Strain Fitness in Sphingobium sp. HT1-2 around GFF5039

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
5,036,921	+		GFF5038	0.73	+1.7
5,036,924	-		GFF5038	0.74	-0.1
5,036,926	+		GFF5038	0.74	-1.0
5,036,929	-		GFF5038	0.74	+0.5
5,036,931	+		GFF5038	0.74	+0.6
5,036,931	+		GFF5038	0.74	+1.0
5,036,932	+		GFF5038	0.74	+1.7
5,036,934	-		GFF5038	0.74	+0.2
5,036,936	+		GFF5038	0.74	+0.5
5,036,936	+		GFF5038	0.74	-0.8
5,036,939	-		GFF5038	0.74	-0.8
5,036,944	-		GFF5038	0.74	+1.1
5,036,944	-		GFF5038	0.74	-2.1
5,037,063	+		GFF5038	0.78	-0.2
5,037,071	+		GFF5038	0.79	+0.7
5,037,071	+		GFF5038	0.79	-0.7
5,037,086	+		GFF5038	0.79	-0.6
5,037,086	+		GFF5038	0.79	+0.6
5,037,086	+		GFF5038	0.79	-0.8
5,037,086	+		GFF5038	0.79	+0.1
5,037,086	+		GFF5038	0.79	-0.3
5,037,086	+		GFF5038	0.79	-0.1
5,037,086	+		GFF5038	0.79	-0.2
5,037,086	+		GFF5038	0.79	+0.6
5,037,094	-		GFF5038	0.80	-1.7
5,037,094	-		GFF5038	0.80	+0.0
5,037,094	-		GFF5038	0.80	+0.5
5,037,131	+		GFF5038	0.81	+0.7
5,037,143	+		GFF5038	0.81	+0.6
5,037,143	+		GFF5038	0.81	+0.2
5,037,143	+		GFF5038	0.81	-0.1
5,037,151	-		GFF5038	0.82	+0.2
5,037,184	-		GFF5038	0.83	-0.5
5,037,202	+		GFF5038	0.83	+0.5
5,037,203	+		GFF5038	0.83	-0.0
5,037,203	+		GFF5038	0.83	+0.1
5,037,210	-		GFF5038	0.84	+0.1
5,037,211	-		GFF5038	0.84	+0.3
5,037,211	-		GFF5038	0.84	-0.8
5,037,211	-		GFF5038	0.84	+2.1
5,037,243	+		GFF5038	0.85	+1.2
5,037,256	+		GFF5038	0.85	-1.2
5,037,260	+		GFF5038	0.85	+0.6
5,037,278	-		GFF5038	0.86	+1.0
5,037,298	-		GFF5038	0.87	+0.1
5,037,304	+		GFF5038	0.87	+0.1
5,037,304	+		GFF5038	0.87	-2.8
5,037,304	+		GFF5038	0.87	-0.7
5,037,309	-		GFF5038	0.87	+1.1
5,037,312	-		GFF5038	0.87	-2.4
5,037,322	+		GFF5038	0.88	-0.4
5,037,357	-		GFF5038	0.89	+0.2
5,037,366	+		GFF5038	0.89	+0.2
5,037,380	+		GFF5038	0.90	-0.2
5,037,388	-		GFF5038	0.90	-0.4
5,037,394	-				-0.5
5,037,398	-				+1.1
5,037,400	+				-0.5
5,037,400	+				+0.4
5,037,406	+				+0.6
5,037,457	+				-1.2
5,037,510	+				+0.2
5,037,510	+				+0.9
5,037,510	+				+0.4
5,037,518	-				+1.6
5,037,518	-				+0.8
5,037,518	-				+0.4
5,037,518	-				+0.5
5,037,518	-				-0.4
5,037,538	+				+0.1
5,037,552	+				-0.4
5,037,557	+				+0.8
5,037,557	+				+1.3
5,037,691	+				+0.6
5,037,691	-				+0.2
5,037,699	-				+0.1
5,037,794	+				+0.8
5,037,802	-				-0.9
5,037,888	+				-1.5
5,037,896	-				-0.4
5,037,969	+				-0.2
5,037,969	+				+1.0
5,037,977	-				+1.0
5,037,995	+		GFF5039	0.11	+0.6
5,038,002	+		GFF5039	0.12	+1.1
5,038,015	-		GFF5039	0.14	+0.9
5,038,050	-		GFF5039	0.19	+0.6
5,038,072	-		GFF5039	0.22	-2.2
5,038,111	+		GFF5039	0.28	-0.7
5,038,116	+		GFF5039	0.28	+0.7
5,038,126	-		GFF5039	0.30	-0.3
5,038,145	+		GFF5039	0.33	-1.4
5,038,145	+		GFF5039	0.33	-1.4
5,038,145	+		GFF5039	0.33	+0.9
5,038,153	-		GFF5039	0.34	+0.9
5,038,153	-		GFF5039	0.34	-0.8
5,038,153	-		GFF5039	0.34	-0.8
5,038,153	-		GFF5039	0.34	+1.8
5,038,153	-		GFF5039	0.34	-0.3
5,038,153	-		GFF5039	0.34	+0.8
5,038,162	-		GFF5039	0.35	-0.9
5,038,162	-		GFF5039	0.35	-0.1
5,038,171	-		GFF5039	0.36	-1.7
5,038,185	+		GFF5039	0.38	-0.9
5,038,185	+		GFF5039	0.38	+0.4
5,038,201	+		GFF5039	0.41	-0.7
5,038,209	-		GFF5039	0.42	+1.7
5,038,219	-		GFF5039	0.43	+0.1
5,038,226	+		GFF5039	0.44	+1.6
5,038,238	-		GFF5039	0.46	-0.4
5,038,239	+		GFF5039	0.46	+0.1
5,038,253	+		GFF5039	0.48	+0.5
5,038,254	-		GFF5039	0.48	+0.6
5,038,265	-		GFF5039	0.50	-1.8
5,038,270	-		GFF5039	0.51	-2.0
5,038,302	+		GFF5039	0.55	+0.2
5,038,306	+		GFF5039	0.56	-0.9
5,038,381	-		GFF5039	0.67	+0.1
5,038,400	+		GFF5039	0.70	-1.2
5,038,408	-		GFF5039	0.71	+0.2
5,038,408	-		GFF5039	0.71	-1.6
5,038,408	-		GFF5039	0.71	-0.5
5,038,468	+		GFF5039	0.80	+1.1
5,038,499	+		GFF5039	0.84	+0.6
5,038,507	-		GFF5039	0.85	-1.6
5,038,507	-		GFF5039	0.85	-1.3
5,038,507	-		GFF5039	0.85	-0.0
5,038,526	+		GFF5039	0.88	+0.4
5,038,533	+		GFF5039	0.89	-1.5
5,038,546	+				+0.9
5,038,546	+				+0.8
5,038,554	-				-0.4
5,038,554	-				+1.2
5,038,559	-				+0.4
5,038,585	+				+1.0
5,038,585	+				+1.1
5,038,589	+				+0.4
5,038,589	+				+0.2
5,038,589	+				-0.4
5,038,589	+				+0.2
5,038,589	+				+0.5
5,038,597	-				+2.0
5,038,597	-				-1.2
5,038,597	-				-0.5
5,038,628	+				+0.2
5,038,636	-				-1.2
5,038,638	+				+1.4
5,038,638	+				-0.4
5,038,638	+				+0.3
5,038,646	-				-0.0
5,038,646	-				+0.7
5,038,646	-				+0.8
5,038,646	-				-1.2
5,038,646	-				-0.1
5,038,646	-				+0.4
5,038,651	-				+1.2
5,038,682	+				+0.8
5,038,690	-				+1.3
5,038,691	-				-0.9
5,038,705	+				+1.0
5,038,711	-				+0.5
5,038,730	-		GFF5040	0.11	-0.8
5,038,875	+		GFF5040	0.45	-0.6
5,038,875	+		GFF5040	0.45	+0.6
5,038,875	+		GFF5040	0.45	-0.7
5,038,875	+		GFF5040	0.45	-0.7
5,038,883	-		GFF5040	0.46	-0.9
5,038,888	-		GFF5040	0.48	+0.4
5,038,888	-		GFF5040	0.48	-0.5
5,038,913	-		GFF5040	0.54	+0.7
5,038,951	+		GFF5040	0.62	-0.5
5,038,987	+		GFF5040	0.71	+0.1
5,039,280	+				-1.2
5,039,355	-				-1.8
5,039,392	-		GFF5041	0.11	-0.1
5,039,392	-		GFF5041	0.11	-0.8
5,039,394	+		GFF5041	0.11	+1.2
5,039,426	-		GFF5041	0.14	-1.1
5,039,458	-		GFF5041	0.17	-0.2
5,039,482	-		GFF5041	0.20	-1.2
5,039,484	+		GFF5041	0.20	-0.0
5,039,484	+		GFF5041	0.20	-0.7
5,039,484	+		GFF5041	0.20	-0.7
5,039,492	-		GFF5041	0.21	+0.1
5,039,492	-		GFF5041	0.21	+0.1
5,039,492	-		GFF5041	0.21	-0.4
5,039,492	-		GFF5041	0.21	-0.0
5,039,493	-		GFF5041	0.21	-1.5
5,039,493	-		GFF5041	0.21	+0.5
5,039,499	-		GFF5041	0.22	+0.8
5,039,557	+		GFF5041	0.28	-0.5
5,039,557	+		GFF5041	0.28	-0.5
5,039,563	+		GFF5041	0.28	-1.3
5,039,587	+		GFF5041	0.31	-0.2
5,039,589	-		GFF5041	0.31	-0.6
5,039,592	+		GFF5041	0.32	-0.4
5,039,595	-		GFF5041	0.32	+0.2
5,039,595	-		GFF5041	0.32	-0.3
5,039,595	-		GFF5041	0.32	-0.4
5,039,595	-		GFF5041	0.32	+2.1
5,039,600	-		GFF5041	0.32	-0.6
5,039,600	-		GFF5041	0.32	-0.2
5,039,600	-		GFF5041	0.32	-1.6