Strain Fitness in Sphingobium sp. HT1-2 around GFF5305

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
5,295,687	-				-0.5
5,295,687	-				-0.2
5,295,687	-				+1.4
5,295,701	+				-0.2
5,295,703	+				+0.4
5,295,709	-				-0.1
5,295,709	-				+1.0
5,295,709	-				-0.9
5,295,711	-				+1.5
5,295,760	+				+0.1
5,295,797	+		GFF5304	0.11	+0.4
5,295,818	-		GFF5304	0.13	+0.7
5,295,847	+		GFF5304	0.17	-1.9
5,295,847	+		GFF5304	0.17	+0.3
5,295,847	+		GFF5304	0.17	+0.4
5,295,852	+		GFF5304	0.18	+0.3
5,295,852	+		GFF5304	0.18	-0.1
5,295,854	+		GFF5304	0.18	-0.9
5,295,855	-		GFF5304	0.18	-0.5
5,295,860	-		GFF5304	0.19	-0.5
5,295,862	-		GFF5304	0.19	-1.9
5,295,884	-		GFF5304	0.22	-1.2
5,295,884	-		GFF5304	0.22	-1.1
5,295,916	-		GFF5304	0.26	-0.9
5,295,933	-		GFF5304	0.28	-1.1
5,295,935	+		GFF5304	0.28	-0.3
5,295,935	+		GFF5304	0.28	-0.6
5,295,945	+		GFF5304	0.30	+0.4
5,295,945	+		GFF5304	0.30	-1.1
5,295,945	+		GFF5304	0.30	+0.6
5,295,953	-		GFF5304	0.31	-0.5
5,295,958	+		GFF5304	0.31	-0.0
5,295,966	-		GFF5304	0.32	+0.9
5,296,113	-		GFF5304	0.51	+0.4
5,296,116	-		GFF5304	0.51	-0.6
5,296,163	+		GFF5304	0.57	-0.6
5,296,173	+		GFF5304	0.58	-2.4
5,296,249	+		GFF5304	0.68	-0.6
5,296,249	+		GFF5304	0.68	-0.2
5,296,257	-		GFF5304	0.69	-0.4
5,296,301	+		GFF5304	0.75	+0.7
5,296,321	+		GFF5304	0.77	+0.2
5,296,390	+		GFF5304	0.86	+0.4
5,296,403	-		GFF5304	0.88	-0.6
5,296,419	+		GFF5304	0.90	+0.0
5,296,448	-				+0.2
5,296,494	+				-0.6
5,296,494	+				+0.4
5,296,494	+				-0.3
5,296,501	+				+0.8
5,296,501	+				+1.0
5,296,501	+				-0.4
5,296,502	-				-0.9
5,296,509	-				-0.4
5,296,509	-				-1.1
5,296,509	-				-2.5
5,296,509	-				-0.2
5,296,513	+				-0.9
5,296,515	+				-0.9
5,296,531	-				-0.9
5,296,534	+				+0.3
5,296,534	+				-1.0
5,296,542	-				+0.2
5,296,542	-				-0.3
5,296,559	+				-0.8
5,296,609	+		GFF5305	0.14	-1.1
5,296,617	+		GFF5305	0.15	-0.6
5,296,627	-		GFF5305	0.16	-0.5
5,296,640	+		GFF5305	0.18	+0.1
5,296,646	+		GFF5305	0.19	+0.6
5,296,646	+		GFF5305	0.19	-0.1
5,296,666	+		GFF5305	0.21	-0.7
5,296,712	+		GFF5305	0.27	-0.3
5,296,712	+		GFF5305	0.27	-0.8
5,296,712	+		GFF5305	0.27	-0.1
5,296,720	+		GFF5305	0.28	+0.2
5,296,720	+		GFF5305	0.28	-1.5
5,296,720	+		GFF5305	0.28	-0.3
5,296,720	+		GFF5305	0.28	-0.2
5,296,720	+		GFF5305	0.28	-0.4
5,296,720	-		GFF5305	0.28	-0.3
5,296,728	-		GFF5305	0.29	+0.0
5,296,728	-		GFF5305	0.29	-0.1
5,296,728	-		GFF5305	0.29	+0.2
5,296,758	+		GFF5305	0.33	-0.2
5,296,786	+		GFF5305	0.37	-2.2
5,296,791	+		GFF5305	0.37	+0.1
5,296,794	-		GFF5305	0.38	-1.1
5,296,814	+		GFF5305	0.40	-0.6
5,296,827	+		GFF5305	0.42	+0.2
5,296,835	-		GFF5305	0.43	-0.5
5,296,842	+		GFF5305	0.44	-1.2
5,296,842	+		GFF5305	0.44	-0.7
5,296,842	+		GFF5305	0.44	-0.6
5,296,842	+		GFF5305	0.44	-0.3
5,296,850	-		GFF5305	0.45	-2.0
5,296,850	-		GFF5305	0.45	-1.1
5,296,850	-		GFF5305	0.45	-1.2
5,296,850	-		GFF5305	0.45	+0.4
5,296,850	-		GFF5305	0.45	-1.0
5,296,860	+		GFF5305	0.46	+0.4
5,296,868	-		GFF5305	0.47	-1.9
5,296,905	+		GFF5305	0.52	-0.5
5,296,927	+		GFF5305	0.54	-0.3
5,296,944	-		GFF5305	0.57	-2.6
5,296,984	+		GFF5305	0.62	-1.1
5,297,100	+		GFF5305	0.76	+0.5
5,297,104	-		GFF5305	0.77	+0.3
5,297,114	-		GFF5305	0.78	+0.9
5,297,118	+		GFF5305	0.79	+1.4
5,297,120	+		GFF5305	0.79	+0.7
5,297,146	-		GFF5305	0.82	-0.1
5,297,146	-		GFF5305	0.82	-1.6
5,297,173	+		GFF5305	0.86	-0.5
5,297,174	-		GFF5305	0.86	+0.7
5,297,174	-		GFF5305	0.86	-1.2
5,297,176	+		GFF5305	0.86	-0.2
5,297,184	-		GFF5305	0.87	-1.8
5,297,184	-		GFF5305	0.87	+0.2
5,297,186	+		GFF5305	0.87	+0.5
5,297,192	+		GFF5305	0.88	-0.7
5,297,194	-		GFF5305	0.88	-1.5
5,297,197	+		GFF5305	0.89	-0.7
5,297,197	+		GFF5305	0.89	+0.8
5,297,197	+		GFF5305	0.89	-0.4
5,297,197	+		GFF5305	0.89	+0.2
5,297,197	+		GFF5305	0.89	+1.3
5,297,197	+		GFF5305	0.89	-1.3
5,297,197	+		GFF5305	0.89	-1.3
5,297,197	+		GFF5305	0.89	+0.7
5,297,200	-		GFF5305	0.89	-0.9
5,297,201	-		GFF5305	0.89	+0.1
5,297,205	-		GFF5305	0.90	+0.1
5,297,205	-		GFF5305	0.90	-2.0
5,297,205	-		GFF5305	0.90	-1.4
5,297,205	-		GFF5305	0.90	-1.6
5,297,205	-		GFF5305	0.90	-0.3
5,297,205	-		GFF5305	0.90	-0.6
5,297,205	-		GFF5305	0.90	+1.2
5,297,205	-		GFF5305	0.90	+0.4
5,297,205	-		GFF5305	0.90	-1.5
5,297,205	-		GFF5305	0.90	+0.6
5,297,219	+				-0.3
5,297,219	+				-0.3
5,297,219	+				-0.9
5,297,219	+				+0.2
5,297,219	+				-1.8
5,297,219	+				-0.4
5,297,219	+				-0.2
5,297,219	+				-1.3
5,297,219	+				-1.0
5,297,227	+				-1.0
5,297,227	+				-0.9
5,297,227	+				+0.3
5,297,227	+				-0.3
5,297,227	-				+0.0
5,297,227	-				-1.6
5,297,227	-				-0.6
5,297,227	-				-0.4
5,297,227	-				-0.9
5,297,227	-				-0.4
5,297,227	-				+0.6
5,297,227	-				-1.0
5,297,227	-				+0.5
5,297,227	-				+0.8
5,297,227	-				-0.5
5,297,227	-				+1.1
5,297,227	-				-2.1
5,297,227	-				-0.6
5,297,227	-				+0.1
5,297,227	-				-0.2
5,297,227	-				-2.0
5,297,227	-				-1.6
5,297,227	-				-0.6
5,297,227	-				-1.6
5,297,227	-				-0.5
5,297,238	+				+0.1
5,297,242	+				-0.5
5,297,242	+				+0.3
5,297,246	-				-0.3
5,297,246	-				+0.1
5,297,280	-				-1.1
5,297,282	-				-2.2
5,297,285	-				-1.4
5,297,297	+				+0.5
5,297,300	-				-1.1
5,297,300	-				-0.3
5,297,300	-				-0.8
5,297,305	-				-0.9
5,297,308	+				-2.0
5,297,331	+				-0.2
5,297,331	+				-0.2
5,297,331	+				-0.8
5,297,331	+				-0.8
5,297,331	+				-0.9
5,297,331	+				+0.0
5,297,331	+				-0.4
5,297,331	+				+0.9
5,297,339	-				-1.4
5,297,339	-				-0.1
5,297,339	-				-1.2
5,297,339	-				-1.9
5,297,339	-				-0.8
5,297,341	+				+0.2
5,297,341	+				+0.3
5,297,343	-				+0.0
5,297,343	-				-1.3
5,297,344	-				+1.1
5,297,346	+				-1.6
5,297,346	+				+0.2
5,297,346	+				-0.2
5,297,346	+				-1.5
5,297,346	+				-0.6
5,297,346	+				-1.6
5,297,354	-		GFF5306	0.10	+0.1
5,297,367	+		GFF5306	0.12	-1.8
5,297,372	+		GFF5306	0.13	-0.1
5,297,377	+		GFF5306	0.14	-0.6
5,297,377	+		GFF5306	0.14	-0.9
5,297,377	+		GFF5306	0.14	-1.6
5,297,377	+		GFF5306	0.14	-0.7
5,297,377	+		GFF5306	0.14	+1.5
5,297,377	+		GFF5306	0.14	-0.1
5,297,377	+		GFF5306	0.14	+0.7
5,297,377	+		GFF5306	0.14	-0.5
5,297,377	+		GFF5306	0.14	+0.1
5,297,385	-		GFF5306	0.15	+0.5
5,297,385	-		GFF5306	0.15	+0.2
5,297,385	-		GFF5306	0.15	-0.4
5,297,391	+		GFF5306	0.16	+0.2
5,297,396	+		GFF5306	0.17	-1.5
5,297,396	+		GFF5306	0.17	-1.5
5,297,396	+		GFF5306	0.17	-1.1
5,297,401	+		GFF5306	0.18	-0.1
5,297,401	+		GFF5306	0.18	-0.0
5,297,401	+		GFF5306	0.18	-2.0
5,297,404	-		GFF5306	0.18	+0.3
5,297,408	+		GFF5306	0.19	-1.8
5,297,409	-		GFF5306	0.19	-2.8
5,297,409	-		GFF5306	0.19	-2.9
5,297,409	-		GFF5306	0.19	+0.9
5,297,409	-		GFF5306	0.19	+0.5
5,297,409	-		GFF5306	0.19	-2.3
5,297,409	-		GFF5306	0.19	-0.1
5,297,409	-		GFF5306	0.19	-2.4
5,297,416	-		GFF5306	0.20	+0.2
5,297,435	+		GFF5306	0.23	-1.3
5,297,435	+		GFF5306	0.23	-0.4
5,297,435	+		GFF5306	0.23	+0.7
5,297,437	+		GFF5306	0.23	+0.0
5,297,437	+		GFF5306	0.23	-1.4
5,297,443	-		GFF5306	0.24	-0.1
5,297,445	-		GFF5306	0.24	-0.4
5,297,445	-		GFF5306	0.24	-1.8
5,297,445	-		GFF5306	0.24	-1.0
5,297,450	-		GFF5306	0.25	-1.7
5,297,457	-		GFF5306	0.26	-0.1
5,297,489	-		GFF5306	0.31	+0.5
5,297,493	-		GFF5306	0.32	+0.5
5,297,496	-		GFF5306	0.32	-1.8
5,297,496	-		GFF5306	0.32	-2.1
5,297,503	-		GFF5306	0.33	-1.8
5,297,507	+		GFF5306	0.34	-2.1
5,297,528	+		GFF5306	0.37	+0.6
5,297,530	+		GFF5306	0.37	-1.0
5,297,534	-		GFF5306	0.38	-0.2
5,297,534	-		GFF5306	0.38	-0.9
5,297,536	-		GFF5306	0.38	-1.1
5,297,554	-		GFF5306	0.41	+0.4
5,297,582	+		GFF5306	0.45	-0.1
5,297,582	+		GFF5306	0.45	-1.1
5,297,585	-		GFF5306	0.45	+1.1
5,297,590	-		GFF5306	0.46	-0.1
5,297,590	-		GFF5306	0.46	-0.2
5,297,598	-		GFF5306	0.47	-2.1
5,297,613	-		GFF5306	0.50	-2.0
5,297,614	+		GFF5306	0.50	-0.2
5,297,621	+		GFF5306	0.51	+0.4
5,297,632	+		GFF5306	0.53	-0.3
5,297,634	-		GFF5306	0.53	-1.9
5,297,638	+		GFF5306	0.53	-0.8
5,297,640	-		GFF5306	0.54	-0.4
5,297,651	+		GFF5306	0.55	-1.5
5,297,661	-		GFF5306	0.57	-1.5
5,297,709	+		GFF5306	0.64	+0.7
5,297,738	+		GFF5306	0.69	-0.2
5,297,749	+		GFF5306	0.70	-0.3
5,297,755	-		GFF5306	0.71	-0.7
5,297,813	-		GFF5306	0.80	-0.2
5,297,831	-		GFF5306	0.83	+0.3
5,297,847	+		GFF5306	0.85	-0.6
5,297,855	-		GFF5306	0.86	-1.6
5,297,862	+		GFF5306	0.87	+0.4
5,297,945	+				+0.5
5,297,945	-				-1.3
5,297,945	-				-0.5
5,297,956	+				-1.1
5,297,971	+				-1.9
5,297,982	+				+0.9
5,297,987	+				+0.2
5,297,988	+				-0.4
5,298,017	-				-1.4
5,298,024	+				+2.1
5,298,031	+				-1.1
5,298,032	-				-0.8
5,298,032	-				-1.1
5,298,041	+				-1.6
5,298,046	+				+0.2
5,298,049	-				-2.1
5,298,049	-				-0.2
5,298,086	-		GFF5307	0.11	-0.8
5,298,104	-		GFF5307	0.12	-2.3
5,298,132	-		GFF5307	0.15	-3.1
5,298,153	-		GFF5307	0.16	-1.1
5,298,160	+		GFF5307	0.17	-0.2
5,298,164	+		GFF5307	0.17	-2.1
5,298,219	-		GFF5307	0.21	-0.3
5,298,240	+		GFF5307	0.23	+0.8
5,298,245	+		GFF5307	0.23	-1.3
5,298,253	-		GFF5307	0.24	-0.5
5,298,272	+		GFF5307	0.25	-0.3
5,298,272	+		GFF5307	0.25	+0.7
5,298,272	+		GFF5307	0.25	-0.3
5,298,280	-		GFF5307	0.26	-0.8
5,298,280	-		GFF5307	0.26	-0.5
5,298,280	-		GFF5307	0.26	+1.3
5,298,280	-		GFF5307	0.26	-0.9