Strain Fitness in Sphingobium sp. HT1-2 around GFF4833

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,816,295	+				-1.6
4,816,303	+				+0.2
4,816,311	-				-1.6
4,816,311	-				+0.3
4,816,318	+				-0.2
4,816,328	-				-0.5
4,816,354	+				-0.1
4,816,375	+				+0.2
4,816,381	-				-1.8
4,816,383	-				-0.6
4,816,383	-				-0.1
4,816,412	-				-1.1
4,816,414	+				+1.1
4,816,414	+				+0.4
4,816,422	-		GFF4831	0.12	-1.6
4,816,422	-		GFF4831	0.12	-1.1
4,816,431	-		GFF4831	0.14	+2.0
4,816,435	+		GFF4831	0.15	-1.5
4,816,441	-		GFF4831	0.17	+0.7
4,816,452	+		GFF4831	0.20	-0.6
4,816,454	+		GFF4831	0.21	-0.0
4,816,454	+		GFF4831	0.21	+0.1
4,816,462	-		GFF4831	0.23	+0.8
4,816,462	-		GFF4831	0.23	+0.9
4,816,462	-		GFF4831	0.23	+1.7
4,816,493	+		GFF4831	0.31	+0.1
4,816,493	+		GFF4831	0.31	-2.0
4,816,501	-		GFF4831	0.33	-1.2
4,816,502	+		GFF4831	0.33	-0.4
4,816,517	+		GFF4831	0.37	+0.6
4,816,525	-		GFF4831	0.39	+0.5
4,816,538	+		GFF4831	0.43	+1.1
4,816,540	-		GFF4831	0.43	+0.9
4,816,543	+		GFF4831	0.44	-0.1
4,816,543	+		GFF4831	0.44	+0.7
4,816,544	-		GFF4831	0.45	-1.6
4,816,546	-		GFF4831	0.45	-0.8
4,816,546	-		GFF4831	0.45	-0.5
4,816,546	-		GFF4831	0.45	-0.3
4,816,546	-		GFF4831	0.45	-2.3
4,816,551	-		GFF4831	0.46	-1.7
4,816,556	+		GFF4831	0.48	-0.1
4,816,575	+		GFF4831	0.53	+0.2
4,816,583	-		GFF4831	0.55	+0.6
4,816,587	+		GFF4831	0.56	-0.3
4,816,590	-		GFF4831	0.57	+0.7
4,816,590	-		GFF4831	0.57	-1.6
4,816,590	-		GFF4831	0.57	-0.6
4,816,590	-		GFF4831	0.57	-0.5
4,816,647	-		GFF4831	0.72	-1.5
4,816,659	+		GFF4831	0.75	-0.9
4,816,659	+		GFF4831	0.75	-0.9
4,816,664	+		GFF4831	0.77	+0.1
4,816,667	-		GFF4831	0.77	+0.5
4,816,672	-		GFF4831	0.79	-0.1
4,816,672	-		GFF4831	0.79	-1.1
4,816,677	-		GFF4831	0.80	+1.1
4,816,677	-		GFF4831	0.80	+0.6
4,816,677	-		GFF4831	0.80	-0.0
4,816,730	-				-0.0
4,816,808	-				-1.1
4,816,825	+				+1.2
4,816,825	+				+1.1
4,816,849	+				-1.0
4,816,864	-				+1.5
4,816,866	+				-0.7
4,816,872	+				+0.7
4,816,874	-				+0.7
4,816,877	+				+0.1
4,816,880	-				-0.0
4,816,880	-				+0.3
4,816,884	+				+0.1
4,816,884	+				-1.6
4,816,888	+				+0.3
4,816,890	-				-0.7
4,816,890	-				+0.1
4,816,890	-				-2.1
4,816,890	-				-0.6
4,816,890	-				+0.1
4,816,892	+				-1.0
4,816,892	+				-0.1
4,816,892	+				+0.9
4,816,900	-				-0.7
4,816,900	-				-0.9
4,816,909	+				+1.0
4,816,943	-				+1.2
4,816,955	+				-0.7
4,816,965	+				+0.8
4,816,967	+				+0.1
4,816,970	+				+0.6
4,816,970	+				+0.6
4,816,970	+				+0.4
4,816,972	+				-0.6
4,816,973	-				+0.7
4,816,973	-				-0.0
4,816,973	-				-1.1
4,816,973	-				-0.5
4,816,978	-				-1.3
4,816,978	-				+0.3
4,816,982	+				+0.8
4,816,982	+				+1.4
4,816,982	+				-0.5
4,816,982	+				-0.5
4,816,982	+				+0.6
4,816,990	-				+0.6
4,816,990	-				+0.0
4,816,990	-				-2.1
4,816,990	-				+0.8
4,816,993	+				-0.3
4,817,007	-				-0.0
4,817,007	-				-0.5
4,817,019	-				+0.7
4,817,020	+				+1.0
4,817,056	+				-0.2
4,817,060	+				-0.1
4,817,061	+				+0.3
4,817,064	-				+1.2
4,817,069	+				-0.1
4,817,084	-				-0.5
4,817,108	+				-1.5
4,817,108	+				-0.9
4,817,108	+				-0.3
4,817,113	+				-0.5
4,817,113	+				+1.1
4,817,116	-				+0.5
4,817,121	-				-0.3
4,817,126	-				-1.7
4,817,126	-				-0.3
4,817,132	+				-1.5
4,817,135	+				-0.9
4,817,141	+				-1.8
4,817,148	-				-0.1
4,817,188	+		GFF4832	0.32	+0.7
4,817,192	+		GFF4832	0.35	+0.4
4,817,193	-		GFF4832	0.36	-1.2
4,817,196	-		GFF4832	0.38	-0.7
4,817,197	+		GFF4832	0.39	+0.5
4,817,197	+		GFF4832	0.39	+1.7
4,817,197	+		GFF4832	0.39	-0.8
4,817,197	+		GFF4832	0.39	-0.3
4,817,197	+		GFF4832	0.39	+0.8
4,817,200	-		GFF4832	0.41	+0.1
4,817,205	-		GFF4832	0.45	-0.5
4,817,205	-		GFF4832	0.45	-1.2
4,817,205	-		GFF4832	0.45	+1.1
4,817,205	-		GFF4832	0.45	-0.3
4,817,205	-		GFF4832	0.45	-1.5
4,817,207	+		GFF4832	0.46	-0.0
4,817,210	-		GFF4832	0.48	-2.1
4,817,212	+		GFF4832	0.50	+0.3
4,817,217	-		GFF4832	0.54	+1.8
4,817,243	+		GFF4832	0.73	+1.6
4,817,271	+				+0.2
4,817,301	+				+1.7
4,817,306	+				-0.7
4,817,364	+		GFF4833	0.10	+0.6
4,817,419	+		GFF4833	0.17	+1.5
4,817,421	+		GFF4833	0.17	+0.4
4,817,426	-		GFF4833	0.18	-0.3
4,817,429	-		GFF4833	0.18	+0.7
4,817,443	+		GFF4833	0.20	-0.7
4,817,443	+		GFF4833	0.20	-2.4
4,817,443	+		GFF4833	0.20	-1.5
4,817,443	+		GFF4833	0.20	+0.2
4,817,450	-		GFF4833	0.20	-0.8
4,817,462	+		GFF4833	0.22	+1.2
4,817,462	+		GFF4833	0.22	-0.8
4,817,462	+		GFF4833	0.22	+0.9
4,817,462	+		GFF4833	0.22	+0.2
4,817,462	+		GFF4833	0.22	+0.6
4,817,462	+		GFF4833	0.22	+0.2
4,817,462	+		GFF4833	0.22	+0.0
4,817,470	-		GFF4833	0.23	-0.6
4,817,470	-		GFF4833	0.23	-0.2
4,817,477	-		GFF4833	0.24	+1.0
4,817,478	+		GFF4833	0.24	-0.6
4,817,481	-		GFF4833	0.24	+0.7
4,817,501	+		GFF4833	0.27	-1.4
4,817,512	+		GFF4833	0.28	+1.4
4,817,518	-		GFF4833	0.29	-0.2
4,817,518	-		GFF4833	0.29	+0.5
4,817,531	-		GFF4833	0.30	-0.6
4,817,536	+		GFF4833	0.31	-1.9
4,817,536	+		GFF4833	0.31	-0.8
4,817,536	+		GFF4833	0.31	+0.3
4,817,536	+		GFF4833	0.31	-0.3
4,817,536	+		GFF4833	0.31	-0.2
4,817,538	+		GFF4833	0.31	-0.1
4,817,544	-		GFF4833	0.32	-0.9
4,817,550	+		GFF4833	0.32	-1.0
4,817,558	-		GFF4833	0.33	+1.0
4,817,565	-		GFF4833	0.34	+0.0
4,817,575	-		GFF4833	0.35	+0.1
4,817,575	-		GFF4833	0.35	+0.8
4,817,585	+		GFF4833	0.37	-0.5
4,817,586	+		GFF4833	0.37	+0.1
4,817,586	+		GFF4833	0.37	-0.2
4,817,586	+		GFF4833	0.37	-0.5
4,817,591	+		GFF4833	0.37	+0.8
4,817,593	-		GFF4833	0.38	-0.2
4,817,599	-		GFF4833	0.38	-1.6
4,817,600	-		GFF4833	0.39	-0.6
4,817,606	-		GFF4833	0.39	+1.1
4,817,622	+		GFF4833	0.41	-1.2
4,817,622	+		GFF4833	0.41	-2.0
4,817,680	+		GFF4833	0.48	+1.2
4,817,680	+		GFF4833	0.48	-1.1
4,817,688	-		GFF4833	0.49	-0.9
4,817,688	-		GFF4833	0.49	-1.3
4,817,698	+		GFF4833	0.50	-0.1
4,817,706	-		GFF4833	0.51	-0.4
4,817,741	+		GFF4833	0.55	+1.6
4,817,748	-		GFF4833	0.56	+0.2
4,817,762	+		GFF4833	0.58	-0.2
4,817,762	+		GFF4833	0.58	+0.5
4,817,762	+		GFF4833	0.58	-1.0
4,817,762	+		GFF4833	0.58	-0.9
4,817,768	+		GFF4833	0.59	+0.4
4,817,770	-		GFF4833	0.59	-0.3
4,817,770	-		GFF4833	0.59	-1.2
4,817,770	-		GFF4833	0.59	+0.1
4,817,776	-		GFF4833	0.60	+0.3
4,817,786	+		GFF4833	0.61	-1.2
4,817,786	+		GFF4833	0.61	+0.1
4,817,786	+		GFF4833	0.61	+0.9
4,817,786	+		GFF4833	0.61	+0.4
4,817,786	+		GFF4833	0.61	-1.6
4,817,786	+		GFF4833	0.61	-0.1
4,817,786	+		GFF4833	0.61	+1.6
4,817,786	+		GFF4833	0.61	-1.5
4,817,794	-		GFF4833	0.62	-0.9
4,817,794	-		GFF4833	0.62	+0.2
4,817,794	-		GFF4833	0.62	-0.0
4,817,799	-		GFF4833	0.62	+0.1
4,817,806	+		GFF4833	0.63	+0.8
4,817,806	+		GFF4833	0.63	-1.8
4,817,806	+		GFF4833	0.63	-1.6
4,817,809	-		GFF4833	0.64	-0.4
4,817,814	-		GFF4833	0.64	+0.3
4,817,816	+		GFF4833	0.65	+0.3
4,817,816	+		GFF4833	0.65	-0.6
4,817,822	+		GFF4833	0.65	-0.9
4,817,840	-		GFF4833	0.67	+0.9
4,817,869	+		GFF4833	0.71	-0.7
4,817,887	+		GFF4833	0.73	+0.4
4,817,895	-		GFF4833	0.74	-0.6
4,817,897	-		GFF4833	0.74	+1.1
4,817,900	+		GFF4833	0.75	-0.7
4,817,915	-		GFF4833	0.76	+0.3
4,817,918	-		GFF4833	0.77	+0.3
4,817,918	-		GFF4833	0.77	-1.9
4,817,918	-		GFF4833	0.77	-0.2
4,817,918	-		GFF4833	0.77	+0.3
4,817,918	-		GFF4833	0.77	-1.9
4,817,918	-		GFF4833	0.77	-0.3
4,817,920	+		GFF4833	0.77	+0.4
4,817,920	+		GFF4833	0.77	-0.1
4,817,920	+		GFF4833	0.77	+0.1
4,817,965	+		GFF4833	0.82	-0.6
4,817,965	+		GFF4833	0.82	+0.9
4,817,965	+		GFF4833	0.82	-2.2
4,817,965	+		GFF4833	0.82	-0.5
4,817,973	-		GFF4833	0.83	-0.5
4,817,973	-		GFF4833	0.83	+0.0
4,817,977	+		GFF4833	0.84	-0.2
4,817,977	+		GFF4833	0.84	-1.8
4,817,977	+		GFF4833	0.84	-0.6
4,817,984	-		GFF4833	0.85	+1.6
4,817,985	-		GFF4833	0.85	+0.2
4,817,985	-		GFF4833	0.85	+0.9
4,817,985	-		GFF4833	0.85	+1.1
4,817,987	+		GFF4833	0.85	-0.6
4,817,987	+		GFF4833	0.85	-0.2
4,817,993	-		GFF4833	0.86	+0.4
4,818,007	+		GFF4833	0.87	+0.0
4,818,057	+				-0.5
4,818,057	+				-0.9
4,818,057	+				+0.6
4,818,058	+				+0.0
4,818,065	-				+0.1
4,818,088	-				+1.1
4,818,090	+				+1.4
4,818,113	+				+0.8
4,818,131	+				-1.4
4,818,136	-				+1.1
4,818,139	-				+0.5
4,818,146	+				+0.4
4,818,188	-				-0.1
4,818,190	+				-0.3
4,818,198	-				-0.6
4,818,246	+		GFF4834	0.10	+0.7
4,818,264	+		GFF4834	0.13	-0.3
4,818,272	+		GFF4834	0.15	+0.5
4,818,272	-		GFF4834	0.15	+0.0
4,818,272	-		GFF4834	0.15	-0.3
4,818,313	+		GFF4834	0.22	-0.2
4,818,318	+		GFF4834	0.23	+1.0
4,818,326	-		GFF4834	0.24	-1.2
4,818,335	+		GFF4834	0.26	+1.6
4,818,343	-		GFF4834	0.27	-0.4
4,818,363	-		GFF4834	0.30	-1.9
4,818,387	-		GFF4834	0.35	-0.2
4,818,387	-		GFF4834	0.35	-1.1
4,818,397	-		GFF4834	0.36	-1.4
4,818,487	-		GFF4834	0.52	-0.7
4,818,523	+		GFF4834	0.58	+1.1
4,818,536	+		GFF4834	0.60	+0.1
4,818,539	-		GFF4834	0.61	+0.7
4,818,556	+		GFF4834	0.64	+0.9
4,818,564	-		GFF4834	0.65	+1.4
4,818,564	-		GFF4834	0.65	+0.2
4,818,571	-		GFF4834	0.66	-1.0
4,818,574	-		GFF4834	0.67	+1.7
4,818,581	-		GFF4834	0.68	+0.9
4,818,588	+		GFF4834	0.69	+0.6
4,818,601	-		GFF4834	0.72	+1.2
4,818,629	-		GFF4834	0.76	+0.4
4,818,642	-		GFF4834	0.79	+0.4
4,818,642	-		GFF4834	0.79	+0.8
4,818,644	+		GFF4834	0.79	-0.4
4,818,653	-		GFF4834	0.80	+0.0
4,818,734	+				+0.7
4,818,734	+				+0.7
4,818,739	+				-1.8
4,818,739	+				-1.0
4,818,739	+				-0.4
4,818,742	-				+0.5
4,818,742	-				+0.1
4,818,755	+				+0.4
4,818,771	+				+0.6
4,818,773	-				-0.9
4,818,898	+				-2.2
4,818,898	+				-0.7
4,818,946	+				+0.9
4,818,948	+				+1.0
4,818,948	+				-1.8
4,818,953	+				+0.6
4,818,956	-				-0.8
4,818,972	+				+0.4
4,818,972	+				+0.6
4,818,972	+				-1.6
4,818,972	+				-1.1
4,818,972	+				-0.4
4,818,980	-				+0.6
4,818,980	-				+0.6
4,818,980	-				-0.4
4,818,980	-				+0.2
4,818,991	+				+0.1
4,819,002	-				+1.2
4,819,018	+		GFF4835	0.12	-0.5
4,819,018	+		GFF4835	0.12	+1.3
4,819,018	+		GFF4835	0.12	-0.4
4,819,018	+		GFF4835	0.12	+1.1
4,819,020	-		GFF4835	0.12	+0.3
4,819,026	-		GFF4835	0.12	+1.3
4,819,026	-		GFF4835	0.12	+0.2
4,819,026	-		GFF4835	0.12	-0.7
4,819,026	-		GFF4835	0.12	+1.0
4,819,036	-		GFF4835	0.13	-0.0
4,819,109	-		GFF4835	0.21	+1.6