Strain Fitness in Sphingobium sp. HT1-2 around GFF4794

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,788,129	-		GFF4792	0.58	-2.4
4,788,247	-		GFF4792	0.67	+0.6
4,788,284	+		GFF4792	0.70	+0.6
4,788,284	+		GFF4792	0.70	-1.3
4,788,292	-		GFF4792	0.71	+0.0
4,788,301	+		GFF4792	0.71	-0.7
4,788,303	+		GFF4792	0.71	-1.5
4,788,303	+		GFF4792	0.71	+0.7
4,788,351	+		GFF4792	0.75	+0.4
4,788,359	-		GFF4792	0.76	-0.6
4,788,410	+		GFF4792	0.79	+0.3
4,788,410	+		GFF4792	0.79	-0.3
4,788,410	+		GFF4792	0.79	+0.0
4,788,418	-		GFF4792	0.80	-0.6
4,788,418	-		GFF4792	0.80	-0.4
4,788,420	+		GFF4792	0.80	-2.4
4,788,452	+		GFF4792	0.83	-0.5
4,788,464	-		GFF4792	0.84	+1.0
4,788,520	-		GFF4792	0.88	-0.3
4,788,533	-		GFF4792	0.89	+0.3
4,788,533	-		GFF4792	0.89	+0.2
4,788,533	-		GFF4792	0.89	-0.4
4,788,554	-				-1.4
4,788,563	+				-1.4
4,788,571	-				-0.9
4,788,571	-				+0.8
4,788,573	-				+0.2
4,788,639	+				-1.1
4,788,647	-				-1.2
4,788,647	-				-0.7
4,788,683	-				-0.2
4,788,683	-				-0.3
4,788,683	-				-0.5
4,788,683	-				+0.5
4,788,683	-				-0.8
4,788,696	-				-0.2
4,788,699	+				-1.3
4,788,699	+				-1.0
4,788,699	+				-0.7
4,788,795	+		GFF4793	0.24	-0.3
4,788,802	+		GFF4793	0.25	-0.7
4,788,802	+		GFF4793	0.25	-0.4
4,788,803	-		GFF4793	0.26	-1.0
4,788,803	-		GFF4793	0.26	-0.1
4,788,810	-		GFF4793	0.27	-1.6
4,788,818	+		GFF4793	0.29	-0.9
4,788,818	+		GFF4793	0.29	+0.2
4,788,837	+		GFF4793	0.34	-0.5
4,788,922	-		GFF4793	0.55	+0.4
4,788,942	-		GFF4793	0.60	-0.1
4,788,948	+		GFF4793	0.62	-1.6
4,788,948	+		GFF4793	0.62	-0.7
4,788,984	+		GFF4793	0.71	-1.1
4,788,984	-		GFF4793	0.71	+0.1
4,788,994	+		GFF4793	0.73	-1.0
4,788,994	+		GFF4793	0.73	+0.2
4,789,002	-		GFF4793	0.75	-1.1
4,789,002	-		GFF4793	0.75	-1.1
4,789,002	-		GFF4793	0.75	+1.1
4,789,002	-		GFF4793	0.75	-1.4
4,789,048	-		GFF4793	0.87	+1.3
4,790,081	+		GFF4794	0.66	-0.9
4,790,081	+		GFF4794	0.66	-0.3
4,790,081	+		GFF4794	0.66	-0.6
4,790,081	+		GFF4794	0.66	+1.1
4,790,081	+		GFF4794	0.66	-3.0
4,790,081	+		GFF4794	0.66	-0.5
4,790,081	+		GFF4794	0.66	-0.0
4,790,081	+		GFF4794	0.66	-1.4
4,790,081	+		GFF4794	0.66	+0.4
4,790,089	-		GFF4794	0.67	-1.2
4,790,167	-		GFF4794	0.72	-2.4
4,790,596	-				-1.8
4,790,666	+				-1.5
4,790,705	+				+0.1
4,790,705	+				+0.5
4,790,712	+				-0.4
4,790,713	-				-0.6
4,790,713	-				-1.5
4,790,771	+				+1.6
4,790,771	+				-1.8
4,790,771	+				-1.6
4,790,771	+				+1.0
4,790,771	+				-0.4
4,790,771	+				-0.7
4,790,779	-				+2.3
4,790,819	+		GFF4795	0.13	+0.6
4,790,860	-		GFF4795	0.23	-0.6
4,790,862	+		GFF4795	0.23	-0.0
4,790,866	-		GFF4795	0.24	+0.4
4,790,881	-		GFF4795	0.27	+0.1
4,790,890	+		GFF4795	0.29	-2.0
4,790,890	+		GFF4795	0.29	-1.5
4,790,890	+		GFF4795	0.29	-0.9
4,790,890	+		GFF4795	0.29	-0.9
4,790,898	-		GFF4795	0.31	+0.6
4,790,898	-		GFF4795	0.31	+1.3
4,790,905	+		GFF4795	0.32	-1.0
4,790,927	+		GFF4795	0.37	-0.7
4,790,940	-		GFF4795	0.40	-1.5
4,790,947	+		GFF4795	0.42	-1.4
4,790,947	+		GFF4795	0.42	-0.6
4,790,955	-		GFF4795	0.43	+0.8
4,790,955	-		GFF4795	0.43	-1.1
4,790,957	+		GFF4795	0.44	-0.3
4,790,957	+		GFF4795	0.44	-0.7
4,790,957	+		GFF4795	0.44	-0.7
4,790,957	+		GFF4795	0.44	-0.0
4,790,957	+		GFF4795	0.44	-0.1
4,790,957	+		GFF4795	0.44	-0.7
4,790,957	+		GFF4795	0.44	-2.9
4,790,957	+		GFF4795	0.44	+0.1
4,790,957	+		GFF4795	0.44	-0.2
4,790,957	+		GFF4795	0.44	-0.4
4,790,965	-		GFF4795	0.46	-0.5
4,790,965	-		GFF4795	0.46	-0.2
4,790,965	-		GFF4795	0.46	-0.4
4,790,965	-		GFF4795	0.46	-0.8
4,790,965	-		GFF4795	0.46	+1.0
4,790,965	-		GFF4795	0.46	+0.8
4,790,965	-		GFF4795	0.46	-1.5
4,790,965	-		GFF4795	0.46	-1.2
4,790,967	+		GFF4795	0.46	-0.6
4,790,973	+		GFF4795	0.47	+0.4
4,790,975	-		GFF4795	0.48	-0.0
4,790,979	+		GFF4795	0.49	+0.8
4,790,988	-		GFF4795	0.51	-2.6
4,791,006	-		GFF4795	0.55	+0.6
4,791,015	+		GFF4795	0.57	-1.3
4,791,037	+		GFF4795	0.62	-2.1
4,791,045	-		GFF4795	0.63	+0.8
4,791,068	-		GFF4795	0.68	-2.0
4,791,069	-		GFF4795	0.69	-0.8
4,791,071	+		GFF4795	0.69	-0.3
4,791,099	+		GFF4795	0.75	-0.5
4,791,107	-		GFF4795	0.77	-0.0
4,791,110	-		GFF4795	0.78	-0.7
4,791,116	-		GFF4795	0.79	-1.0
4,791,123	-		GFF4795	0.81	-1.5
4,791,153	+		GFF4795	0.87	-0.7
4,791,153	+		GFF4795	0.87	+0.8
4,791,153	+		GFF4795	0.87	-1.7
4,791,153	+		GFF4795	0.87	-1.0
4,791,153	+		GFF4795	0.87	+0.8
4,791,153	+		GFF4795	0.87	-0.1
4,791,153	+		GFF4795	0.87	-0.5
4,791,153	+		GFF4795	0.87	+0.1
4,791,153	+		GFF4795	0.87	-2.3
4,791,153	+		GFF4795	0.87	+0.2
4,791,161	-		GFF4795	0.89	-2.1
4,791,161	-		GFF4795	0.89	-2.1
4,791,161	-		GFF4795	0.89	+0.9
4,791,161	-		GFF4795	0.89	-0.3
4,791,161	-		GFF4795	0.89	+1.0
4,791,161	-		GFF4795	0.89	-0.7
4,791,161	-		GFF4795	0.89	-0.3
4,791,161	-		GFF4795	0.89	+1.5
4,791,161	-		GFF4795	0.89	+0.1
4,791,161	-		GFF4795	0.89	-0.8
4,791,161	-		GFF4795	0.89	-0.3
4,791,161	-		GFF4795	0.89	-0.2
4,791,161	-		GFF4795	0.89	+0.2
4,791,161	-		GFF4795	0.89	-1.8
4,791,161	-		GFF4795	0.89	-1.2
4,791,161	-		GFF4795	0.89	-1.3
4,791,161	-		GFF4795	0.89	-0.5
4,791,161	-		GFF4795	0.89	-1.1
4,791,161	-		GFF4795	0.89	-0.8
4,791,161	-		GFF4795	0.89	-0.3
4,791,161	-		GFF4795	0.89	-1.4
4,791,287	-				-0.8
4,791,287	-				-0.5
4,791,298	+				-0.1
4,791,449	+		GFF4796	0.20	-0.2
4,791,471	+		GFF4796	0.23	-1.0
4,791,471	+		GFF4796	0.23	+1.6
4,791,471	+		GFF4796	0.23	-0.0
4,791,471	+		GFF4796	0.23	-1.6
4,791,476	+		GFF4796	0.23	-1.5
4,791,479	-		GFF4796	0.24	-1.1
4,791,491	+		GFF4796	0.26	-0.1
4,791,491	+		GFF4796	0.26	-0.6
4,791,496	+		GFF4796	0.26	-0.8
4,791,499	-		GFF4796	0.27	+0.8
4,791,499	-		GFF4796	0.27	+0.3
4,791,526	+		GFF4796	0.31	-1.2
4,791,526	+		GFF4796	0.31	+0.7
4,791,526	+		GFF4796	0.31	+0.8
4,791,531	+		GFF4796	0.31	+1.0