Strain Fitness in Sphingobium sp. HT1-2 around GFF4985

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,985,544	+				+1.2
4,985,544	+				+0.4
4,985,552	-				-0.4
4,985,552	-				-1.9
4,985,552	-				-0.2
4,985,600	+				+0.7
4,985,605	+				-0.1
4,985,608	-				+0.1
4,985,634	+		GFF4984	0.11	-0.7
4,985,634	+		GFF4984	0.11	+1.2
4,985,642	-		GFF4984	0.12	+0.6
4,985,657	+		GFF4984	0.15	-0.7
4,985,676	+		GFF4984	0.18	+0.2
4,985,676	+		GFF4984	0.18	+0.1
4,985,676	+		GFF4984	0.18	-0.5
4,985,676	+		GFF4984	0.18	-1.4
4,985,676	+		GFF4984	0.18	-1.1
4,985,683	+		GFF4984	0.19	+0.3
4,985,684	-		GFF4984	0.20	+2.1
4,985,684	-		GFF4984	0.20	-2.1
4,985,730	+		GFF4984	0.28	+0.6
4,985,730	+		GFF4984	0.28	-1.5
4,985,738	-		GFF4984	0.29	-1.4
4,985,738	-		GFF4984	0.29	-0.5
4,985,738	-		GFF4984	0.29	+1.4
4,985,789	+		GFF4984	0.38	+0.1
4,985,795	-		GFF4984	0.39	+0.6
4,985,801	-		GFF4984	0.40	+0.3
4,985,830	+		GFF4984	0.45	-0.4
4,985,837	+		GFF4984	0.47	+1.1
4,985,838	-		GFF4984	0.47	+0.7
4,985,846	+		GFF4984	0.48	-0.7
4,985,868	+		GFF4984	0.52	-2.3
4,985,868	+		GFF4984	0.52	+1.0
4,985,868	+		GFF4984	0.52	+1.5
4,985,876	-		GFF4984	0.53	+1.1
4,985,876	-		GFF4984	0.53	+1.1
4,985,878	+		GFF4984	0.54	+1.0
4,985,929	+		GFF4984	0.63	-0.4
4,985,931	+		GFF4984	0.63	-0.8
4,985,954	+		GFF4984	0.67	-0.2
4,985,975	-		GFF4984	0.71	-1.3
4,986,047	+		GFF4984	0.84	-1.0
4,986,056	-		GFF4984	0.85	+1.3
4,986,112	+				+0.2
4,986,120	-				+0.6
4,986,163	-				+0.2
4,986,164	+				+0.6
4,986,172	-				-0.8
4,986,176	+				-1.4
4,986,226	-				+0.7
4,986,269	+				+0.6
4,986,293	-				+0.2
4,986,310	+				+0.9
4,986,320	+				-1.4
4,986,329	+				+0.2
4,986,337	-				+0.3
4,986,337	-				+0.2
4,986,337	-				-0.1
4,986,363	+				+0.6
4,986,363	+				+0.2
4,986,371	-				+0.5
4,986,400	+				+1.9
4,986,468	+				-0.4
4,986,469	-				+1.1
4,986,470	+				+0.4
4,986,476	-				+1.4
4,986,486	-				+0.1
4,986,497	+				-1.5
4,986,510	+				-1.4
4,986,518	-				-0.2
4,986,534	+				-0.2
4,986,581	+		GFF4985	0.11	+0.7
4,986,582	-		GFF4985	0.11	+0.7
4,986,624	+		GFF4985	0.17	+0.1
4,986,680	-		GFF4985	0.26	-2.2
4,986,682	-		GFF4985	0.26	-1.4
4,986,688	+		GFF4985	0.27	+1.1
4,986,688	+		GFF4985	0.27	+0.0
4,986,692	-		GFF4985	0.28	+0.3
4,986,696	-		GFF4985	0.29	+0.8
4,986,723	+		GFF4985	0.33	+1.0
4,986,734	+		GFF4985	0.34	+0.2
4,986,758	+		GFF4985	0.38	-0.0
4,986,764	+		GFF4985	0.39	-0.0
4,986,769	+		GFF4985	0.40	-0.2
4,986,773	-		GFF4985	0.40	-0.5
4,986,776	+		GFF4985	0.41	+0.2
4,986,794	-		GFF4985	0.44	+1.9
4,986,813	+		GFF4985	0.47	+0.5
4,986,813	+		GFF4985	0.47	-0.4
4,986,813	+		GFF4985	0.47	+1.1
4,986,813	+		GFF4985	0.47	-1.3
4,986,821	-		GFF4985	0.48	+0.4
4,986,826	-		GFF4985	0.49	+1.2
4,986,840	+		GFF4985	0.51	+1.7
4,986,856	-		GFF4985	0.53	-0.2
4,986,881	-		GFF4985	0.57	-1.2
4,986,892	+		GFF4985	0.59	+0.9
4,986,900	-		GFF4985	0.60	-0.5
4,986,900	-		GFF4985	0.60	-0.4
4,986,930	-		GFF4985	0.65	+0.5
4,986,930	-		GFF4985	0.65	+0.5
4,986,932	+		GFF4985	0.65	-1.5
4,986,932	+		GFF4985	0.65	+0.4
4,986,990	+		GFF4985	0.74	-0.6
4,986,990	-		GFF4985	0.74	-0.1
4,986,992	-		GFF4985	0.75	-0.2
4,986,995	-		GFF4985	0.75	-1.4
4,986,999	-		GFF4985	0.76	-0.3
4,987,000	-		GFF4985	0.76	-0.6
4,987,008	-		GFF4985	0.77	+0.6
4,987,008	-		GFF4985	0.77	-0.2
4,987,008	-		GFF4985	0.77	-1.5
4,987,010	+		GFF4985	0.77	+0.5
4,987,010	+		GFF4985	0.77	+0.6
4,987,010	+		GFF4985	0.77	-0.0
4,987,010	+		GFF4985	0.77	+1.5
4,987,010	+		GFF4985	0.77	-0.7
4,987,010	-		GFF4985	0.77	+0.8
4,987,013	-		GFF4985	0.78	+0.5
4,987,018	-		GFF4985	0.79	+1.1
4,987,018	-		GFF4985	0.79	-0.4
4,987,018	-		GFF4985	0.79	+1.0
4,987,030	+		GFF4985	0.81	-0.7
4,987,034	-		GFF4985	0.81	-0.1
4,987,056	+		GFF4985	0.85	-0.3
4,987,068	-		GFF4985	0.86	-0.1
4,987,074	-		GFF4985	0.87	+0.4
4,987,081	+		GFF4985	0.88	+0.3
4,987,096	+				+0.2
4,987,096	+				+0.1
4,987,104	-				-0.0
4,987,105	+				+0.9
4,987,106	+				+0.2
4,987,106	-				-0.5
4,987,106	-				+0.8
4,987,106	-				+1.2
4,987,106	-				-1.6
4,987,106	-				-0.2
4,987,115	+				-0.3
4,987,118	-				+0.8
4,987,123	-				-0.2
4,987,123	-				+0.3
4,987,123	-				+0.4
4,987,134	+				+0.3
4,987,142	-				-0.3
4,987,147	-				-0.3
4,987,147	-				-1.8
4,987,167	+				+0.5
4,987,175	-				-1.2
4,987,175	-				-0.9
4,987,185	-				+0.1
4,987,187	+				+2.1
4,987,187	+				+0.5
4,987,187	+				-1.0
4,987,187	+				+1.2
4,987,187	+				-1.0
4,987,187	+				+0.9
4,987,187	+				-0.0
4,987,187	+				-0.6
4,987,195	-				-1.9
4,987,195	-				-0.0
4,987,195	-				+0.9
4,987,195	-				+0.3
4,987,195	-				+0.1
4,987,195	-				-0.7
4,987,195	-				+1.5
4,987,200	+				-0.7
4,987,208	-				+0.8
4,987,208	-				-0.2
4,987,208	-				+1.3
4,987,216	+		GFF4986	0.14	+1.0
4,987,219	-		GFF4986	0.15	-0.5
4,987,221	+		GFF4986	0.16	-1.1
4,987,241	-		GFF4986	0.26	-0.5
4,987,247	+		GFF4986	0.29	+0.5
4,987,247	+		GFF4986	0.29	-1.0
4,987,247	+		GFF4986	0.29	+1.0
4,987,247	+		GFF4986	0.29	-1.5
4,987,247	+		GFF4986	0.29	+0.4
4,987,255	-		GFF4986	0.33	+0.2
4,987,255	-		GFF4986	0.33	+1.5
4,987,257	+		GFF4986	0.34	-0.1
4,987,265	-		GFF4986	0.38	-0.2
4,987,281	+		GFF4986	0.46	-0.7
4,987,415	-				+0.3
4,987,426	-				+0.2
4,987,461	+		GFF4987	0.17	+1.0
4,987,469	-		GFF4987	0.19	+0.5
4,987,469	-		GFF4987	0.19	-0.5
4,987,474	-		GFF4987	0.20	-0.2
4,987,479	+		GFF4987	0.21	-0.6
4,987,481	+		GFF4987	0.21	+0.2
4,987,484	+		GFF4987	0.22	+0.1
4,987,487	-		GFF4987	0.23	+2.0
4,987,490	+		GFF4987	0.23	-0.8
4,987,522	-		GFF4987	0.31	+0.2
4,987,551	+		GFF4987	0.37	-1.1
4,987,551	+		GFF4987	0.37	+1.9
4,987,551	+		GFF4987	0.37	-1.8
4,987,554	-		GFF4987	0.38	-0.7
4,987,559	-		GFF4987	0.39	-1.4
4,987,574	-		GFF4987	0.42	+0.8
4,987,574	-		GFF4987	0.42	+0.9
4,987,604	+		GFF4987	0.49	-1.3
4,987,604	+		GFF4987	0.49	+1.1
4,987,612	-		GFF4987	0.51	+0.9
4,987,612	-		GFF4987	0.51	+0.6
4,987,612	-		GFF4987	0.51	-0.2
4,987,662	+		GFF4987	0.62	+0.8
4,987,681	+		GFF4987	0.66	+0.6
4,987,681	+		GFF4987	0.66	-0.0
4,987,681	+		GFF4987	0.66	-0.5
4,987,681	+		GFF4987	0.66	+1.7
4,987,686	+		GFF4987	0.68	-0.5
4,987,689	-		GFF4987	0.68	-1.2
4,987,689	-		GFF4987	0.68	-0.5
4,987,728	+		GFF4987	0.77	+0.0
4,987,831	+				-0.2
4,987,831	+				-0.1
4,987,832	-				-0.4
4,987,838	-				-1.8
4,987,839	-				+1.0
4,987,839	-				-1.6
4,987,855	-				-1.0
4,987,855	-				-0.9
4,987,855	-				-0.7
4,987,871	+				-2.1
4,987,879	-				+0.4
4,987,896	-				-0.1
4,987,927	+				+0.2
4,987,945	-				-0.1
4,987,947	-				+1.1
4,987,978	+		GFF4988	0.11	+1.6
4,987,997	-		GFF4988	0.13	+0.2
4,987,997	-		GFF4988	0.13	-1.9
4,987,997	-		GFF4988	0.13	-0.3
4,988,016	-		GFF4988	0.16	+0.1
4,988,027	+		GFF4988	0.17	+0.2
4,988,036	-		GFF4988	0.18	-0.6
4,988,050	-		GFF4988	0.20	-1.6
4,988,063	-		GFF4988	0.21	-0.1
4,988,079	+		GFF4988	0.23	-0.7
4,988,079	+		GFF4988	0.23	+0.4
4,988,085	-		GFF4988	0.24	-0.6
4,988,087	-		GFF4988	0.24	+0.1
4,988,095	-		GFF4988	0.25	+0.2
4,988,104	+		GFF4988	0.27	-0.2
4,988,104	+		GFF4988	0.27	-1.4
4,988,112	-		GFF4988	0.28	-2.6
4,988,128	+		GFF4988	0.30	-0.0
4,988,131	-		GFF4988	0.30	-1.6
4,988,138	+		GFF4988	0.31	+1.0
4,988,138	+		GFF4988	0.31	+1.1
4,988,143	+		GFF4988	0.31	-0.6
4,988,143	+		GFF4988	0.31	+0.1
4,988,146	-		GFF4988	0.32	-1.8