84	-0.5
647,138	+		GFF648	0.86	-1.9
647,145	-		GFF648	0.87	+0.2
647,203	-				-0.4
647,213	-				-0.3
647,213	-				+0.0
647,220	-				-0.8
647,224	+				-0.2
647,232	-				-0.2
647,232	-				-1.8
647,257	+				-0.3
647,257	+				+0.5
647,257	+				-1.0
647,257	+				+1.1
647,257	+				-0.2
647,257	+				-2.1
647,257	+				+0.3
647,257	+				-0.7
647,257	+				+0.4
647,257	+				-0.6
647,257	+				+0.5
647,257	+				-1.5
647,257	+				-0.7
647,257	+				-0.8
647,257	+				+0.0
647,257	+				+1.2
647,257	+				-0.2
647,257	+				-0.4
647,257	+				+0.1
647,257	+				+0.3
647,257	+				+0.2
647,257	+				+2.3
647,257	+				-0.9
647,257	+				-0.1
647,257	+				+1.0
647,257	+				-2.6
647,257	+				+0.3
647,257	+				-1.2
647,257	+				-1.3
647,257	+				+0.1
647,257	+				-1.1
647,257	+				+0.3
647,257	+				+0.0
647,257	+				-0.3
647,257	+				-0.2
647,265	-				-0.7
647,265	-				-0.8
647,265	-				-1.1
647,265	-				+1.2
647,265	-				+0.9
647,265	-				-0.6
647,265	-				+0.6
647,265	-				-0.4
647,265	-				+0.6
647,265	-				-0.5
647,265	-				+0.8
647,265	-				+0.5
647,265	-				-0.2
647,265	-				-0.3
647,265	-				+1.0
647,265	-				-1.0
647,265	-				-1.0
647,265	-				+1.3
647,265	-				-1.4
647,265	-				-0.8
647,265	-				-0.5
647,265	-				+1.0
647,265	-				+0.0
647,265	-				-0.6
647,265	-				+0.0
647,265	-				+0.3
647,265	-				-1.7
647,265	-				+0.2
647,265	-				-1.0
647,265	-				-2.0
647,265	-				-0.1
647,265	-				+0.5
647,274	+				-0.6
647,274	+				+0.4
647,277	+				+1.2
647,280	-				-0.4
647,282	-				-0.7
647,284	+				-1.0
647,285	-				+0.1
647,306	+				-0.8
647,315	+		GFF649	0.11	-0.0
647,349	+		GFF649	0.15	-0.3
647,349	+		GFF649	0.15	-1.3
647,362	+		GFF649	0.17	-0.7
647,370	-		GFF649	0.18	-0.5
647,377	+		GFF649	0.19	-1.8
647,381	-		GFF649	0.19	-0.1
647,384	-		GFF649	0.19	-0.1
647,412	+		GFF649	0.23	+0.3
647,425	-		GFF649	0.24	-2.5
647,429	+		GFF649	0.25	-0.3
647,431	-		GFF649	0.25	+0.3
647,434	+		GFF649	0.26	+1.0
647,434	+		GFF649	0.26	+0.0
647,435	-		GFF649	0.26	+0.4
647,435	-		GFF649	0.26	+0.1
647,437	-		GFF649	0.26	-0.7
647,439	+		GFF649	0.26	+0.0
647,441	+		GFF649	0.26	-1.7
647,441	+		GFF649	0.26	-0.1
647,442	-		GFF649	0.27	+0.1
647,487	+		GFF649	0.32	-1.3
647,487	+		GFF649	0.32	-2.8
647,493	+		GFF649	0.33	-0.9
647,503	+		GFF649	0.34	-1.2
647,512	-		GFF649	0.35	-2.1
647,542	-		GFF649	0.39	-1.8
647,569	+		GFF649	0.42	-0.8
647,613	-		GFF649	0.48	+0.8
647,622	+		GFF649	0.49	-0.8
647,622	+		GFF649	0.49	+0.5
647,627	+		GFF649	0.49	+0.4
647,627	+		GFF649	0.49	-0.1
647,627	+		GFF649	0.49	+0.5
647,627	+		GFF649	0.49	-0.7
647,635	-		GFF649	0.50	-0.4
647,637	+		GFF649	0.51	-0.4
647,637	+		GFF649	0.51	-0.9
647,661	-		GFF649	0.54	-1.2
647,668	+		GFF649	0.54	-0.5
647,669	+		GFF649	0.55	-0.2
647,669	+		GFF649	0.55	-0.7
647,671	-		GFF649	0.55	-0.3
647,675	-		GFF649	0.55	+0.7
647,675	-		GFF649	0.55	+0.1
647,675	-		GFF649	0.55	-1.8
647,687	-		GFF649	0.57	-0.9
647,687	-		GFF649	0.57	-0.6
647,762	+		GFF649	0.66	-2.1
647,762	+		GFF649	0.66	+0.4
647,770	-		GFF649	0.67	-1.8
647,772	+		GFF649	0.67	-0.2
647,772	+		GFF649	0.67	-1.5
647,772	+		GFF649	0.67	-0.2
647,772	+		GFF649	0.67	+0.1
647,772	+		GFF649	0.67	-0.2
647,778	-		GFF649	0.68	-1.4
647,780	-		GFF649	0.68	-0.9
647,817	-		GFF649	0.73	-0.3
647,817	-		GFF649	0.73	-2.7
647,830	+		GFF649	0.74	+0.2
647,838	-		GFF649	0.75	-0.1
647,838	-		GFF649	0.75	-0.1
647,844	+		GFF649	0.76	+1.0
647,846	-		GFF649	0.76	+0.1
647,862	-		GFF649	0.78	-1.4
647,901	+		GFF649	0.83	-1.1
647,916	-		GFF649	0.85	-0.2
647,956	+				-2.2
647,978	-				-1.2
648,000	-				+1.3
648,004	+				+0.0
648,011	+				+0.5
648,016	+				-2.6
648,021	+				-0.3
648,024	-				+0.0
648,024	-				-0.3
648,049	-				+0.6
648,054	-				+1.1
648,088	-				-1.4
648,105	+				+0.1
648,106	+				+0.3
648,106	+				-0.4
648,114	-				-1.1
648,116	+				+0.4
648,130	+				-1.9
648,130	+				+1.3
648,132	-				-0.7
648,135	+				-0.9
648,135	+				-1.1
648,137	-				-0.5
648,138	-				+0.8
648,138	-				-0.1
648,143	-				+1.4
648,143	-				+0.5
648,143	-				-1.5
648,143	-				-0.3
648,143	-				+0.7
648,143	-				-2.1
648,143	-				-0.2
648,146	+				-0.3
648,149	-				-0.1
648,151	+				+0.2
648,151	+				-1.0
648,158	-				-0.5
648,159	-				-1.0
648,159	-				-0.7
648,165	-				+0.3
648,170	+				-1.0
648,170	+				-2.2
648,170	+				-0.7
648,170	+				-0.7
648,170	+				-0.7
648,186	-				-1.2
648,191	+				-0.6
648,197	+				-1.0
648,197	+				+0.2
648,198	+				-0.2
648,228	+				-0.9
648,236	-				+0.7
648,236	-				-1.5
648,236	-				-0.4
648,297	+				-0.4
648,297	+				-0.5
648,298	-				-1.1
648,305	+				+0.0
648,305	-				+0.2
648,305	-				+1.4
648,316	+				+1.0
648,320	+				+0.5
648,320	+				+0.5
648,322	-				-1.6
648,328	-				+0.1
648,364	+		GFF650	0.10	-0.5
648,364	+		GFF650	0.10	-0.5
648,369	-		GFF650	0.10	-1.0
648,369	-		GFF650	0.10	-1.2
648,372	-		GFF650	0.11	+1.5
648,372	-		GFF650	0.11	-0.3
648,372	-		GFF650	0.11	+0.0
648,374	-		GFF650	0.11	+0.5
648,382	+		GFF650	0.11	-0.1
648,426	+		GFF650	0.13	-0.8
648,451	+		GFF650	0.14	+0.3
648,451	+		GFF650	0.14	+0.3
648,459	-		GFF650	0.14	-0.4
648,459	-		GFF650	0.14	+0.7
648,459	-		GFF650	0.14	+0.4
648,459	-		GFF650	0.14	+0.7
648,459	-		GFF650	0.14	-1.5
648,473	-		GFF650	0.14	+0.9
648,484	+		GFF650	0.15	-0.4
648,485	+		GFF650	0.15	-1.0
648,492	-		GFF650	0.15	+0.1
648,493	-		GFF650	0.15	-0.3
648,499	+		GFF650	0.15	-2.2
648,507	-		GFF650	0.16	+0.5
648,518	+		GFF650	0.16	+0.7
648,521	-		GFF650	0.16	+0.1
648,526	-		GFF650	0.17	+0.2
648,572	+		GFF650	0.18	+0.9
648,587	+		GFF650	0.19	-2.1
648,594	+		GFF650	0.19	-0.6
648,595	-		GFF650	0.19	+0.1
648,597	+		GFF650	0.19	-0.1
648,602	+		GFF650	0.19	-0.2
648,605	-		GFF650	0.20	-2.1
648,637	-		GFF650	0.21	-1.7
648,680	+		GFF650	0.23	-0.2
648,695	+		GFF650	0.23	+0.7
648,705	+		GFF650	0.24	-1.6
648,705	+		GFF650	0.24	-0.2
648,745	-		GFF650	0.25	-0.2
648,747	+		GFF650	0.25	-1.9
648,747	+		GFF650	0.25	-1.1
648,755	-		GFF650	0.25	-0.2
648,777	+		GFF650	0.26	+0.3
648,777	+		GFF650	0.26	-0.3
648,785	-		GFF650	0.27	-0.3
648,792	+		GFF650	0.27	-0.3
648,809	-		GFF650	0.28	-0.2
648,828	+		GFF650	0.28	+0.1
648,833	-		GFF650	0.28	-0.5
648,833	-		GFF650	0.28	-0.2
648,836	-		GFF650	0.29	+0.7
648,844	-		GFF650	0.29	-0.5
648,844	-		GFF650	0.29	-0.1
648,844	-		GFF650	0.29	-1.1
648,844	-		GFF650	0.29	+1.4
648,844	-		GFF650	0.29	+0.1
648,844	-		GFF650	0.29	+0.6
648,844	-		GFF650	0.29	-1.4
648,851	+		GFF650	0.29	+0.0
648,883	+		GFF650	0.30	+0.6
648,889	+		GFF650	0.31	+0.5
648,890	+		GFF650	0.31	-0.1
648,891	-		GFF650	0.31	-0.6
648,895	+		GFF650	0.31	-0.5
648,903	-		GFF650	0.31	-0.3
648,905	+		GFF650	0.31	-0.1
648,905	+		GFF650	0.31	-1.4
648,905	+		GFF650	0.31	-0.4
648,905	+		GFF650	0.31	-0.1
648,905	+		GFF650	0.31	-1.1
648,905	+		GFF650	0.31	-0.5
648,905	+		GFF650	0.31	-0.4
648,905	+		GFF650	0.31	-1.3
648,905	+		GFF650	0.31	+0.3
648,905	+		GFF650	0.31	+0.3
648,905	+		GFF650	0.31	-1.1
648,905	+		GFF650	0.31	-0.4
648,905	+		GFF650	0.31	-0.4
648,905	+		GFF650	0.31	+0.5
648,913	-		GFF650	0.32	+0.5
648,913	-		GFF650	0.32	-2.1
648,913	-		GFF650	0.32	-1.1
648,913	-		GFF650	0.32	-1.9
648,913	-		GFF650	0.32	+0.5
648,913	-		GFF650	0.32	-1.2
648,913	-		GFF650	0.32	+0.5
648,942	+		GFF650	0.33	-1.1
648,947	+		GFF650	0.33	-0.4
648,947	+		GFF650	0.33	-1.8
648,947	+		GFF650	0.33	+0.0
648,947	+		GFF650	0.33	-2.2
648,950	-		GFF650	0.33	+0.1
648,950	-		GFF650	0.33	+0.3
648,955	+		GFF650	0.33	-0.5
648,955	-		GFF650	0.33	-0.8
648,955	-		GFF650	0.33	-0.3
648,960	+		GFF650	0.33	+0.1
648,963	-		GFF650	0.34	-1.7
648,968	-		GFF650	0.34	+0.3
648,976	+		GFF650	0.34	+0.0
648,986	-		GFF650	0.34	+0.4
648,986	-		GFF650	0.34	-0.7
648,986	-		GFF650	0.34	+0.6
649,009	-		GFF650	0.35	-0.9
649,015	+		GFF650	0.36	-0.1
649,018	-		GFF650	0.36	-1.0
649,033	-		GFF650	0.36	+0.1
649,034	-		GFF650	0.36	-1.4