Strain Fitness in Sphingobium sp. HT1-2 around GFF4818

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,802,319	+				+0.6
4,802,338	+		GFF4815	0.14	-0.1
4,802,372	+		GFF4815	0.21	-2.3
4,802,380	-		GFF4815	0.22	-1.8
4,802,380	-		GFF4815	0.22	-0.4
4,802,386	+		GFF4815	0.24	+1.1
4,802,394	-		GFF4815	0.25	+0.7
4,802,394	-		GFF4815	0.25	+0.6
4,802,406	-		GFF4815	0.28	+0.3
4,802,417	-		GFF4815	0.30	+0.3
4,802,419	+		GFF4815	0.31	+0.2
4,802,422	-		GFF4815	0.31	-0.7
4,802,422	-		GFF4815	0.31	-1.6
4,802,425	-		GFF4815	0.32	-0.7
4,802,427	-		GFF4815	0.32	+1.2
4,802,477	-		GFF4815	0.43	+0.9
4,802,488	-		GFF4815	0.45	-0.8
4,802,498	-		GFF4815	0.47	-0.4
4,802,499	-		GFF4815	0.47	-1.2
4,802,526	-		GFF4815	0.53	-0.8
4,802,534	+		GFF4815	0.55	+0.3
4,802,534	+		GFF4815	0.55	+0.3
4,802,542	+		GFF4815	0.56	-0.1
4,802,542	+		GFF4815	0.56	+0.8
4,802,542	-		GFF4815	0.56	-0.4
4,802,550	-		GFF4815	0.58	-0.1
4,802,558	+		GFF4815	0.60	-0.2
4,802,566	-		GFF4815	0.61	+0.2
4,802,587	-		GFF4815	0.66	-1.3
4,802,591	+		GFF4815	0.67	+0.8
4,802,656	+		GFF4815	0.80	+0.9
4,802,656	+		GFF4815	0.80	+0.2
4,802,656	+		GFF4815	0.80	+0.2
4,802,664	-		GFF4815	0.82	+1.0
4,802,670	+		GFF4815	0.83	-1.5
4,802,678	+		GFF4815	0.85	+1.3
4,802,678	-		GFF4815	0.85	+0.1
4,802,678	-		GFF4815	0.85	-0.5
4,802,697	+		GFF4815	0.89	+0.1
4,802,738	+				-1.1
4,802,764	-				+0.9
4,802,824	-		GFF4816	0.20	-1.3
4,802,846	+		GFF4816	0.38	+0.1
4,802,846	+		GFF4816	0.38	+0.3
4,802,883	-		GFF4816	0.68	+1.4
4,802,892	+		GFF4816	0.76	-0.1
4,802,915	+				+0.9
4,802,923	-				+1.5
4,802,923	-				+0.3
4,802,923	-				-1.0
4,802,923	-				+0.3
4,802,928	-				-0.0
4,802,971	-				+0.7
4,803,049	+		GFF4817	0.22	-0.2
4,803,049	+		GFF4817	0.22	+0.3
4,803,062	-		GFF4817	0.28	-0.4
4,803,062	-		GFF4817	0.28	-0.5
4,803,071	-		GFF4817	0.33	-0.9
4,803,087	+		GFF4817	0.42	-0.4
4,803,096	-		GFF4817	0.47	+0.4
4,803,108	+		GFF4817	0.53	+0.1
4,803,108	+		GFF4817	0.53	+0.2
4,803,108	+		GFF4817	0.53	+0.0
4,803,160	+		GFF4817	0.81	-1.5
4,803,160	+		GFF4817	0.81	-0.6
4,803,161	-		GFF4817	0.82	+0.3
4,803,164	+		GFF4817	0.83	-1.0
4,803,167	-		GFF4817	0.85	+1.1
4,803,172	-		GFF4817	0.88	-1.0
4,803,213	-				+0.0
4,803,226	-				+0.9
4,803,226	-				+0.9
4,803,261	-				+0.6
4,803,303	-				-0.9
4,803,303	-				-1.4
4,803,311	-				+0.7
4,803,345	+				-0.9
4,803,374	-				-0.2
4,803,392	+				-0.5
4,803,392	+				-0.8
4,803,400	-				-0.1
4,803,401	+				-0.2
4,803,407	+				+0.2
4,803,415	-				-1.0
4,803,422	-		GFF4818	0.10	+0.1
4,803,434	-		GFF4818	0.11	+0.7
4,803,461	+		GFF4818	0.14	-0.8
4,803,468	+		GFF4818	0.15	-0.9
4,803,468	+		GFF4818	0.15	-0.6
4,803,472	+		GFF4818	0.15	-1.2
4,803,476	-		GFF4818	0.15	+0.0
4,803,476	-		GFF4818	0.15	+0.5
4,803,524	+		GFF4818	0.20	+1.5
4,803,524	+		GFF4818	0.20	-2.2
4,803,527	-		GFF4818	0.20	-0.3
4,803,532	-		GFF4818	0.21	+0.8
4,803,539	+		GFF4818	0.21	-0.4
4,803,549	-		GFF4818	0.22	-0.6
4,803,571	+		GFF4818	0.24	-1.8
4,803,615	-		GFF4818	0.28	-0.2
4,803,615	-		GFF4818	0.28	+1.7
4,803,647	+		GFF4818	0.31	+0.3
4,803,649	+		GFF4818	0.32	+0.9
4,803,649	+		GFF4818	0.32	-0.9
4,803,649	+		GFF4818	0.32	+0.8
4,803,649	+		GFF4818	0.32	-1.5
4,803,651	+		GFF4818	0.32	+0.6
4,803,651	+		GFF4818	0.32	-0.5
4,803,651	+		GFF4818	0.32	-1.4
4,803,651	+		GFF4818	0.32	+0.1
4,803,657	-		GFF4818	0.32	+0.5
4,803,657	-		GFF4818	0.32	-0.5
4,803,659	-		GFF4818	0.33	+1.0
4,803,679	+		GFF4818	0.34	-1.5
4,803,705	+		GFF4818	0.37	-2.6
4,803,716	+		GFF4818	0.38	-0.9
4,803,724	-		GFF4818	0.39	-0.3
4,803,741	-		GFF4818	0.40	-0.2
4,803,784	+		GFF4818	0.44	-0.2
4,803,784	+		GFF4818	0.44	+0.9
4,803,784	+		GFF4818	0.44	-1.2
4,803,792	-		GFF4818	0.45	-0.8
4,803,792	-		GFF4818	0.45	-1.0
4,803,792	-		GFF4818	0.45	+0.3
4,803,792	-		GFF4818	0.45	-1.5
4,803,816	+		GFF4818	0.47	+0.7
4,803,848	+		GFF4818	0.50	-2.1
4,803,848	+		GFF4818	0.50	-0.6
4,803,856	-		GFF4818	0.51	+1.5
4,803,856	-		GFF4818	0.51	+0.6
4,803,856	-		GFF4818	0.51	-0.3
4,803,856	-		GFF4818	0.51	-0.7
4,803,859	+		GFF4818	0.51	-2.1
4,803,869	+		GFF4818	0.52	-0.4
4,803,869	+		GFF4818	0.52	-1.9
4,803,877	-		GFF4818	0.53	-2.1
4,803,878	-		GFF4818	0.53	-0.1
4,803,883	-		GFF4818	0.54	+0.8
4,803,885	+		GFF4818	0.54	+0.0
4,803,885	-		GFF4818	0.54	-0.4
4,803,885	-		GFF4818	0.54	-0.2
4,803,893	-		GFF4818	0.55	-2.2
4,803,902	+		GFF4818	0.55	-0.2
4,803,912	+		GFF4818	0.56	+0.3
4,803,952	-		GFF4818	0.60	-0.3
4,803,956	-		GFF4818	0.60	+0.7
4,804,012	+		GFF4818	0.66	+0.6
4,804,012	+		GFF4818	0.66	+0.4
4,804,012	+		GFF4818	0.66	+0.7
4,804,020	-		GFF4818	0.66	-0.2
4,804,042	+		GFF4818	0.69	+0.8
4,804,042	+		GFF4818	0.69	+1.3
4,804,042	+		GFF4818	0.69	-1.4
4,804,046	-		GFF4818	0.69	-1.2
4,804,050	-		GFF4818	0.69	+0.3
4,804,050	-		GFF4818	0.69	+0.2
4,804,084	+		GFF4818	0.72	-0.9
4,804,084	+		GFF4818	0.72	+0.4
4,804,084	+		GFF4818	0.72	-0.3
4,804,092	-		GFF4818	0.73	+2.0
4,804,092	-		GFF4818	0.73	-0.4
4,804,092	-		GFF4818	0.73	-0.2
4,804,092	-		GFF4818	0.73	-0.6
4,804,092	-		GFF4818	0.73	-0.6
4,804,092	-		GFF4818	0.73	+0.2
4,804,092	-		GFF4818	0.73	+1.5
4,804,113	+		GFF4818	0.75	-1.8
4,804,137	+		GFF4818	0.77	-0.4
4,804,145	-		GFF4818	0.78	-0.2
4,804,186	-		GFF4818	0.82	-2.1
4,804,223	+		GFF4818	0.86	-0.8
4,804,223	+		GFF4818	0.86	+1.0
4,804,230	+		GFF4818	0.86	+1.0
4,804,231	-		GFF4818	0.86	+0.1
4,804,231	-		GFF4818	0.86	-0.6
4,804,231	-		GFF4818	0.86	+0.1
4,804,231	-		GFF4818	0.86	-0.8
4,804,231	-		GFF4818	0.86	-0.7
4,804,231	-		GFF4818	0.86	-0.5
4,804,231	-		GFF4818	0.86	-2.1
4,804,248	+		GFF4818	0.88	-0.5
4,804,262	+		GFF4818	0.89	-0.5
4,804,275	-				-1.8
4,804,275	-				-0.0
4,804,284	+				-1.2
4,804,304	+				-1.0
4,804,304	+				-0.1
4,804,304	+				-0.1
4,804,304	+				-1.2
4,804,312	-				+1.1
4,804,317	+				-0.9
4,804,322	+				-0.1
4,804,327	+				-0.5
4,804,408	-				+0.7
4,804,424	+				+0.5
4,804,439	+				+0.6
4,804,439	+				+0.3
4,804,439	-				-1.0
4,804,445	+				-0.5
4,804,457	-				-0.6
4,804,457	-				-1.0
4,804,459	+				-0.5
4,804,464	+				+1.6
4,804,498	+				+0.5
4,804,506	-				+0.3
4,804,529	-				-0.3
4,804,534	+				+0.2
4,804,534	+				-2.1
4,804,559	-				-0.9
4,804,560	-				+1.7
4,804,560	-				-0.7
4,804,585	+				+0.9
4,804,618	-				+1.1
4,804,620	+				-0.9
4,804,685	+				-1.3
4,804,685	+				+0.6
4,804,685	+				-1.9
4,804,685	+				-0.1
4,804,688	-				+1.1
4,804,690	+				+1.1
4,804,693	-				+0.9
4,804,693	-				+0.7
4,804,693	-				+0.6
4,804,693	-				-0.0
4,804,693	-				+0.3
4,804,693	-				+0.3
4,804,693	-				-0.9
4,804,693	-				-1.5
4,804,695	+				+0.8
4,804,695	+				-0.5
4,804,696	+				-1.2
4,804,715	-		GFF4819	0.10	-0.1
4,804,721	+		GFF4819	0.10	-1.5
4,804,731	+		GFF4819	0.11	+0.5
4,804,733	+		GFF4819	0.11	+0.9
4,804,739	-		GFF4819	0.11	-0.5
4,804,762	+		GFF4819	0.12	-1.5
4,804,762	+		GFF4819	0.12	-1.3
4,804,769	-		GFF4819	0.13	-0.8
4,804,784	+		GFF4819	0.13	+0.5
4,804,792	+		GFF4819	0.14	-0.0
4,804,792	+		GFF4819	0.14	+1.1
4,804,792	+		GFF4819	0.14	+0.8
4,804,792	+		GFF4819	0.14	+0.3
4,804,792	+		GFF4819	0.14	+0.1
4,804,792	+		GFF4819	0.14	-1.1
4,804,800	-		GFF4819	0.14	-0.8
4,804,800	-		GFF4819	0.14	+0.2
4,804,800	-		GFF4819	0.14	-0.1
4,804,802	+		GFF4819	0.14	-0.9
4,804,805	-		GFF4819	0.14	+0.0
4,804,805	-		GFF4819	0.14	+0.9
4,804,810	-		GFF4819	0.14	+1.0
4,804,818	-		GFF4819	0.15	-1.1
4,804,828	-		GFF4819	0.15	+0.2
4,804,918	-		GFF4819	0.19	-0.2
4,804,927	-		GFF4819	0.20	-0.6
4,804,945	-		GFF4819	0.20	+0.2
4,804,947	-		GFF4819	0.21	-0.9
4,804,976	+		GFF4819	0.22	+0.8
4,804,979	+		GFF4819	0.22	+1.0
4,804,983	+		GFF4819	0.22	+0.7
4,804,987	+		GFF4819	0.22	+1.5
4,804,989	-		GFF4819	0.22	+1.0
4,804,991	+		GFF4819	0.23	+0.2
4,804,991	-		GFF4819	0.23	+0.5
4,804,994	-		GFF4819	0.23	+0.2
4,804,994	-		GFF4819	0.23	-0.1
4,805,034	+		GFF4819	0.24	-0.7
4,805,034	+		GFF4819	0.24	+0.7
4,805,035	+		GFF4819	0.25	+1.1
4,805,036	+		GFF4819	0.25	+0.8
4,805,042	-		GFF4819	0.25	-0.1
4,805,051	+		GFF4819	0.25	+0.2
4,805,053	+		GFF4819	0.25	-1.0
4,805,053	+		GFF4819	0.25	+0.2
4,805,053	+		GFF4819	0.25	+0.7
4,805,053	+		GFF4819	0.25	+0.4
4,805,053	+		GFF4819	0.25	-0.1
4,805,053	+		GFF4819	0.25	+0.2
4,805,053	+		GFF4819	0.25	-2.1
4,805,053	+		GFF4819	0.25	+0.4
4,805,053	+		GFF4819	0.25	-0.6
4,805,058	+		GFF4819	0.26	-1.7
4,805,058	+		GFF4819	0.26	+0.5
4,805,058	+		GFF4819	0.26	+0.8
4,805,061	-		GFF4819	0.26	-1.7
4,805,061	-		GFF4819	0.26	+1.0
4,805,061	-		GFF4819	0.26	-1.1
4,805,061	-		GFF4819	0.26	+0.8
4,805,061	-		GFF4819	0.26	+1.1
4,805,061	-		GFF4819	0.26	+0.3
4,805,061	-		GFF4819	0.26	+0.7
4,805,061	-		GFF4819	0.26	+0.4
4,805,061	-		GFF4819	0.26	+0.5
4,805,066	-		GFF4819	0.26	-1.8
4,805,066	-		GFF4819	0.26	-0.1
4,805,066	-		GFF4819	0.26	+0.0
4,805,068	+		GFF4819	0.26	-0.3
4,805,075	+		GFF4819	0.26	+0.3
4,805,076	-		GFF4819	0.26	+0.2
4,805,083	-		GFF4819	0.27	+0.2
4,805,083	-		GFF4819	0.27	+0.2
4,805,089	-		GFF4819	0.27	-0.2
4,805,094	-		GFF4819	0.27	-0.0
4,805,095	-		GFF4819	0.27	+0.2
4,805,095	-		GFF4819	0.27	+0.2
4,805,102	+		GFF4819	0.28	-0.7
4,805,104	+		GFF4819	0.28	-1.2
4,805,104	+		GFF4819	0.28	-0.4
4,805,104	+		GFF4819	0.28	-1.2
4,805,109	+		GFF4819	0.28	-0.9
4,805,112	-		GFF4819	0.28	-2.0
4,805,143	-		GFF4819	0.29	-1.0
4,805,175	+		GFF4819	0.31	-0.8
4,805,205	-		GFF4819	0.32	-0.3
4,805,209	-		GFF4819	0.32	+0.4
4,805,223	+		GFF4819	0.33	+0.4
4,805,261	-		GFF4819	0.35	+0.8
4,805,272	+		GFF4819	0.35	+1.0
4,805,278	+		GFF4819	0.35	-0.3
4,805,283	+		GFF4819	0.36	+0.6
4,805,328	-		GFF4819	0.38	+0.7
4,805,330	-		GFF4819	0.38	-0.6