Strain Fitness in Sphingobium sp. HT1-2 around GFF574

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF572 and GFF573 are separated by 146 nucleotidesGFF573 and GFF574 overlap by 44 nucleotidesGFF574 and GFF575 are separated by 90 nucleotides GFF572 - tRNA-Ser-CGA, at 570,393 to 570,482 GFF572 GFF573 - hypothetical protein, at 570,629 to 571,000 GFF573 GFF574 - hypothetical protein, at 570,957 to 571,745 GFF574 GFF575 - oligopeptide transporter, at 571,836 to 573,800 GFF575 Position (kb) 570 571 572Strain fitness (log2 ratio) -2 -1 0 1 2 3at 570.025 kb on + strandat 570.047 kb on - strandat 570.065 kb on - strandat 570.082 kb on - strandat 570.129 kb on - strandat 570.133 kb on + strandat 570.140 kb on + strandat 570.196 kb on - strandat 570.224 kb on - strandat 570.614 kb on + strandat 570.626 kb on - strandat 570.641 kb on + strandat 570.666 kb on + strandat 570.689 kb on + strand, within GFF573at 570.689 kb on - strand, within GFF573at 570.699 kb on + strand, within GFF573at 570.710 kb on - strand, within GFF573at 570.743 kb on + strand, within GFF573at 570.745 kb on + strand, within GFF573at 570.748 kb on - strand, within GFF573at 570.761 kb on + strand, within GFF573at 570.761 kb on + strand, within GFF573at 570.769 kb on - strand, within GFF573at 570.784 kb on - strand, within GFF573at 570.803 kb on - strand, within GFF573at 570.836 kb on - strand, within GFF573at 570.839 kb on - strand, within GFF573at 570.854 kb on + strand, within GFF573at 570.862 kb on + strand, within GFF573at 570.870 kb on - strand, within GFF573at 570.912 kb on - strand, within GFF573at 570.994 kb on + strandat 570.997 kb on - strandat 571.002 kb on - strandat 571.024 kb on + strandat 571.024 kb on + strandat 571.024 kb on + strandat 571.024 kb on + strandat 571.024 kb on + strandat 571.024 kb on + strandat 571.024 kb on + strandat 571.029 kb on + strandat 571.032 kb on - strandat 571.032 kb on - strandat 571.042 kb on - strand, within GFF574at 571.055 kb on + strand, within GFF574at 571.063 kb on - strand, within GFF574at 571.071 kb on - strand, within GFF574at 571.094 kb on + strand, within GFF574at 571.099 kb on + strand, within GFF574at 571.100 kb on + strand, within GFF574at 571.117 kb on - strand, within GFF574at 571.117 kb on - strand, within GFF574at 571.117 kb on - strand, within GFF574at 571.127 kb on - strand, within GFF574at 571.202 kb on + strand, within GFF574at 571.202 kb on + strand, within GFF574at 571.213 kb on + strand, within GFF574at 571.213 kb on + strand, within GFF574at 571.235 kb on + strand, within GFF574at 571.243 kb on - strand, within GFF574at 571.246 kb on + strand, within GFF574at 571.266 kb on - strand, within GFF574at 571.266 kb on - strand, within GFF574at 571.302 kb on - strand, within GFF574at 571.302 kb on - strand, within GFF574at 571.310 kb on - strand, within GFF574at 571.328 kb on + strand, within GFF574at 571.328 kb on + strand, within GFF574at 571.328 kb on + strand, within GFF574at 571.328 kb on + strand, within GFF574at 571.336 kb on - strand, within GFF574at 571.336 kb on - strand, within GFF574at 571.336 kb on - strand, within GFF574at 571.336 kb on - strand, within GFF574at 571.346 kb on + strand, within GFF574at 571.393 kb on + strand, within GFF574at 571.397 kb on + strand, within GFF574at 571.400 kb on - strand, within GFF574at 571.405 kb on - strand, within GFF574at 571.416 kb on + strand, within GFF574at 571.417 kb on + strand, within GFF574at 571.454 kb on - strand, within GFF574at 571.458 kb on - strand, within GFF574at 571.458 kb on - strand, within GFF574at 571.477 kb on + strand, within GFF574at 571.483 kb on + strand, within GFF574at 571.483 kb on + strand, within GFF574at 571.487 kb on - strand, within GFF574at 571.487 kb on - strand, within GFF574at 571.539 kb on + strand, within GFF574at 571.550 kb on + strand, within GFF574at 571.573 kb on + strand, within GFF574at 571.602 kb on + strand, within GFF574at 571.621 kb on - strand, within GFF574at 571.623 kb on + strand, within GFF574at 571.623 kb on + strand, within GFF574at 571.626 kb on - strand, within GFF574at 571.628 kb on + strand, within GFF574at 571.628 kb on + strand, within GFF574at 571.631 kb on - strand, within GFF574at 571.636 kb on - strand, within GFF574at 571.636 kb on - strand, within GFF574at 571.636 kb on - strand, within GFF574at 571.636 kb on - strand, within GFF574at 571.636 kb on - strand, within GFF574at 571.663 kb on + strand, within GFF574at 571.663 kb on + strand, within GFF574at 571.671 kb on - strandat 571.671 kb on - strandat 571.675 kb on + strandat 571.675 kb on + strandat 571.675 kb on + strandat 571.675 kb on + strandat 571.675 kb on + strandat 571.683 kb on - strandat 571.683 kb on - strandat 571.683 kb on - strandat 571.683 kb on - strandat 571.685 kb on + strandat 571.693 kb on - strandat 571.693 kb on - strandat 571.696 kb on + strandat 571.696 kb on + strandat 571.704 kb on - strandat 571.708 kb on - strandat 571.708 kb on - strandat 571.710 kb on + strandat 571.713 kb on - strandat 571.713 kb on - strandat 571.715 kb on + strandat 571.741 kb on - strandat 571.761 kb on + strandat 571.774 kb on - strandat 571.774 kb on - strandat 571.850 kb on + strandat 572.057 kb on - strand, within GFF575at 572.245 kb on - strand, within GFF575

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate
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570,025 + -1.4
570,047 - -0.8
570,065 - +0.1
570,082 - -0.1
570,129 - +0.4
570,133 + +0.2
570,140 + -0.6
570,196 - +1.3
570,224 - +0.7
570,614 + +0.5
570,626 - +0.2
570,641 + -0.3
570,666 + +0.6
570,689 + GFF573 0.16 +0.1
570,689 - GFF573 0.16 -0.3
570,699 + GFF573 0.19 +0.8
570,710 - GFF573 0.22 -0.3
570,743 + GFF573 0.31 +0.5
570,745 + GFF573 0.31 +2.8
570,748 - GFF573 0.32 +0.4
570,761 + GFF573 0.35 +0.1
570,761 + GFF573 0.35 +0.0
570,769 - GFF573 0.38 -0.7
570,784 - GFF573 0.42 +0.7
570,803 - GFF573 0.47 +1.0
570,836 - GFF573 0.56 +0.1
570,839 - GFF573 0.56 +0.9
570,854 + GFF573 0.60 +1.9
570,862 + GFF573 0.63 -0.1
570,870 - GFF573 0.65 +0.6
570,912 - GFF573 0.76 -0.2
570,994 + -0.2
570,997 - -0.2
571,002 - +0.1
571,024 + -0.4
571,024 + -0.6
571,024 + +0.2
571,024 + +0.9
571,024 + +2.7
571,024 + +1.1
571,024 + -0.9
571,029 + -0.4
571,032 - +0.4
571,032 - -1.3
571,042 - GFF574 0.11 -1.6
571,055 + GFF574 0.12 +0.1
571,063 - GFF574 0.13 +1.0
571,071 - GFF574 0.14 +0.6
571,094 + GFF574 0.17 -0.5
571,099 + GFF574 0.18 -0.2
571,100 + GFF574 0.18 -0.2
571,117 - GFF574 0.20 -0.2
571,117 - GFF574 0.20 +0.4
571,117 - GFF574 0.20 +0.2
571,127 - GFF574 0.22 -0.8
571,202 + GFF574 0.31 -2.2
571,202 + GFF574 0.31 -0.2
571,213 + GFF574 0.32 +2.1
571,213 + GFF574 0.32 +0.8
571,235 + GFF574 0.35 -0.1
571,243 - GFF574 0.36 -0.4
571,246 + GFF574 0.37 -0.5
571,266 - GFF574 0.39 +0.4
571,266 - GFF574 0.39 -0.5
571,302 - GFF574 0.44 -0.3
571,302 - GFF574 0.44 -0.1
571,310 - GFF574 0.45 -1.7
571,328 + GFF574 0.47 -0.8
571,328 + GFF574 0.47 +1.0
571,328 + GFF574 0.47 -0.5
571,328 + GFF574 0.47 -0.6
571,336 - GFF574 0.48 -1.2
571,336 - GFF574 0.48 -0.0
571,336 - GFF574 0.48 +0.4
571,336 - GFF574 0.48 -1.6
571,346 + GFF574 0.49 +0.5
571,393 + GFF574 0.55 -1.0
571,397 + GFF574 0.56 -0.5
571,400 - GFF574 0.56 -1.0
571,405 - GFF574 0.57 -0.8
571,416 + GFF574 0.58 +0.1
571,417 + GFF574 0.58 -0.3
571,454 - GFF574 0.63 -0.1
571,458 - GFF574 0.63 -1.1
571,458 - GFF574 0.63 -2.4
571,477 + GFF574 0.66 +0.3
571,483 + GFF574 0.67 -1.2
571,483 + GFF574 0.67 -0.1
571,487 - GFF574 0.67 +0.3
571,487 - GFF574 0.67 +0.1
571,539 + GFF574 0.74 -0.2
571,550 + GFF574 0.75 +0.9
571,573 + GFF574 0.78 +0.3
571,602 + GFF574 0.82 -1.6
571,621 - GFF574 0.84 +0.7
571,623 + GFF574 0.84 +1.2
571,623 + GFF574 0.84 -0.7
571,626 - GFF574 0.85 +0.8
571,628 + GFF574 0.85 -0.4
571,628 + GFF574 0.85 -0.6
571,631 - GFF574 0.85 -0.7
571,636 - GFF574 0.86 +0.1
571,636 - GFF574 0.86 -0.2
571,636 - GFF574 0.86 +0.2
571,636 - GFF574 0.86 +0.2
571,636 - GFF574 0.86 +2.3
571,663 + GFF574 0.89 -0.2
571,663 + GFF574 0.89 -0.6
571,671 - -1.0
571,671 - +0.4
571,675 + +0.6
571,675 + -0.1
571,675 + +0.1
571,675 + +1.7
571,675 + -0.1
571,683 - -0.1
571,683 - +0.2
571,683 - +1.4
571,683 - -0.0
571,685 + -1.0
571,693 - +0.4
571,693 - -1.0
571,696 + +0.2
571,696 + +0.9
571,704 - +0.9
571,708 - +0.6
571,708 - +1.0
571,710 + -0.4
571,713 - -0.3
571,713 - +1.6
571,715 + +0.6
571,741 - -0.2
571,761 + +0.3
571,774 - -0.8
571,774 - -1.4
571,850 + +0.1
572,057 - GFF575 0.11 -0.6
572,245 - GFF575 0.21 -0.6

Or see this region's nucleotide sequence