Strain Fitness in Sphingobium sp. HT1-2 around GFF644

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF642 and GFF643 are separated by 143 nucleotidesGFF643 and GFF644 are separated by 177 nucleotidesGFF644 and GFF645 are separated by 141 nucleotides GFF642 - hypothetical protein, at 640,657 to 641,262 GFF642 GFF643 - ATP-dependent Clp protease adaptor protein ClpS, at 641,406 to 641,777 GFF643 GFF644 - hypothetical protein, at 641,955 to 642,818 GFF644 GFF645 - Polyhydroxyalkanoic acid synthase, at 642,960 to 644,699 GFF645 Position (kb) 641 642 643Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 640.955 kb on - strand, within GFF642at 640.957 kb on + strand, within GFF642at 640.979 kb on + strand, within GFF642at 640.989 kb on - strand, within GFF642at 641.076 kb on + strand, within GFF642at 641.086 kb on + strand, within GFF642at 641.103 kb on - strand, within GFF642at 641.107 kb on - strand, within GFF642at 641.168 kb on + strand, within GFF642at 641.356 kb on + strandat 641.377 kb on + strandat 641.385 kb on - strandat 641.447 kb on + strand, within GFF643at 641.465 kb on - strand, within GFF643at 641.481 kb on - strand, within GFF643at 641.494 kb on + strand, within GFF643at 641.497 kb on - strand, within GFF643at 641.497 kb on - strand, within GFF643at 641.497 kb on - strand, within GFF643at 641.511 kb on + strand, within GFF643at 641.513 kb on + strand, within GFF643at 641.521 kb on - strand, within GFF643at 641.531 kb on - strand, within GFF643at 641.540 kb on + strand, within GFF643at 641.547 kb on - strand, within GFF643at 641.548 kb on - strand, within GFF643at 641.559 kb on + strand, within GFF643at 641.559 kb on + strand, within GFF643at 641.559 kb on + strand, within GFF643at 641.567 kb on - strand, within GFF643at 641.612 kb on - strand, within GFF643at 641.631 kb on + strand, within GFF643at 641.648 kb on - strand, within GFF643at 641.649 kb on - strand, within GFF643at 641.666 kb on + strand, within GFF643at 641.672 kb on + strand, within GFF643at 641.680 kb on - strand, within GFF643at 641.699 kb on + strand, within GFF643at 641.713 kb on + strand, within GFF643at 641.718 kb on + strand, within GFF643at 641.728 kb on + strand, within GFF643at 641.734 kb on + strand, within GFF643at 641.734 kb on + strand, within GFF643at 641.734 kb on + strand, within GFF643at 641.734 kb on + strand, within GFF643at 641.734 kb on + strand, within GFF643at 641.734 kb on + strand, within GFF643at 641.734 kb on + strand, within GFF643at 641.734 kb on + strand, within GFF643at 641.734 kb on + strand, within GFF643at 641.734 kb on + strand, within GFF643at 641.734 kb on + strand, within GFF643at 641.742 kb on - strandat 641.742 kb on - strandat 641.742 kb on - strandat 641.742 kb on - strandat 641.742 kb on - strandat 641.742 kb on - strandat 641.742 kb on - strandat 641.742 kb on - strandat 641.742 kb on - strandat 641.742 kb on - strandat 641.742 kb on - strandat 641.766 kb on - strandat 641.766 kb on - strandat 641.819 kb on - strandat 641.848 kb on - strandat 641.848 kb on - strandat 641.876 kb on + strandat 641.884 kb on - strandat 641.894 kb on + strandat 642.405 kb on - strand, within GFF644at 642.515 kb on + strand, within GFF644at 642.528 kb on + strand, within GFF644at 642.528 kb on - strand, within GFF644at 642.664 kb on + strand, within GFF644at 642.723 kb on + strand, within GFF644at 642.799 kb on + strandat 642.799 kb on + strandat 642.807 kb on - strandat 642.807 kb on - strandat 642.807 kb on - strandat 642.814 kb on - strandat 642.858 kb on + strandat 642.879 kb on + strandat 642.885 kb on - strandat 642.887 kb on - strandat 642.887 kb on - strandat 642.922 kb on + strandat 642.944 kb on + strandat 642.944 kb on + strandat 642.944 kb on + strandat 642.944 kb on + strandat 642.968 kb on - strandat 643.055 kb on + strandat 643.055 kb on + strandat 643.055 kb on + strandat 643.055 kb on + strandat 643.063 kb on - strandat 643.063 kb on - strandat 643.073 kb on - strandat 643.093 kb on + strandat 643.129 kb on - strandat 643.159 kb on + strand, within GFF645at 643.211 kb on + strand, within GFF645at 643.212 kb on + strand, within GFF645at 643.219 kb on + strand, within GFF645at 643.230 kb on + strand, within GFF645at 643.273 kb on + strand, within GFF645at 643.273 kb on + strand, within GFF645at 643.273 kb on + strand, within GFF645at 643.273 kb on + strand, within GFF645at 643.273 kb on + strand, within GFF645at 643.273 kb on + strand, within GFF645at 643.281 kb on - strand, within GFF645at 643.281 kb on - strand, within GFF645at 643.288 kb on + strand, within GFF645at 643.305 kb on + strand, within GFF645at 643.308 kb on - strand, within GFF645at 643.310 kb on + strand, within GFF645at 643.332 kb on - strand, within GFF645at 643.334 kb on + strand, within GFF645at 643.365 kb on + strand, within GFF645at 643.385 kb on + strand, within GFF645at 643.396 kb on + strand, within GFF645at 643.401 kb on + strand, within GFF645at 643.404 kb on - strand, within GFF645at 643.404 kb on - strand, within GFF645at 643.406 kb on + strand, within GFF645at 643.414 kb on - strand, within GFF645at 643.416 kb on + strand, within GFF645at 643.426 kb on - strand, within GFF645at 643.453 kb on + strand, within GFF645at 643.477 kb on - strand, within GFF645at 643.487 kb on - strand, within GFF645at 643.529 kb on + strand, within GFF645at 643.547 kb on + strand, within GFF645at 643.548 kb on + strand, within GFF645at 643.548 kb on + strand, within GFF645at 643.554 kb on - strand, within GFF645at 643.556 kb on - strand, within GFF645at 643.556 kb on - strand, within GFF645at 643.556 kb on - strand, within GFF645at 643.562 kb on - strand, within GFF645at 643.562 kb on - strand, within GFF645at 643.565 kb on + strand, within GFF645at 643.567 kb on - strand, within GFF645at 643.569 kb on - strand, within GFF645at 643.569 kb on - strand, within GFF645at 643.569 kb on - strand, within GFF645at 643.590 kb on + strand, within GFF645at 643.600 kb on - strand, within GFF645at 643.641 kb on - strand, within GFF645at 643.645 kb on - strand, within GFF645at 643.645 kb on - strand, within GFF645at 643.645 kb on - strand, within GFF645at 643.645 kb on - strand, within GFF645at 643.645 kb on - strand, within GFF645at 643.668 kb on - strand, within GFF645at 643.713 kb on - strand, within GFF645at 643.727 kb on + strand, within GFF645at 643.743 kb on - strand, within GFF645at 643.757 kb on + strand, within GFF645at 643.757 kb on + strand, within GFF645at 643.774 kb on + strand, within GFF645at 643.774 kb on + strand, within GFF645at 643.780 kb on + strand, within GFF645at 643.799 kb on - strand, within GFF645at 643.808 kb on - strand, within GFF645at 643.808 kb on - strand, within GFF645

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate
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640,955 - GFF642 0.49 -1.1
640,957 + GFF642 0.50 -0.4
640,979 + GFF642 0.53 -0.7
640,989 - GFF642 0.55 +0.7
641,076 + GFF642 0.69 +0.6
641,086 + GFF642 0.71 -1.8
641,103 - GFF642 0.74 +0.5
641,107 - GFF642 0.74 -1.0
641,168 + GFF642 0.84 -2.7
641,356 + -0.8
641,377 + -1.1
641,385 - +0.1
641,447 + GFF643 0.11 -1.6
641,465 - GFF643 0.16 +0.2
641,481 - GFF643 0.20 +0.6
641,494 + GFF643 0.24 -0.4
641,497 - GFF643 0.24 +0.6
641,497 - GFF643 0.24 +0.8
641,497 - GFF643 0.24 -0.8
641,511 + GFF643 0.28 -0.4
641,513 + GFF643 0.29 +0.4
641,521 - GFF643 0.31 -0.6
641,531 - GFF643 0.34 +2.8
641,540 + GFF643 0.36 +0.7
641,547 - GFF643 0.38 -1.1
641,548 - GFF643 0.38 -2.5
641,559 + GFF643 0.41 -1.4
641,559 + GFF643 0.41 -1.7
641,559 + GFF643 0.41 +0.2
641,567 - GFF643 0.43 -0.3
641,612 - GFF643 0.55 +1.5
641,631 + GFF643 0.60 -1.4
641,648 - GFF643 0.65 +1.4
641,649 - GFF643 0.65 +0.6
641,666 + GFF643 0.70 -1.6
641,672 + GFF643 0.72 -0.3
641,680 - GFF643 0.74 +0.2
641,699 + GFF643 0.79 +0.2
641,713 + GFF643 0.83 -0.2
641,718 + GFF643 0.84 -0.6
641,728 + GFF643 0.87 +0.8
641,734 + GFF643 0.88 +1.0
641,734 + GFF643 0.88 -0.6
641,734 + GFF643 0.88 -0.8
641,734 + GFF643 0.88 -0.7
641,734 + GFF643 0.88 -1.6
641,734 + GFF643 0.88 +2.4
641,734 + GFF643 0.88 -1.6
641,734 + GFF643 0.88 -1.2
641,734 + GFF643 0.88 +0.7
641,734 + GFF643 0.88 +1.2
641,734 + GFF643 0.88 -0.4
641,742 - -1.0
641,742 - -0.8
641,742 - +1.6
641,742 - +1.1
641,742 - +0.5
641,742 - +1.8
641,742 - +0.8
641,742 - -1.1
641,742 - -1.2
641,742 - +1.7
641,742 - +1.7
641,766 - -0.0
641,766 - -0.3
641,819 - -0.1
641,848 - -0.1
641,848 - +0.8
641,876 + +0.2
641,884 - +1.8
641,894 + -2.9
642,405 - GFF644 0.52 -0.0
642,515 + GFF644 0.65 -0.9
642,528 + GFF644 0.66 -1.3
642,528 - GFF644 0.66 +0.4
642,664 + GFF644 0.82 -0.6
642,723 + GFF644 0.89 -1.4
642,799 + -0.9
642,799 + -0.0
642,807 - -0.1
642,807 - -0.6
642,807 - -0.7
642,814 - +3.0
642,858 + +0.4
642,879 + +1.4
642,885 - +1.1
642,887 - +0.1
642,887 - +0.6
642,922 + -0.8
642,944 + -0.6
642,944 + +0.6
642,944 + -0.4
642,944 + -0.0
642,968 - -0.1
643,055 + -3.6
643,055 + -4.3
643,055 + -1.8
643,055 + -3.1
643,063 - -1.4
643,063 - -0.6
643,073 - -1.6
643,093 + -2.6
643,129 - -4.2
643,159 + GFF645 0.11 -2.1
643,211 + GFF645 0.14 -0.8
643,212 + GFF645 0.14 -2.9
643,219 + GFF645 0.15 -2.6
643,230 + GFF645 0.16 -1.0
643,273 + GFF645 0.18 -1.9
643,273 + GFF645 0.18 -1.8
643,273 + GFF645 0.18 -2.1
643,273 + GFF645 0.18 -1.9
643,273 + GFF645 0.18 -3.6
643,273 + GFF645 0.18 -2.1
643,281 - GFF645 0.18 -0.9
643,281 - GFF645 0.18 -2.5
643,288 + GFF645 0.19 -2.2
643,305 + GFF645 0.20 -2.0
643,308 - GFF645 0.20 -2.9
643,310 + GFF645 0.20 -1.0
643,332 - GFF645 0.21 -2.2
643,334 + GFF645 0.21 -1.0
643,365 + GFF645 0.23 -2.1
643,385 + GFF645 0.24 -2.4
643,396 + GFF645 0.25 -3.1
643,401 + GFF645 0.25 -3.1
643,404 - GFF645 0.26 -2.6
643,404 - GFF645 0.26 -1.9
643,406 + GFF645 0.26 -2.4
643,414 - GFF645 0.26 -3.1
643,416 + GFF645 0.26 -2.3
643,426 - GFF645 0.27 -3.9
643,453 + GFF645 0.28 -3.3
643,477 - GFF645 0.30 -3.9
643,487 - GFF645 0.30 -2.8
643,529 + GFF645 0.33 -4.5
643,547 + GFF645 0.34 -2.7
643,548 + GFF645 0.34 -1.9
643,548 + GFF645 0.34 -2.1
643,554 - GFF645 0.34 -1.4
643,556 - GFF645 0.34 -3.2
643,556 - GFF645 0.34 -1.5
643,556 - GFF645 0.34 -2.2
643,562 - GFF645 0.35 -0.9
643,562 - GFF645 0.35 -1.5
643,565 + GFF645 0.35 -1.3
643,567 - GFF645 0.35 +0.6
643,569 - GFF645 0.35 -1.5
643,569 - GFF645 0.35 -1.2
643,569 - GFF645 0.35 -2.4
643,590 + GFF645 0.36 +0.1
643,600 - GFF645 0.37 -1.3
643,641 - GFF645 0.39 -1.5
643,645 - GFF645 0.39 -3.3
643,645 - GFF645 0.39 -2.1
643,645 - GFF645 0.39 -3.9
643,645 - GFF645 0.39 -1.9
643,645 - GFF645 0.39 -1.5
643,668 - GFF645 0.41 -1.5
643,713 - GFF645 0.43 -2.1
643,727 + GFF645 0.44 -1.6
643,743 - GFF645 0.45 -3.7
643,757 + GFF645 0.46 -2.5
643,757 + GFF645 0.46 -2.9
643,774 + GFF645 0.47 -2.3
643,774 + GFF645 0.47 -2.2
643,780 + GFF645 0.47 -0.9
643,799 - GFF645 0.48 -3.6
643,808 - GFF645 0.49 -3.5
643,808 - GFF645 0.49 -2.0

Or see this region's nucleotide sequence