Strain Fitness in Sphingobium sp. HT1-2 around GFF582

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF581 and GFF582 are separated by 256 nucleotidesGFF582 and GFF583 are separated by 109 nucleotides GFF581 - Aminopeptidase N, at 580,070 to 582,718 GFF581 GFF582 - NADPH-dependent 7-cyano-7-deazaguanine reductase (EC 1.7.1.13), at 582,975 to 583,427 GFF582 GFF583 - hypothetical protein, at 583,537 to 584,853 GFF583 Position (kb) 582 583 584Strain fitness (log2 ratio) -2 -1 0 1 2 3at 582.033 kb on - strand, within GFF581at 582.033 kb on - strand, within GFF581at 582.108 kb on + strand, within GFF581at 582.118 kb on + strand, within GFF581at 582.130 kb on + strand, within GFF581at 582.154 kb on + strand, within GFF581at 582.198 kb on - strand, within GFF581at 582.210 kb on - strand, within GFF581at 582.233 kb on - strand, within GFF581at 582.233 kb on - strand, within GFF581at 582.233 kb on - strand, within GFF581at 582.233 kb on - strand, within GFF581at 582.233 kb on - strand, within GFF581at 582.244 kb on - strand, within GFF581at 582.244 kb on - strand, within GFF581at 582.273 kb on + strand, within GFF581at 582.273 kb on + strand, within GFF581at 582.273 kb on + strand, within GFF581at 582.282 kb on + strand, within GFF581at 582.300 kb on - strand, within GFF581at 582.316 kb on - strand, within GFF581at 582.321 kb on + strand, within GFF581at 582.337 kb on + strand, within GFF581at 582.345 kb on - strand, within GFF581at 582.345 kb on - strand, within GFF581at 582.345 kb on - strand, within GFF581at 582.388 kb on + strand, within GFF581at 582.396 kb on + strand, within GFF581at 582.423 kb on + strand, within GFF581at 582.431 kb on - strand, within GFF581at 582.431 kb on - strand, within GFF581at 582.439 kb on + strand, within GFF581at 582.439 kb on + strand, within GFF581at 582.440 kb on + strand, within GFF581at 582.443 kb on - strand, within GFF581at 582.447 kb on - strand, within GFF581at 582.453 kb on - strand, within GFF581at 582.463 kb on - strandat 582.469 kb on - strandat 582.479 kb on + strandat 582.487 kb on - strandat 582.487 kb on - strandat 582.489 kb on - strandat 582.573 kb on - strandat 582.584 kb on + strandat 582.586 kb on + strandat 582.604 kb on + strandat 582.607 kb on - strandat 582.607 kb on - strandat 582.634 kb on - strandat 582.644 kb on - strandat 582.646 kb on + strandat 582.650 kb on - strandat 582.650 kb on - strandat 582.650 kb on - strandat 582.650 kb on - strandat 582.650 kb on - strandat 582.650 kb on - strandat 582.650 kb on - strandat 582.650 kb on - strandat 582.695 kb on + strandat 582.713 kb on + strandat 582.713 kb on + strandat 582.784 kb on - strandat 582.791 kb on + strandat 582.799 kb on - strandat 582.806 kb on + strandat 582.818 kb on - strandat 582.838 kb on - strandat 582.841 kb on + strandat 582.893 kb on - strandat 582.898 kb on - strandat 582.908 kb on - strandat 582.951 kb on + strandat 582.958 kb on + strandat 582.973 kb on + strandat 583.188 kb on + strand, within GFF582at 583.193 kb on + strand, within GFF582at 583.205 kb on - strand, within GFF582at 583.321 kb on + strand, within GFF582at 583.364 kb on - strand, within GFF582at 583.390 kb on + strandat 583.398 kb on - strandat 583.398 kb on - strandat 583.415 kb on + strandat 583.415 kb on + strandat 583.488 kb on - strandat 583.525 kb on + strandat 583.525 kb on + strandat 583.525 kb on + strandat 583.531 kb on - strandat 583.533 kb on - strandat 583.550 kb on + strandat 583.558 kb on - strandat 583.580 kb on - strandat 583.599 kb on - strandat 583.695 kb on + strand, within GFF583at 583.700 kb on + strand, within GFF583at 583.700 kb on + strand, within GFF583at 583.700 kb on + strand, within GFF583at 583.700 kb on + strand, within GFF583at 583.708 kb on - strand, within GFF583at 583.708 kb on - strand, within GFF583at 583.760 kb on + strand, within GFF583at 583.760 kb on + strand, within GFF583at 583.760 kb on + strand, within GFF583at 583.760 kb on + strand, within GFF583at 583.760 kb on + strand, within GFF583at 583.766 kb on + strand, within GFF583at 583.766 kb on - strand, within GFF583at 583.768 kb on - strand, within GFF583at 583.784 kb on - strand, within GFF583at 583.797 kb on + strand, within GFF583at 583.807 kb on + strand, within GFF583at 583.814 kb on + strand, within GFF583at 583.814 kb on + strand, within GFF583at 583.842 kb on + strand, within GFF583at 583.842 kb on + strand, within GFF583at 583.844 kb on + strand, within GFF583at 583.844 kb on + strand, within GFF583at 583.844 kb on + strand, within GFF583at 583.844 kb on + strand, within GFF583at 583.850 kb on - strand, within GFF583at 583.852 kb on - strand, within GFF583at 583.852 kb on - strand, within GFF583at 583.852 kb on - strand, within GFF583at 583.868 kb on + strand, within GFF583at 583.868 kb on + strand, within GFF583at 583.868 kb on + strand, within GFF583at 583.868 kb on + strand, within GFF583at 583.868 kb on + strand, within GFF583at 583.868 kb on + strand, within GFF583at 583.876 kb on - strand, within GFF583at 583.876 kb on - strand, within GFF583at 583.876 kb on - strand, within GFF583at 583.876 kb on - strand, within GFF583at 583.876 kb on - strand, within GFF583at 583.876 kb on - strand, within GFF583at 583.876 kb on - strand, within GFF583at 583.876 kb on - strand, within GFF583at 583.876 kb on - strand, within GFF583at 583.876 kb on - strand, within GFF583at 583.876 kb on - strand, within GFF583at 583.917 kb on + strand, within GFF583at 583.917 kb on + strand, within GFF583at 583.917 kb on + strand, within GFF583at 583.917 kb on + strand, within GFF583at 583.917 kb on + strand, within GFF583at 583.920 kb on - strand, within GFF583at 583.925 kb on - strand, within GFF583at 583.925 kb on - strand, within GFF583at 583.925 kb on - strand, within GFF583at 583.925 kb on - strand, within GFF583at 583.925 kb on - strand, within GFF583at 583.950 kb on - strand, within GFF583at 583.992 kb on + strand, within GFF583at 583.995 kb on - strand, within GFF583at 584.000 kb on - strand, within GFF583at 584.000 kb on - strand, within GFF583at 584.014 kb on + strand, within GFF583at 584.014 kb on + strand, within GFF583at 584.014 kb on + strand, within GFF583at 584.014 kb on + strand, within GFF583at 584.014 kb on + strand, within GFF583at 584.014 kb on + strand, within GFF583at 584.022 kb on - strand, within GFF583at 584.022 kb on - strand, within GFF583at 584.022 kb on - strand, within GFF583at 584.070 kb on + strand, within GFF583at 584.070 kb on + strand, within GFF583at 584.078 kb on - strand, within GFF583at 584.106 kb on + strand, within GFF583at 584.130 kb on + strand, within GFF583at 584.155 kb on + strand, within GFF583at 584.157 kb on + strand, within GFF583at 584.184 kb on + strand, within GFF583at 584.189 kb on + strand, within GFF583at 584.189 kb on + strand, within GFF583at 584.194 kb on + strand, within GFF583at 584.206 kb on + strand, within GFF583at 584.206 kb on + strand, within GFF583at 584.206 kb on + strand, within GFF583at 584.214 kb on - strand, within GFF583at 584.216 kb on + strand, within GFF583at 584.216 kb on + strand, within GFF583at 584.234 kb on - strand, within GFF583at 584.234 kb on - strand, within GFF583at 584.239 kb on - strand, within GFF583at 584.258 kb on - strand, within GFF583at 584.279 kb on + strand, within GFF583at 584.279 kb on + strand, within GFF583at 584.287 kb on - strand, within GFF583at 584.306 kb on + strand, within GFF583at 584.306 kb on + strand, within GFF583at 584.311 kb on + strand, within GFF583at 584.314 kb on - strand, within GFF583at 584.348 kb on + strand, within GFF583at 584.365 kb on + strand, within GFF583at 584.393 kb on - strand, within GFF583at 584.393 kb on - strand, within GFF583at 584.402 kb on + strand, within GFF583at 584.402 kb on + strand, within GFF583at 584.402 kb on + strand, within GFF583

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate
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582,033 - GFF581 0.74 -1.2
582,033 - GFF581 0.74 -1.0
582,108 + GFF581 0.77 -1.3
582,118 + GFF581 0.77 +0.1
582,130 + GFF581 0.78 +1.2
582,154 + GFF581 0.79 -1.3
582,198 - GFF581 0.80 -0.2
582,210 - GFF581 0.81 +0.8
582,233 - GFF581 0.82 +0.2
582,233 - GFF581 0.82 -0.3
582,233 - GFF581 0.82 +0.2
582,233 - GFF581 0.82 -1.3
582,233 - GFF581 0.82 -0.6
582,244 - GFF581 0.82 +0.7
582,244 - GFF581 0.82 +0.6
582,273 + GFF581 0.83 +1.8
582,273 + GFF581 0.83 +0.5
582,273 + GFF581 0.83 +0.6
582,282 + GFF581 0.84 +0.9
582,300 - GFF581 0.84 -2.3
582,316 - GFF581 0.85 -1.0
582,321 + GFF581 0.85 +2.8
582,337 + GFF581 0.86 -1.9
582,345 - GFF581 0.86 -1.5
582,345 - GFF581 0.86 +0.5
582,345 - GFF581 0.86 -0.2
582,388 + GFF581 0.88 +0.3
582,396 + GFF581 0.88 -0.3
582,423 + GFF581 0.89 +0.3
582,431 - GFF581 0.89 +0.5
582,431 - GFF581 0.89 -0.3
582,439 + GFF581 0.89 +0.9
582,439 + GFF581 0.89 -1.5
582,440 + GFF581 0.89 -0.7
582,443 - GFF581 0.90 +0.3
582,447 - GFF581 0.90 +0.6
582,453 - GFF581 0.90 -0.1
582,463 - +1.0
582,469 - -1.6
582,479 + -1.4
582,487 - +0.5
582,487 - +2.0
582,489 - +0.9
582,573 - +0.2
582,584 + -0.8
582,586 + -0.6
582,604 + +0.2
582,607 - -1.2
582,607 - -0.0
582,634 - -0.0
582,644 - -0.0
582,646 + +1.3
582,650 - -0.1
582,650 - -0.7
582,650 - +0.4
582,650 - -0.7
582,650 - -0.2
582,650 - +0.3
582,650 - -1.1
582,650 - +0.4
582,695 + -0.4
582,713 + +2.0
582,713 + +1.8
582,784 - -0.5
582,791 + +2.6
582,799 - -0.3
582,806 + -1.0
582,818 - -0.0
582,838 - -0.4
582,841 + -0.8
582,893 - +0.3
582,898 - +0.3
582,908 - -0.4
582,951 + -0.9
582,958 + -1.8
582,973 + +0.8
583,188 + GFF582 0.47 -1.8
583,193 + GFF582 0.48 +0.2
583,205 - GFF582 0.51 -1.8
583,321 + GFF582 0.76 -0.4
583,364 - GFF582 0.86 +0.1
583,390 + -0.2
583,398 - +1.0
583,398 - +0.5
583,415 + -0.0
583,415 + -2.2
583,488 - -0.7
583,525 + +0.8
583,525 + -0.9
583,525 + +0.4
583,531 - -0.3
583,533 - -0.1
583,550 + +0.4
583,558 - -1.4
583,580 - -1.7
583,599 - +0.9
583,695 + GFF583 0.12 -1.0
583,700 + GFF583 0.12 +0.2
583,700 + GFF583 0.12 +0.5
583,700 + GFF583 0.12 +1.6
583,700 + GFF583 0.12 -0.9
583,708 - GFF583 0.13 +1.6
583,708 - GFF583 0.13 +1.1
583,760 + GFF583 0.17 +1.0
583,760 + GFF583 0.17 -0.1
583,760 + GFF583 0.17 -0.4
583,760 + GFF583 0.17 +0.6
583,760 + GFF583 0.17 -1.2
583,766 + GFF583 0.17 -1.0
583,766 - GFF583 0.17 +0.9
583,768 - GFF583 0.18 +0.2
583,784 - GFF583 0.19 -0.7
583,797 + GFF583 0.20 -1.2
583,807 + GFF583 0.21 +0.5
583,814 + GFF583 0.21 +1.0
583,814 + GFF583 0.21 +1.5
583,842 + GFF583 0.23 +1.4
583,842 + GFF583 0.23 -0.8
583,844 + GFF583 0.23 +0.1
583,844 + GFF583 0.23 +0.4
583,844 + GFF583 0.23 -0.9
583,844 + GFF583 0.23 +0.4
583,850 - GFF583 0.24 +0.2
583,852 - GFF583 0.24 -0.1
583,852 - GFF583 0.24 -0.5
583,852 - GFF583 0.24 +1.5
583,868 + GFF583 0.25 -0.9
583,868 + GFF583 0.25 -0.9
583,868 + GFF583 0.25 +0.8
583,868 + GFF583 0.25 +1.1
583,868 + GFF583 0.25 -0.2
583,868 + GFF583 0.25 -1.6
583,876 - GFF583 0.26 +0.4
583,876 - GFF583 0.26 +2.0
583,876 - GFF583 0.26 +0.6
583,876 - GFF583 0.26 +1.5
583,876 - GFF583 0.26 +3.2
583,876 - GFF583 0.26 -0.2
583,876 - GFF583 0.26 +2.1
583,876 - GFF583 0.26 -0.9
583,876 - GFF583 0.26 +0.6
583,876 - GFF583 0.26 -0.5
583,876 - GFF583 0.26 +0.3
583,917 + GFF583 0.29 +0.8
583,917 + GFF583 0.29 -0.9
583,917 + GFF583 0.29 -1.2
583,917 + GFF583 0.29 -0.4
583,917 + GFF583 0.29 -0.4
583,920 - GFF583 0.29 +0.4
583,925 - GFF583 0.29 -1.1
583,925 - GFF583 0.29 -0.2
583,925 - GFF583 0.29 -1.6
583,925 - GFF583 0.29 -0.9
583,925 - GFF583 0.29 -0.9
583,950 - GFF583 0.31 +0.9
583,992 + GFF583 0.35 -0.1
583,995 - GFF583 0.35 +0.7
584,000 - GFF583 0.35 +1.4
584,000 - GFF583 0.35 -0.3
584,014 + GFF583 0.36 +0.0
584,014 + GFF583 0.36 -0.1
584,014 + GFF583 0.36 -0.3
584,014 + GFF583 0.36 -0.2
584,014 + GFF583 0.36 +0.0
584,014 + GFF583 0.36 +1.3
584,022 - GFF583 0.37 -0.5
584,022 - GFF583 0.37 +0.9
584,022 - GFF583 0.37 -0.1
584,070 + GFF583 0.40 +0.2
584,070 + GFF583 0.40 -2.3
584,078 - GFF583 0.41 -0.7
584,106 + GFF583 0.43 -0.7
584,130 + GFF583 0.45 -2.4
584,155 + GFF583 0.47 +0.6
584,157 + GFF583 0.47 +0.6
584,184 + GFF583 0.49 +0.3
584,189 + GFF583 0.50 -0.9
584,189 + GFF583 0.50 -0.4
584,194 + GFF583 0.50 -1.0
584,206 + GFF583 0.51 +1.2
584,206 + GFF583 0.51 +0.1
584,206 + GFF583 0.51 +0.8
584,214 - GFF583 0.51 +0.7
584,216 + GFF583 0.52 -2.6
584,216 + GFF583 0.52 -0.8
584,234 - GFF583 0.53 -0.1
584,234 - GFF583 0.53 -1.0
584,239 - GFF583 0.53 -0.2
584,258 - GFF583 0.55 -1.2
584,279 + GFF583 0.56 -0.7
584,279 + GFF583 0.56 -1.5
584,287 - GFF583 0.57 +1.1
584,306 + GFF583 0.58 +0.4
584,306 + GFF583 0.58 -0.7
584,311 + GFF583 0.59 +0.0
584,314 - GFF583 0.59 +0.5
584,348 + GFF583 0.62 -0.4
584,365 + GFF583 0.63 -0.2
584,393 - GFF583 0.65 +0.5
584,393 - GFF583 0.65 -0.9
584,402 + GFF583 0.66 -0.4
584,402 + GFF583 0.66 -2.6
584,402 + GFF583 0.66 -2.1

Or see this region's nucleotide sequence