Strain Fitness in Sphingobium sp. HT1-2 around GFF5197

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
5,193,235	+		GFF5196	0.29	-0.1
5,193,248	+		GFF5196	0.31	+0.8
5,193,253	+		GFF5196	0.31	+0.2
5,193,253	+		GFF5196	0.31	+0.5
5,193,256	-		GFF5196	0.32	-0.9
5,193,261	-		GFF5196	0.32	-1.0
5,193,261	-		GFF5196	0.32	+1.6
5,193,273	+		GFF5196	0.34	-1.5
5,193,304	-		GFF5196	0.37	-1.2
5,193,304	-		GFF5196	0.37	-0.8
5,193,306	+		GFF5196	0.37	+0.1
5,193,345	+		GFF5196	0.42	+0.1
5,193,345	+		GFF5196	0.42	+1.7
5,193,353	-		GFF5196	0.43	-1.4
5,193,376	-		GFF5196	0.45	-0.1
5,193,421	+		GFF5196	0.51	+1.0
5,193,434	+		GFF5196	0.52	+1.5
5,193,473	+		GFF5196	0.56	+0.6
5,193,473	+		GFF5196	0.56	-0.2
5,193,473	+		GFF5196	0.56	+0.2
5,193,474	-		GFF5196	0.57	-0.3
5,193,481	-		GFF5196	0.57	-0.1
5,193,481	-		GFF5196	0.57	-0.1
5,193,488	+		GFF5196	0.58	-1.5
5,193,547	+		GFF5196	0.65	-0.3
5,193,581	-		GFF5196	0.69	+1.0
5,193,608	-		GFF5196	0.72	-0.5
5,193,638	-		GFF5196	0.75	+1.1
5,193,641	+		GFF5196	0.76	-0.8
5,193,661	+		GFF5196	0.78	-0.5
5,193,661	+		GFF5196	0.78	-1.6
5,193,661	+		GFF5196	0.78	-0.1
5,193,661	+		GFF5196	0.78	+0.8
5,193,682	-		GFF5196	0.80	-0.4
5,193,687	+		GFF5196	0.81	+0.5
5,193,687	+		GFF5196	0.81	-0.2
5,193,687	-		GFF5196	0.81	-1.4
5,193,695	-		GFF5196	0.82	+0.1
5,193,711	+		GFF5196	0.84	-0.1
5,193,724	-		GFF5196	0.85	+0.4
5,193,759	+		GFF5196	0.89	+1.2
5,193,759	+		GFF5196	0.89	-0.9
5,193,767	-				-1.4
5,193,767	-				-0.4
5,193,767	-				-1.6
5,193,782	+				-0.1
5,193,869	-				-0.2
5,193,869	-				-0.9
5,193,869	-				-0.6
5,193,869	-				+0.7
5,194,110	+				+0.1
5,194,110	+				+0.3
5,194,130	-				-0.6
5,194,213	-				+0.1
5,194,233	-				+1.0
5,194,233	-				+1.3
5,194,268	+				-0.4
5,194,268	+				-0.1
5,194,268	+				+0.1
5,194,268	+				+0.3
5,194,268	+				+0.9
5,194,268	+				+0.1
5,194,275	+				+0.8
5,194,276	-				-1.0
5,194,276	-				-1.1
5,194,276	-				-0.2
5,194,276	-				-0.7
5,194,281	-				-0.6
5,194,281	-				+0.4
5,194,282	+				-1.1
5,194,282	+				+0.0
5,194,288	-				-0.5
5,194,288	-				-0.7
5,194,288	-				+0.3
5,194,290	-				-1.6
5,194,295	+				-1.8
5,194,309	+				+0.2
5,194,331	+				-0.1
5,194,342	+				-0.8
5,194,342	+				-0.7
5,194,350	-				+0.2
5,194,350	-				+1.7
5,194,350	-				-0.5
5,194,351	+				+1.3
5,194,359	-				-0.1
5,194,362	+				-0.6
5,194,400	-				-1.2
5,194,412	-				+0.1
5,194,414	-		GFF5197	0.10	+1.1
5,194,421	-		GFF5197	0.10	+0.5
5,194,430	-		GFF5197	0.11	+0.7
5,194,432	+		GFF5197	0.11	-0.4
5,194,432	+		GFF5197	0.11	-1.8
5,194,440	-		GFF5197	0.12	-1.9
5,194,460	+		GFF5197	0.13	+0.4
5,194,460	-		GFF5197	0.13	-0.0
5,194,461	-		GFF5197	0.13	-1.2
5,194,468	-		GFF5197	0.13	-0.6
5,194,521	+		GFF5197	0.16	-0.2
5,194,542	-		GFF5197	0.17	-0.1
5,194,557	+		GFF5197	0.18	-0.6
5,194,565	-		GFF5197	0.19	-0.1
5,194,565	-		GFF5197	0.19	-1.1
5,194,602	+		GFF5197	0.21	-0.2
5,194,605	-		GFF5197	0.21	+0.4
5,194,605	-		GFF5197	0.21	+0.1
5,194,620	-		GFF5197	0.22	+0.2
5,194,644	+		GFF5197	0.23	+1.1
5,194,732	-		GFF5197	0.28	-0.3
5,194,749	+		GFF5197	0.29	-0.5
5,194,757	-		GFF5197	0.29	+0.4
5,194,757	-		GFF5197	0.29	-0.9
5,194,758	-		GFF5197	0.29	+0.4
5,194,784	+		GFF5197	0.31	-1.8
5,194,795	+		GFF5197	0.32	+0.4
5,194,807	+		GFF5197	0.32	+0.1
5,194,807	+		GFF5197	0.32	-2.1
5,194,865	+		GFF5197	0.35	-0.1
5,194,866	+		GFF5197	0.36	-0.4
5,194,873	-		GFF5197	0.36	-0.9
5,194,873	-		GFF5197	0.36	+0.1
5,194,876	+		GFF5197	0.36	+0.0
5,194,884	-		GFF5197	0.37	-1.2
5,194,899	+		GFF5197	0.37	+0.8
5,194,899	+		GFF5197	0.37	-0.9
5,194,899	+		GFF5197	0.37	-0.6
5,194,899	+		GFF5197	0.37	-1.9
5,194,899	+		GFF5197	0.37	-0.2
5,194,899	+		GFF5197	0.37	-1.1
5,194,899	+		GFF5197	0.37	+0.1
5,194,899	+		GFF5197	0.37	+0.4
5,194,899	+		GFF5197	0.37	+0.8
5,194,899	+		GFF5197	0.37	+0.5
5,194,900	+		GFF5197	0.37	+0.4
5,194,907	-		GFF5197	0.38	+1.1
5,194,907	-		GFF5197	0.38	+0.1
5,194,907	-		GFF5197	0.38	+0.7
5,194,907	-		GFF5197	0.38	-0.3
5,194,907	-		GFF5197	0.38	-1.1
5,194,907	-		GFF5197	0.38	-0.6
5,194,907	-		GFF5197	0.38	-0.6
5,194,907	-		GFF5197	0.38	-0.6
5,194,907	-		GFF5197	0.38	-0.8
5,194,907	-		GFF5197	0.38	+0.1
5,194,907	-		GFF5197	0.38	+1.1
5,194,907	-		GFF5197	0.38	-1.3
5,194,917	+		GFF5197	0.38	-0.5
5,194,924	+		GFF5197	0.39	+1.7
5,194,924	+		GFF5197	0.39	-0.2
5,194,924	+		GFF5197	0.39	+1.2
5,194,925	-		GFF5197	0.39	+0.1
5,194,928	-		GFF5197	0.39	+0.1
5,194,932	-		GFF5197	0.39	-0.1
5,194,932	-		GFF5197	0.39	+0.3
5,194,932	-		GFF5197	0.39	+0.5
5,194,932	-		GFF5197	0.39	+0.1
5,194,976	+		GFF5197	0.42	+0.1
5,194,978	+		GFF5197	0.42	+0.5
5,194,988	+		GFF5197	0.42	+0.8
5,194,995	+		GFF5197	0.43	-0.3
5,195,003	-		GFF5197	0.43	+0.6
5,195,033	-		GFF5197	0.45	+0.8
5,195,034	+		GFF5197	0.45	+0.9
5,195,050	+		GFF5197	0.46	-0.2
5,195,058	-		GFF5197	0.46	-0.6
5,195,058	-		GFF5197	0.46	-2.2
5,195,100	-		GFF5197	0.49	+0.1
5,195,173	+		GFF5197	0.53	-0.1
5,195,176	-		GFF5197	0.53	+0.1
5,195,181	+		GFF5197	0.53	-0.5
5,195,212	-		GFF5197	0.55	-0.9
5,195,217	+		GFF5197	0.55	-0.8
5,195,218	+		GFF5197	0.55	-0.1
5,195,227	+		GFF5197	0.56	-0.6
5,195,230	-		GFF5197	0.56	-2.5
5,195,235	+		GFF5197	0.56	-0.8
5,195,238	-		GFF5197	0.56	+1.0
5,195,238	-		GFF5197	0.56	-0.4
5,195,238	-		GFF5197	0.56	+0.2
5,195,250	+		GFF5197	0.57	-1.2
5,195,270	-		GFF5197	0.58	+0.2
5,195,282	-		GFF5197	0.59	+0.9
5,195,297	+		GFF5197	0.60	+0.9
5,195,297	+		GFF5197	0.60	+0.8
5,195,297	+		GFF5197	0.60	+0.6
5,195,297	+		GFF5197	0.60	-0.3
5,195,297	+		GFF5197	0.60	+1.7
5,195,297	+		GFF5197	0.60	+0.2
5,195,305	-		GFF5197	0.60	-0.2
5,195,305	-		GFF5197	0.60	+0.0
5,195,305	-		GFF5197	0.60	+0.4
5,195,305	-		GFF5197	0.60	-1.6
5,195,305	-		GFF5197	0.60	+0.7
5,195,305	-		GFF5197	0.60	-0.5
5,195,308	+		GFF5197	0.60	-1.0
5,195,309	+		GFF5197	0.60	-0.7
5,195,325	-		GFF5197	0.61	-0.2
5,195,357	+		GFF5197	0.63	-1.3
5,195,372	+		GFF5197	0.64	+0.2
5,195,421	+		GFF5197	0.67	-1.0
5,195,425	+		GFF5197	0.67	+0.6
5,195,425	+		GFF5197	0.67	+0.5
5,195,429	-		GFF5197	0.67	+1.1
5,195,429	-		GFF5197	0.67	+0.4
5,195,432	+		GFF5197	0.67	-2.0
5,195,433	-		GFF5197	0.67	+0.4
5,195,433	-		GFF5197	0.67	-0.2
5,195,439	-		GFF5197	0.68	-1.5
5,195,439	-		GFF5197	0.68	-0.9
5,195,440	-		GFF5197	0.68	-1.3
5,195,440	-		GFF5197	0.68	-0.6
5,195,447	+		GFF5197	0.68	+0.8
5,195,447	+		GFF5197	0.68	+0.1
5,195,490	-		GFF5197	0.71	+0.7
5,195,495	+		GFF5197	0.71	+1.3
5,195,550	+		GFF5197	0.74	+1.3
5,195,559	+		GFF5197	0.75	+0.6
5,195,591	-		GFF5197	0.76	-1.9
5,195,591	-		GFF5197	0.76	+1.2
5,195,598	-		GFF5197	0.77	+0.4
5,195,598	-		GFF5197	0.77	-1.6
5,195,614	-		GFF5197	0.78	-0.3
5,195,620	-		GFF5197	0.78	-1.1
5,195,643	+		GFF5197	0.79	+1.3
5,195,663	+		GFF5197	0.80	-0.6
5,195,663	+		GFF5197	0.80	-1.8
5,195,663	+		GFF5197	0.80	-1.4
5,195,663	+		GFF5197	0.80	-0.5
5,195,671	+		GFF5197	0.81	-0.3
5,195,674	+		GFF5197	0.81	+0.7
5,195,700	+		GFF5197	0.82	-0.5
5,195,708	-		GFF5197	0.83	-0.9
5,195,709	+		GFF5197	0.83	+0.1
5,195,709	+		GFF5197	0.83	+0.6
5,195,710	-		GFF5197	0.83	+0.1
5,195,717	-		GFF5197	0.83	+0.4
5,195,717	-		GFF5197	0.83	+1.1
5,195,728	+		GFF5197	0.84	-0.1
5,195,795	-		GFF5197	0.88	+0.4
5,195,799	+		GFF5197	0.88	-1.8
5,195,807	-		GFF5197	0.89	+0.1
5,195,826	-		GFF5197	0.90	+0.3
5,195,837	+				+0.3
5,195,853	+				+0.3
5,195,872	+				-0.9
5,195,872	+				-0.7
5,195,872	+				-0.0
5,195,872	+				+0.1
5,195,872	+				+0.6
5,195,872	+				+0.1
5,195,875	-				+0.7
5,195,901	+				+0.2
5,195,901	+				-0.4
5,195,916	-				-0.2
5,195,927	+				-0.3
5,195,967	-				-0.5
5,195,974	+				-0.5
5,195,982	-				+0.1
5,196,004	-				-0.7
5,196,004	-				+0.2
5,196,027	-				+0.7
5,196,046	-				-0.8
5,196,295	-				+1.3
5,196,298	+				+0.3
5,196,298	+				-0.1
5,196,298	-				-0.6
5,196,311	-				-0.7
5,196,339	+				-0.5
5,196,365	-				-1.4
5,196,414	-				+0.7
5,196,441	-				-0.7
5,196,452	-				-1.6
5,196,463	+				-0.3
5,196,485	+				+1.1
5,196,485	+				+0.5
5,196,485	+				+0.8
5,196,485	+				-0.1
5,196,488	-				-0.6
5,196,488	-				+0.4
5,196,493	-		GFF5198	0.10	-0.1
5,196,493	-		GFF5198	0.10	+0.5
5,196,493	-		GFF5198	0.10	+0.8
5,196,493	-		GFF5198	0.10	+0.1
5,196,493	-		GFF5198	0.10	-2.0
5,196,493	-		GFF5198	0.10	-1.9
5,196,493	-		GFF5198	0.10	+1.3
5,196,499	-		GFF5198	0.11	+0.1
5,196,513	-		GFF5198	0.12	-0.1
5,196,520	+		GFF5198	0.12	-2.1
5,196,528	-		GFF5198	0.13	-0.1
5,196,528	-		GFF5198	0.13	-0.3
5,196,535	-		GFF5198	0.13	+0.9
5,196,546	+		GFF5198	0.14	-1.1
5,196,554	-		GFF5198	0.15	+0.0
5,196,566	+		GFF5198	0.15	-0.1
5,196,566	+		GFF5198	0.15	+1.4
5,196,566	+		GFF5198	0.15	-2.0
5,196,566	+		GFF5198	0.15	-0.6
5,196,568	+		GFF5198	0.16	-0.5
5,196,569	-		GFF5198	0.16	-0.4
5,196,574	-		GFF5198	0.16	-0.1
5,196,574	-		GFF5198	0.16	-0.2
5,196,576	-		GFF5198	0.16	+1.2
5,196,593	-		GFF5198	0.17	-2.0
5,196,598	+		GFF5198	0.18	-0.2
5,196,600	+		GFF5198	0.18	-0.3
5,196,606	-		GFF5198	0.18	+0.7
5,196,607	-		GFF5198	0.18	+0.9
5,196,608	+		GFF5198	0.19	+0.4
5,196,608	-		GFF5198	0.19	+0.8
5,196,638	-		GFF5198	0.21	-0.4
5,196,646	+		GFF5198	0.21	-1.2
5,196,649	-		GFF5198	0.22	-1.6
5,196,654	-		GFF5198	0.22	-1.4
5,196,656	-		GFF5198	0.22	+0.6
5,196,663	+		GFF5198	0.23	+0.2
5,196,668	+		GFF5198	0.23	+0.7
5,196,671	-		GFF5198	0.23	-1.5
5,196,671	-		GFF5198	0.23	-0.3
5,196,690	-		GFF5198	0.25	-0.3
5,196,690	-		GFF5198	0.25	-0.6
5,196,695	-		GFF5198	0.25	+0.2
5,196,697	+		GFF5198	0.25	+0.7
5,196,707	+		GFF5198	0.26	-0.1
5,196,726	+		GFF5198	0.27	-0.2
5,196,749	-		GFF5198	0.29	-0.3
5,196,749	-		GFF5198	0.29	+0.4
5,196,751	-		GFF5198	0.29	+0.1
5,196,762	+		GFF5198	0.30	+0.0
5,196,770	-		GFF5198	0.30	-0.1
5,196,785	+		GFF5198	0.32	-0.5
5,196,817	-		GFF5198	0.34	+0.7
5,196,825	-		GFF5198	0.35	+1.6
5,196,836	+		GFF5198	0.35	+1.1
5,196,837	+		GFF5198	0.35	-2.1
5,196,838	+		GFF5198	0.35	-0.9
5,196,844	-		GFF5198	0.36	-1.5
5,196,844	-		GFF5198	0.36	-1.9
5,196,845	-		GFF5198	0.36	-0.8
5,196,849	-		GFF5198	0.36	+0.7
5,196,851	-		GFF5198	0.36	-0.4
5,196,856	+		GFF5198	0.37	-0.5
5,196,858	-		GFF5198	0.37	-0.9
5,196,889	+		GFF5198	0.39	-0.5
5,196,908	-		GFF5198	0.41	-0.7
5,196,934	+		GFF5198	0.43	-1.3
5,196,939	+		GFF5198	0.43	+1.0
5,196,939	+		GFF5198	0.43	-0.1
5,196,939	+		GFF5198	0.43	-2.0
5,196,939	+		GFF5198	0.43	+0.1
5,196,939	+		GFF5198	0.43	-0.6
5,196,939	+		GFF5198	0.43	-0.6
5,196,939	+		GFF5198	0.43	+1.3
5,196,939	+		GFF5198	0.43	+0.5
5,196,939	+		GFF5198	0.43	+0.8
5,196,939	+		GFF5198	0.43	-0.7
5,196,939	+		GFF5198	0.43	-0.4
5,196,941	-		GFF5198	0.43	+1.9
5,196,947	-		GFF5198	0.43	+0.7
5,196,947	-		GFF5198	0.43	+0.9
5,196,947	-		GFF5198	0.43	-1.4
5,196,947	-		GFF5198	0.43	+0.8
5,196,947	-		GFF5198	0.43	+1.1
5,196,947	-		GFF5198	0.43	+0.5
5,196,947	-		GFF5198	0.43	-1.7
5,196,947	-		GFF5198	0.43	+1.6
5,196,947	-		GFF5198	0.43	+1.0
5,196,947	-		GFF5198	0.43	+0.6
5,196,947	-		GFF5198	0.43	+0.6
5,196,947	-		GFF5198	0.43	-1.9
5,196,947	-		GFF5198	0.43	-1.9
5,196,961	+		GFF5198	0.45	+0.1
5,196,967	+		GFF5198	0.45	-1.1
5,196,975	-		GFF5198	0.46	-0.7
5,196,975	-		GFF5198	0.46	+1.2
5,197,001	+		GFF5198	0.47	+0.1
5,197,005	+		GFF5198	0.48	+0.3
5,197,007	-		GFF5198	0.48	+1.4
5,197,009	-		GFF5198	0.48	-0.3