Strain Fitness in Sphingobium sp. HT1-2 around GFF577

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF575 and GFF576 are separated by 121 nucleotidesGFF576 and GFF577 are separated by 174 nucleotidesGFF577 and GFF578 are separated by 77 nucleotides GFF575 - oligopeptide transporter, at 571,836 to 573,800 GFF575 GFF576 - hypothetical protein, at 573,922 to 574,044 GFF576 GFF577 - TonB-dependent receptor, at 574,219 to 577,011 GFF577 GFF578 - hypothetical protein, at 577,089 to 578,489 GFF578 Position (kb) 574 575 576 577 578Strain fitness (log2 ratio) -2 -1 0 1 2 3at 573.338 kb on + strand, within GFF575at 573.338 kb on + strand, within GFF575at 573.346 kb on - strand, within GFF575at 573.826 kb on - strandat 573.831 kb on - strandat 573.924 kb on + strandat 574.041 kb on + strandat 574.046 kb on + strandat 574.091 kb on + strandat 574.225 kb on + strandat 574.269 kb on + strandat 574.285 kb on + strandat 574.320 kb on - strandat 574.346 kb on + strandat 574.400 kb on + strandat 574.441 kb on + strandat 574.449 kb on - strandat 574.484 kb on - strandat 574.586 kb on - strand, within GFF577at 574.622 kb on + strand, within GFF577at 574.624 kb on + strand, within GFF577at 574.624 kb on + strand, within GFF577at 574.632 kb on - strand, within GFF577at 574.632 kb on - strand, within GFF577at 574.702 kb on - strand, within GFF577at 574.702 kb on - strand, within GFF577at 574.738 kb on - strand, within GFF577at 574.812 kb on + strand, within GFF577at 574.837 kb on - strand, within GFF577at 574.838 kb on - strand, within GFF577at 574.846 kb on - strand, within GFF577at 574.846 kb on - strand, within GFF577at 574.846 kb on - strand, within GFF577at 574.910 kb on - strand, within GFF577at 574.936 kb on + strand, within GFF577at 574.970 kb on + strand, within GFF577at 574.973 kb on - strand, within GFF577at 574.994 kb on + strand, within GFF577at 575.011 kb on + strand, within GFF577at 575.016 kb on + strand, within GFF577at 575.052 kb on - strand, within GFF577at 575.113 kb on - strand, within GFF577at 575.158 kb on - strand, within GFF577at 575.158 kb on - strand, within GFF577at 575.174 kb on + strand, within GFF577at 575.187 kb on + strand, within GFF577at 575.213 kb on + strand, within GFF577at 575.213 kb on + strand, within GFF577at 575.239 kb on + strand, within GFF577at 575.261 kb on + strand, within GFF577at 575.265 kb on - strand, within GFF577at 575.345 kb on + strand, within GFF577at 575.345 kb on + strand, within GFF577at 575.353 kb on - strand, within GFF577at 575.376 kb on - strand, within GFF577at 575.577 kb on - strand, within GFF577at 575.623 kb on - strand, within GFF577at 575.627 kb on - strand, within GFF577at 575.628 kb on + strand, within GFF577at 575.664 kb on + strand, within GFF577at 575.683 kb on + strand, within GFF577at 575.718 kb on + strand, within GFF577at 575.736 kb on - strand, within GFF577at 575.748 kb on + strand, within GFF577at 575.766 kb on - strand, within GFF577at 575.783 kb on + strand, within GFF577at 575.791 kb on - strand, within GFF577at 575.824 kb on + strand, within GFF577at 575.864 kb on + strand, within GFF577at 575.868 kb on + strand, within GFF577at 575.868 kb on + strand, within GFF577at 575.900 kb on - strand, within GFF577at 575.906 kb on + strand, within GFF577at 575.906 kb on - strand, within GFF577at 575.914 kb on - strand, within GFF577at 575.987 kb on + strand, within GFF577at 575.987 kb on + strand, within GFF577at 575.987 kb on + strand, within GFF577at 575.995 kb on - strand, within GFF577at 575.995 kb on - strand, within GFF577at 575.995 kb on - strand, within GFF577at 575.995 kb on - strand, within GFF577at 576.017 kb on - strand, within GFF577at 576.047 kb on + strand, within GFF577at 576.047 kb on + strand, within GFF577at 576.077 kb on + strand, within GFF577at 576.077 kb on + strand, within GFF577at 576.082 kb on + strand, within GFF577at 576.082 kb on + strand, within GFF577at 576.085 kb on - strand, within GFF577at 576.085 kb on - strand, within GFF577at 576.085 kb on - strand, within GFF577at 576.090 kb on - strand, within GFF577at 576.090 kb on - strand, within GFF577at 576.090 kb on - strand, within GFF577at 576.090 kb on - strand, within GFF577at 576.117 kb on - strand, within GFF577at 576.135 kb on + strand, within GFF577at 576.136 kb on + strand, within GFF577at 576.143 kb on - strand, within GFF577at 576.195 kb on - strand, within GFF577at 576.228 kb on - strand, within GFF577at 576.256 kb on + strand, within GFF577at 576.256 kb on + strand, within GFF577at 576.256 kb on + strand, within GFF577at 576.256 kb on + strand, within GFF577at 576.256 kb on + strand, within GFF577at 576.264 kb on - strand, within GFF577at 576.264 kb on - strand, within GFF577at 576.266 kb on + strand, within GFF577at 576.266 kb on + strand, within GFF577at 576.274 kb on - strand, within GFF577at 576.274 kb on - strand, within GFF577at 576.276 kb on + strand, within GFF577at 576.289 kb on - strand, within GFF577at 576.335 kb on - strand, within GFF577at 576.339 kb on + strand, within GFF577at 576.339 kb on + strand, within GFF577at 576.340 kb on + strand, within GFF577at 576.341 kb on - strand, within GFF577at 576.347 kb on - strand, within GFF577at 576.347 kb on - strand, within GFF577at 576.353 kb on - strand, within GFF577at 576.353 kb on - strand, within GFF577at 576.356 kb on - strand, within GFF577at 576.411 kb on - strand, within GFF577at 576.480 kb on - strand, within GFF577at 576.516 kb on - strand, within GFF577at 576.534 kb on + strand, within GFF577at 576.550 kb on - strand, within GFF577at 576.550 kb on - strand, within GFF577at 576.552 kb on + strand, within GFF577at 576.560 kb on - strand, within GFF577at 576.560 kb on - strand, within GFF577at 576.573 kb on - strand, within GFF577at 576.611 kb on - strand, within GFF577at 576.612 kb on + strand, within GFF577at 576.626 kb on - strand, within GFF577at 576.627 kb on - strand, within GFF577at 576.643 kb on + strand, within GFF577at 576.643 kb on + strand, within GFF577at 576.643 kb on + strand, within GFF577at 576.643 kb on + strand, within GFF577at 576.643 kb on + strand, within GFF577at 576.651 kb on - strand, within GFF577at 576.651 kb on - strand, within GFF577at 576.651 kb on - strand, within GFF577at 576.670 kb on - strand, within GFF577at 576.725 kb on - strand, within GFF577at 576.726 kb on - strand, within GFF577at 576.768 kb on - strandat 576.801 kb on + strandat 576.882 kb on - strandat 576.894 kb on + strandat 576.938 kb on - strandat 577.100 kb on + strandat 577.100 kb on + strandat 577.100 kb on + strandat 577.100 kb on + strandat 577.100 kb on + strandat 577.100 kb on + strandat 577.121 kb on + strandat 577.149 kb on - strandat 577.153 kb on + strandat 577.172 kb on - strandat 577.172 kb on - strandat 577.188 kb on + strandat 577.252 kb on + strand, within GFF578at 577.265 kb on - strand, within GFF578at 577.307 kb on - strand, within GFF578at 577.343 kb on + strand, within GFF578at 577.343 kb on + strand, within GFF578at 577.343 kb on + strand, within GFF578at 577.343 kb on + strand, within GFF578at 577.351 kb on - strand, within GFF578at 577.351 kb on - strand, within GFF578at 577.351 kb on - strand, within GFF578at 577.351 kb on - strand, within GFF578at 577.351 kb on - strand, within GFF578at 577.374 kb on + strand, within GFF578at 577.374 kb on + strand, within GFF578at 577.374 kb on + strand, within GFF578at 577.374 kb on + strand, within GFF578at 577.374 kb on + strand, within GFF578at 577.374 kb on + strand, within GFF578at 577.374 kb on + strand, within GFF578at 577.374 kb on + strand, within GFF578at 577.374 kb on + strand, within GFF578at 577.374 kb on + strand, within GFF578at 577.379 kb on + strand, within GFF578at 577.379 kb on + strand, within GFF578at 577.382 kb on - strand, within GFF578at 577.382 kb on - strand, within GFF578at 577.382 kb on - strand, within GFF578at 577.382 kb on - strand, within GFF578at 577.382 kb on - strand, within GFF578at 577.382 kb on - strand, within GFF578at 577.382 kb on - strand, within GFF578at 577.382 kb on - strand, within GFF578at 577.382 kb on - strand, within GFF578at 577.382 kb on - strand, within GFF578at 577.382 kb on - strand, within GFF578at 577.382 kb on - strand, within GFF578at 577.392 kb on + strand, within GFF578at 577.407 kb on + strand, within GFF578at 577.443 kb on + strand, within GFF578at 577.443 kb on + strand, within GFF578at 577.451 kb on - strand, within GFF578at 577.463 kb on + strand, within GFF578at 577.466 kb on - strand, within GFF578at 577.517 kb on - strand, within GFF578at 577.517 kb on - strand, within GFF578at 577.523 kb on - strand, within GFF578at 577.531 kb on + strand, within GFF578at 577.531 kb on + strand, within GFF578at 577.539 kb on - strand, within GFF578at 577.560 kb on + strand, within GFF578at 577.568 kb on - strand, within GFF578at 577.596 kb on + strand, within GFF578at 577.652 kb on + strand, within GFF578at 577.668 kb on - strand, within GFF578at 577.695 kb on - strand, within GFF578at 577.709 kb on - strand, within GFF578at 577.714 kb on + strand, within GFF578at 577.722 kb on - strand, within GFF578at 577.723 kb on + strand, within GFF578at 577.731 kb on - strand, within GFF578at 577.774 kb on - strand, within GFF578at 577.774 kb on - strand, within GFF578at 577.807 kb on + strand, within GFF578at 577.837 kb on - strand, within GFF578at 577.847 kb on - strand, within GFF578at 577.857 kb on - strand, within GFF578at 577.858 kb on - strand, within GFF578at 577.896 kb on + strand, within GFF578at 577.904 kb on - strand, within GFF578at 577.909 kb on - strand, within GFF578at 577.930 kb on + strand, within GFF578at 577.957 kb on + strand, within GFF578at 577.960 kb on + strand, within GFF578at 577.960 kb on - strand, within GFF578at 577.960 kb on - strand, within GFF578at 577.962 kb on + strand, within GFF578at 577.976 kb on - strand, within GFF578

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate
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573,338 + GFF575 0.76 +0.4
573,338 + GFF575 0.76 -0.4
573,346 - GFF575 0.77 +0.6
573,826 - +1.1
573,831 - -0.3
573,924 + +0.8
574,041 + -0.5
574,046 + +0.4
574,091 + -0.4
574,225 + -0.8
574,269 + -0.1
574,285 + -0.6
574,320 - -0.9
574,346 + -0.3
574,400 + +0.1
574,441 + -0.9
574,449 - +0.3
574,484 - +0.2
574,586 - GFF577 0.13 +3.2
574,622 + GFF577 0.14 -0.1
574,624 + GFF577 0.15 +0.4
574,624 + GFF577 0.15 -1.2
574,632 - GFF577 0.15 +0.3
574,632 - GFF577 0.15 +1.2
574,702 - GFF577 0.17 +1.0
574,702 - GFF577 0.17 -0.0
574,738 - GFF577 0.19 -1.4
574,812 + GFF577 0.21 -0.5
574,837 - GFF577 0.22 -0.5
574,838 - GFF577 0.22 +0.6
574,846 - GFF577 0.22 -1.6
574,846 - GFF577 0.22 +1.0
574,846 - GFF577 0.22 -0.2
574,910 - GFF577 0.25 +0.3
574,936 + GFF577 0.26 +0.5
574,970 + GFF577 0.27 +0.2
574,973 - GFF577 0.27 -2.0
574,994 + GFF577 0.28 +0.1
575,011 + GFF577 0.28 -0.6
575,016 + GFF577 0.29 +1.5
575,052 - GFF577 0.30 +0.9
575,113 - GFF577 0.32 +0.5
575,158 - GFF577 0.34 -0.5
575,158 - GFF577 0.34 -0.3
575,174 + GFF577 0.34 -0.2
575,187 + GFF577 0.35 +1.1
575,213 + GFF577 0.36 -0.2
575,213 + GFF577 0.36 +1.6
575,239 + GFF577 0.37 -2.1
575,261 + GFF577 0.37 -1.0
575,265 - GFF577 0.37 -0.4
575,345 + GFF577 0.40 +0.3
575,345 + GFF577 0.40 -0.5
575,353 - GFF577 0.41 -0.5
575,376 - GFF577 0.41 +0.1
575,577 - GFF577 0.49 -0.3
575,623 - GFF577 0.50 +0.9
575,627 - GFF577 0.50 -0.9
575,628 + GFF577 0.50 -1.3
575,664 + GFF577 0.52 +1.2
575,683 + GFF577 0.52 +0.6
575,718 + GFF577 0.54 -1.1
575,736 - GFF577 0.54 -0.2
575,748 + GFF577 0.55 +0.3
575,766 - GFF577 0.55 -0.5
575,783 + GFF577 0.56 -0.7
575,791 - GFF577 0.56 +1.6
575,824 + GFF577 0.57 -0.8
575,864 + GFF577 0.59 -0.0
575,868 + GFF577 0.59 +0.2
575,868 + GFF577 0.59 -0.2
575,900 - GFF577 0.60 -0.5
575,906 + GFF577 0.60 -1.3
575,906 - GFF577 0.60 -0.6
575,914 - GFF577 0.61 +0.7
575,987 + GFF577 0.63 -0.6
575,987 + GFF577 0.63 +0.9
575,987 + GFF577 0.63 -0.4
575,995 - GFF577 0.64 -0.4
575,995 - GFF577 0.64 +0.3
575,995 - GFF577 0.64 +0.6
575,995 - GFF577 0.64 +1.7
576,017 - GFF577 0.64 -1.4
576,047 + GFF577 0.65 +0.6
576,047 + GFF577 0.65 -0.7
576,077 + GFF577 0.67 -0.4
576,077 + GFF577 0.67 +0.2
576,082 + GFF577 0.67 -2.2
576,082 + GFF577 0.67 -1.2
576,085 - GFF577 0.67 -1.2
576,085 - GFF577 0.67 +0.5
576,085 - GFF577 0.67 +1.6
576,090 - GFF577 0.67 -0.1
576,090 - GFF577 0.67 +0.1
576,090 - GFF577 0.67 +0.7
576,090 - GFF577 0.67 -0.3
576,117 - GFF577 0.68 -1.2
576,135 + GFF577 0.69 -1.1
576,136 + GFF577 0.69 +0.6
576,143 - GFF577 0.69 +1.6
576,195 - GFF577 0.71 -1.5
576,228 - GFF577 0.72 +2.0
576,256 + GFF577 0.73 -0.3
576,256 + GFF577 0.73 +0.5
576,256 + GFF577 0.73 -1.6
576,256 + GFF577 0.73 +0.3
576,256 + GFF577 0.73 +0.5
576,264 - GFF577 0.73 -0.7
576,264 - GFF577 0.73 -0.4
576,266 + GFF577 0.73 +0.1
576,266 + GFF577 0.73 +0.1
576,274 - GFF577 0.74 -0.1
576,274 - GFF577 0.74 -0.4
576,276 + GFF577 0.74 -1.9
576,289 - GFF577 0.74 +1.4
576,335 - GFF577 0.76 +0.6
576,339 + GFF577 0.76 +1.6
576,339 + GFF577 0.76 -0.4
576,340 + GFF577 0.76 -2.5
576,341 - GFF577 0.76 +0.2
576,347 - GFF577 0.76 +0.4
576,347 - GFF577 0.76 -0.9
576,353 - GFF577 0.76 -0.6
576,353 - GFF577 0.76 -0.1
576,356 - GFF577 0.77 -0.3
576,411 - GFF577 0.78 +0.5
576,480 - GFF577 0.81 +1.2
576,516 - GFF577 0.82 +0.5
576,534 + GFF577 0.83 +1.4
576,550 - GFF577 0.83 -2.1
576,550 - GFF577 0.83 +1.2
576,552 + GFF577 0.84 -1.2
576,560 - GFF577 0.84 -0.1
576,560 - GFF577 0.84 +0.9
576,573 - GFF577 0.84 -0.2
576,611 - GFF577 0.86 -0.3
576,612 + GFF577 0.86 -1.7
576,626 - GFF577 0.86 -1.9
576,627 - GFF577 0.86 -2.0
576,643 + GFF577 0.87 +0.0
576,643 + GFF577 0.87 -1.0
576,643 + GFF577 0.87 +1.1
576,643 + GFF577 0.87 +0.9
576,643 + GFF577 0.87 +0.5
576,651 - GFF577 0.87 +0.7
576,651 - GFF577 0.87 +0.7
576,651 - GFF577 0.87 +0.6
576,670 - GFF577 0.88 +0.4
576,725 - GFF577 0.90 +0.4
576,726 - GFF577 0.90 -0.1
576,768 - +1.6
576,801 + -0.6
576,882 - -0.6
576,894 + +0.2
576,938 - -0.2
577,100 + +1.0
577,100 + -0.6
577,100 + +1.1
577,100 + +0.1
577,100 + -2.4
577,100 + +1.0
577,121 + +0.1
577,149 - -0.1
577,153 + -0.3
577,172 - -0.2
577,172 - +0.6
577,188 + +0.5
577,252 + GFF578 0.12 -0.5
577,265 - GFF578 0.13 +0.4
577,307 - GFF578 0.16 -1.3
577,343 + GFF578 0.18 +0.8
577,343 + GFF578 0.18 +0.8
577,343 + GFF578 0.18 -0.4
577,343 + GFF578 0.18 +0.7
577,351 - GFF578 0.19 +0.8
577,351 - GFF578 0.19 -1.6
577,351 - GFF578 0.19 -0.1
577,351 - GFF578 0.19 +0.0
577,351 - GFF578 0.19 +0.8
577,374 + GFF578 0.20 -0.4
577,374 + GFF578 0.20 -0.3
577,374 + GFF578 0.20 -0.7
577,374 + GFF578 0.20 +0.3
577,374 + GFF578 0.20 -0.5
577,374 + GFF578 0.20 +0.6
577,374 + GFF578 0.20 -0.4
577,374 + GFF578 0.20 -1.9
577,374 + GFF578 0.20 +0.3
577,374 + GFF578 0.20 -1.3
577,379 + GFF578 0.21 -0.8
577,379 + GFF578 0.21 +0.1
577,382 - GFF578 0.21 -0.3
577,382 - GFF578 0.21 -0.8
577,382 - GFF578 0.21 -0.0
577,382 - GFF578 0.21 +0.1
577,382 - GFF578 0.21 -0.1
577,382 - GFF578 0.21 -0.7
577,382 - GFF578 0.21 -0.2
577,382 - GFF578 0.21 +0.1
577,382 - GFF578 0.21 +0.7
577,382 - GFF578 0.21 +0.1
577,382 - GFF578 0.21 -1.6
577,382 - GFF578 0.21 -0.5
577,392 + GFF578 0.22 +0.2
577,407 + GFF578 0.23 -1.7
577,443 + GFF578 0.25 -2.6
577,443 + GFF578 0.25 +0.6
577,451 - GFF578 0.26 +0.1
577,463 + GFF578 0.27 -0.1
577,466 - GFF578 0.27 -0.1
577,517 - GFF578 0.31 +0.2
577,517 - GFF578 0.31 +0.4
577,523 - GFF578 0.31 +0.4
577,531 + GFF578 0.32 +0.5
577,531 + GFF578 0.32 -1.6
577,539 - GFF578 0.32 -0.3
577,560 + GFF578 0.34 +0.2
577,568 - GFF578 0.34 -0.8
577,596 + GFF578 0.36 -0.9
577,652 + GFF578 0.40 +0.4
577,668 - GFF578 0.41 -2.3
577,695 - GFF578 0.43 -1.1
577,709 - GFF578 0.44 -1.3
577,714 + GFF578 0.45 -0.8
577,722 - GFF578 0.45 -1.7
577,723 + GFF578 0.45 +1.0
577,731 - GFF578 0.46 +0.1
577,774 - GFF578 0.49 +0.1
577,774 - GFF578 0.49 +0.9
577,807 + GFF578 0.51 +0.7
577,837 - GFF578 0.53 -0.4
577,847 - GFF578 0.54 -0.1
577,857 - GFF578 0.55 -2.3
577,858 - GFF578 0.55 +0.3
577,896 + GFF578 0.58 -1.9
577,904 - GFF578 0.58 -0.7
577,909 - GFF578 0.59 -0.9
577,930 + GFF578 0.60 -1.3
577,957 + GFF578 0.62 -0.2
577,960 + GFF578 0.62 +0.1
577,960 - GFF578 0.62 +0.6
577,960 - GFF578 0.62 +0.9
577,962 + GFF578 0.62 -2.1
577,976 - GFF578 0.63 -0.5

Or see this region's nucleotide sequence