Strain Fitness in Sphingobium sp. HT1-2 around GFF48

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF46 and GFF47 are separated by 74 nucleotidesGFF47 and GFF48 are separated by 4 nucleotidesGFF48 and GFF49 are separated by 69 nucleotidesGFF49 and GFF50 are separated by 66 nucleotides GFF46 - Alkaline phosphodiesterase I (EC 3.1.4.1) / Nucleotide pyrophosphatase (EC 3.6.1.9), at 36,290 to 37,570 GFF46 GFF47 - G:T/U mismatch-specific uracil/thymine DNA-glycosylase (EC 3.2.2.27), at 37,645 to 38,172 GFF47 GFF48 - GTP-binding and nucleic acid-binding protein YchF, at 38,177 to 39,277 GFF48 GFF49 - hypothetical protein, at 39,347 to 40,057 GFF49 GFF50 - Phosphoglucomutase (EC 5.4.2.2), at 40,124 to 41,752 GFF50 Position (kb) 38 39 40Strain fitness (log2 ratio) -2 -1 0 1 2at 37.177 kb on + strand, within GFF46at 37.182 kb on + strand, within GFF46at 37.186 kb on + strand, within GFF46at 37.194 kb on - strand, within GFF46at 37.204 kb on - strand, within GFF46at 37.204 kb on - strand, within GFF46at 37.284 kb on - strand, within GFF46at 37.320 kb on + strand, within GFF46at 37.334 kb on + strand, within GFF46at 37.338 kb on - strand, within GFF46at 37.351 kb on - strand, within GFF46at 37.356 kb on - strand, within GFF46at 37.375 kb on + strand, within GFF46at 37.381 kb on + strand, within GFF46at 37.382 kb on - strand, within GFF46at 37.389 kb on - strand, within GFF46at 37.535 kb on - strandat 37.537 kb on + strandat 37.545 kb on - strandat 37.545 kb on - strandat 37.545 kb on - strandat 37.545 kb on - strandat 37.545 kb on - strandat 37.545 kb on - strandat 37.566 kb on - strandat 37.568 kb on + strandat 37.604 kb on + strandat 37.604 kb on + strandat 37.604 kb on + strandat 37.604 kb on + strandat 37.604 kb on + strandat 37.612 kb on - strandat 37.612 kb on - strandat 37.612 kb on - strandat 37.612 kb on - strandat 37.614 kb on - strandat 37.622 kb on - strandat 37.622 kb on - strandat 37.635 kb on + strandat 37.651 kb on - strandat 37.655 kb on - strandat 37.661 kb on - strandat 37.665 kb on + strandat 37.676 kb on + strandat 37.676 kb on + strandat 37.676 kb on + strandat 37.676 kb on + strandat 37.676 kb on + strandat 37.684 kb on - strandat 37.684 kb on - strandat 37.684 kb on - strandat 37.684 kb on - strandat 37.684 kb on - strandat 37.727 kb on + strand, within GFF47at 37.735 kb on - strand, within GFF47at 37.735 kb on - strand, within GFF47at 37.737 kb on + strand, within GFF47at 37.750 kb on - strand, within GFF47at 37.780 kb on + strand, within GFF47at 37.837 kb on + strand, within GFF47at 37.845 kb on - strand, within GFF47at 37.858 kb on + strand, within GFF47at 37.863 kb on + strand, within GFF47at 37.863 kb on + strand, within GFF47at 37.863 kb on + strand, within GFF47at 37.863 kb on + strand, within GFF47at 37.871 kb on - strand, within GFF47at 37.871 kb on - strand, within GFF47at 37.871 kb on - strand, within GFF47at 37.871 kb on - strand, within GFF47at 37.885 kb on + strand, within GFF47at 37.888 kb on - strand, within GFF47at 37.888 kb on - strand, within GFF47at 37.890 kb on - strand, within GFF47at 37.920 kb on + strand, within GFF47at 37.924 kb on + strand, within GFF47at 37.924 kb on + strand, within GFF47at 37.929 kb on + strand, within GFF47at 37.929 kb on + strand, within GFF47at 37.939 kb on - strand, within GFF47at 37.943 kb on + strand, within GFF47at 37.947 kb on - strand, within GFF47at 37.952 kb on + strand, within GFF47at 37.971 kb on + strand, within GFF47at 37.974 kb on - strand, within GFF47at 37.981 kb on + strand, within GFF47at 37.981 kb on + strand, within GFF47at 37.984 kb on - strand, within GFF47at 37.989 kb on - strand, within GFF47at 38.011 kb on - strand, within GFF47at 38.021 kb on - strand, within GFF47at 38.024 kb on + strand, within GFF47at 38.045 kb on - strand, within GFF47at 38.063 kb on - strand, within GFF47at 38.063 kb on - strand, within GFF47at 38.063 kb on - strand, within GFF47at 38.117 kb on - strand, within GFF47at 38.117 kb on - strand, within GFF47at 38.117 kb on - strand, within GFF47at 38.142 kb on + strandat 38.142 kb on + strandat 38.175 kb on + strandat 38.295 kb on + strand, within GFF48at 38.478 kb on + strand, within GFF48at 38.632 kb on - strand, within GFF48at 38.922 kb on - strand, within GFF48at 38.927 kb on - strand, within GFF48at 39.014 kb on + strand, within GFF48at 39.027 kb on - strand, within GFF48at 39.029 kb on - strand, within GFF48at 39.068 kb on + strand, within GFF48at 39.216 kb on + strandat 39.226 kb on + strandat 39.334 kb on + strandat 39.362 kb on - strandat 39.399 kb on + strandat 39.407 kb on - strandat 39.444 kb on - strand, within GFF49at 39.536 kb on + strand, within GFF49at 39.549 kb on + strand, within GFF49at 39.582 kb on + strand, within GFF49at 39.590 kb on - strand, within GFF49at 39.608 kb on - strand, within GFF49at 39.629 kb on - strand, within GFF49at 39.653 kb on + strand, within GFF49at 39.661 kb on - strand, within GFF49at 39.691 kb on + strand, within GFF49at 39.699 kb on - strand, within GFF49at 39.721 kb on + strand, within GFF49at 39.721 kb on + strand, within GFF49at 39.729 kb on - strand, within GFF49at 39.731 kb on + strand, within GFF49at 39.780 kb on + strand, within GFF49at 39.780 kb on + strand, within GFF49at 39.780 kb on + strand, within GFF49at 39.780 kb on + strand, within GFF49at 39.787 kb on - strand, within GFF49at 39.788 kb on - strand, within GFF49at 39.788 kb on - strand, within GFF49at 39.788 kb on - strand, within GFF49at 39.794 kb on - strand, within GFF49at 39.804 kb on - strand, within GFF49at 39.831 kb on + strand, within GFF49at 39.836 kb on + strand, within GFF49at 39.836 kb on + strand, within GFF49at 39.839 kb on - strand, within GFF49at 39.842 kb on + strand, within GFF49at 39.844 kb on - strand, within GFF49at 39.844 kb on - strand, within GFF49at 39.844 kb on - strand, within GFF49at 39.844 kb on - strand, within GFF49at 39.845 kb on - strand, within GFF49at 39.856 kb on - strand, within GFF49at 39.894 kb on + strand, within GFF49at 39.914 kb on + strand, within GFF49at 39.939 kb on + strand, within GFF49at 39.947 kb on - strand, within GFF49at 39.978 kb on + strand, within GFF49at 39.998 kb on + strandat 39.998 kb on + strandat 40.006 kb on - strandat 40.006 kb on - strandat 40.006 kb on - strandat 40.065 kb on + strandat 40.073 kb on - strandat 40.091 kb on - strandat 40.102 kb on + strandat 40.130 kb on - strandat 40.135 kb on - strandat 40.135 kb on - strandat 40.139 kb on + strandat 40.142 kb on - strandat 40.147 kb on - strandat 40.147 kb on - strandat 40.147 kb on - strandat 40.147 kb on - strandat 40.147 kb on - strandat 40.147 kb on - strandat 40.152 kb on - strandat 40.268 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate
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37,177 + GFF46 0.69 +0.1
37,182 + GFF46 0.70 +0.8
37,186 + GFF46 0.70 +0.4
37,194 - GFF46 0.71 -0.2
37,204 - GFF46 0.71 -1.0
37,204 - GFF46 0.71 +1.4
37,284 - GFF46 0.78 -0.7
37,320 + GFF46 0.80 -1.3
37,334 + GFF46 0.81 -0.8
37,338 - GFF46 0.82 -0.4
37,351 - GFF46 0.83 +0.5
37,356 - GFF46 0.83 +0.8
37,375 + GFF46 0.85 -0.1
37,381 + GFF46 0.85 -0.6
37,382 - GFF46 0.85 -0.6
37,389 - GFF46 0.86 +0.9
37,535 - +0.9
37,537 + +0.5
37,545 - +1.3
37,545 - -1.2
37,545 - -0.6
37,545 - +0.4
37,545 - -1.3
37,545 - -0.3
37,566 - -1.5
37,568 + -0.4
37,604 + +0.7
37,604 + -0.1
37,604 + +0.4
37,604 + +0.5
37,604 + +0.5
37,612 - +0.9
37,612 - +1.2
37,612 - -0.3
37,612 - +0.1
37,614 - +0.2
37,622 - +0.1
37,622 - +0.2
37,635 + -1.0
37,651 - -0.4
37,655 - +1.2
37,661 - +0.4
37,665 + +1.5
37,676 + +0.2
37,676 + -0.7
37,676 + -1.0
37,676 + -0.9
37,676 + +0.1
37,684 - -0.2
37,684 - -1.1
37,684 - +0.7
37,684 - -0.2
37,684 - +1.1
37,727 + GFF47 0.16 -0.4
37,735 - GFF47 0.17 +1.4
37,735 - GFF47 0.17 -1.2
37,737 + GFF47 0.17 +1.1
37,750 - GFF47 0.20 +0.5
37,780 + GFF47 0.26 -1.8
37,837 + GFF47 0.36 -0.8
37,845 - GFF47 0.38 +0.0
37,858 + GFF47 0.40 -1.1
37,863 + GFF47 0.41 -0.4
37,863 + GFF47 0.41 -1.3
37,863 + GFF47 0.41 +1.0
37,863 + GFF47 0.41 +0.5
37,871 - GFF47 0.43 -1.6
37,871 - GFF47 0.43 +0.2
37,871 - GFF47 0.43 +0.5
37,871 - GFF47 0.43 +0.2
37,885 + GFF47 0.45 +0.7
37,888 - GFF47 0.46 -0.4
37,888 - GFF47 0.46 +0.2
37,890 - GFF47 0.46 +0.1
37,920 + GFF47 0.52 +0.5
37,924 + GFF47 0.53 -1.4
37,924 + GFF47 0.53 +0.4
37,929 + GFF47 0.54 +0.2
37,929 + GFF47 0.54 +1.0
37,939 - GFF47 0.56 -0.4
37,943 + GFF47 0.56 -0.6
37,947 - GFF47 0.57 -0.1
37,952 + GFF47 0.58 -0.3
37,971 + GFF47 0.62 +1.2
37,974 - GFF47 0.62 -0.1
37,981 + GFF47 0.64 -0.5
37,981 + GFF47 0.64 -1.5
37,984 - GFF47 0.64 -1.3
37,989 - GFF47 0.65 +0.3
38,011 - GFF47 0.69 -0.0
38,021 - GFF47 0.71 -0.4
38,024 + GFF47 0.72 -2.2
38,045 - GFF47 0.76 -0.1
38,063 - GFF47 0.79 +1.1
38,063 - GFF47 0.79 +2.1
38,063 - GFF47 0.79 +0.9
38,117 - GFF47 0.89 +1.1
38,117 - GFF47 0.89 +1.7
38,117 - GFF47 0.89 +1.3
38,142 + +0.4
38,142 + -0.5
38,175 + +0.5
38,295 + GFF48 0.11 +0.1
38,478 + GFF48 0.27 -0.2
38,632 - GFF48 0.41 +1.4
38,922 - GFF48 0.68 +0.1
38,927 - GFF48 0.68 -0.6
39,014 + GFF48 0.76 +2.0
39,027 - GFF48 0.77 +0.4
39,029 - GFF48 0.77 -0.6
39,068 + GFF48 0.81 +0.4
39,216 + +0.5
39,226 + +0.4
39,334 + +0.3
39,362 - +0.4
39,399 + +1.0
39,407 - +1.1
39,444 - GFF49 0.14 +0.4
39,536 + GFF49 0.27 +1.8
39,549 + GFF49 0.28 -0.0
39,582 + GFF49 0.33 -0.5
39,590 - GFF49 0.34 +1.2
39,608 - GFF49 0.37 +1.1
39,629 - GFF49 0.40 +1.0
39,653 + GFF49 0.43 +0.2
39,661 - GFF49 0.44 +0.4
39,691 + GFF49 0.48 -0.1
39,699 - GFF49 0.50 -0.8
39,721 + GFF49 0.53 -1.1
39,721 + GFF49 0.53 -0.4
39,729 - GFF49 0.54 -0.6
39,731 + GFF49 0.54 +0.1
39,780 + GFF49 0.61 -1.0
39,780 + GFF49 0.61 +0.2
39,780 + GFF49 0.61 -2.4
39,780 + GFF49 0.61 +2.2
39,787 - GFF49 0.62 +0.0
39,788 - GFF49 0.62 +2.2
39,788 - GFF49 0.62 +0.2
39,788 - GFF49 0.62 +0.1
39,794 - GFF49 0.63 -0.8
39,804 - GFF49 0.64 -1.4
39,831 + GFF49 0.68 +0.9
39,836 + GFF49 0.69 +0.4
39,836 + GFF49 0.69 +1.5
39,839 - GFF49 0.69 +1.4
39,842 + GFF49 0.70 -0.6
39,844 - GFF49 0.70 -1.3
39,844 - GFF49 0.70 -1.4
39,844 - GFF49 0.70 -0.0
39,844 - GFF49 0.70 -0.4
39,845 - GFF49 0.70 +0.9
39,856 - GFF49 0.72 -1.8
39,894 + GFF49 0.77 -1.9
39,914 + GFF49 0.80 +1.1
39,939 + GFF49 0.83 -1.2
39,947 - GFF49 0.84 +1.3
39,978 + GFF49 0.89 +0.7
39,998 + -0.7
39,998 + -0.5
40,006 - -0.4
40,006 - +0.2
40,006 - -0.6
40,065 + +0.5
40,073 - -0.1
40,091 - -0.3
40,102 + +0.7
40,130 - +0.4
40,135 - +0.3
40,135 - -1.2
40,139 + +0.1
40,142 - +0.2
40,147 - +0.6
40,147 - -0.1
40,147 - +0.0
40,147 - +0.0
40,147 - +0.0
40,147 - -0.6
40,152 - -0.7
40,268 - +0.4

Or see this region's nucleotide sequence