Strain Fitness in Sphingobium sp. HT1-2 around GFF4749

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,748,309	-				-1.2
4,748,356	-				+1.3
4,748,363	+				-1.7
4,748,371	-				-0.1
4,748,371	-				-0.1
4,748,371	-				+0.1
4,748,371	-				+0.5
4,748,375	-				+0.6
4,748,375	-				-1.8
4,748,382	+				-0.3
4,748,412	-				-0.7
4,748,424	+				-0.2
4,748,427	+				+0.8
4,748,432	-				+0.9
4,748,435	+				-0.1
4,748,569	-		GFF4748	0.18	+1.1
4,748,573	+		GFF4748	0.19	+0.1
4,748,583	+		GFF4748	0.20	-1.6
4,748,586	-		GFF4748	0.21	-0.9
4,748,613	+		GFF4748	0.25	+0.2
4,748,613	+		GFF4748	0.25	+0.3
4,748,641	+		GFF4748	0.29	+0.2
4,748,641	+		GFF4748	0.29	+0.7
4,748,641	+		GFF4748	0.29	-1.0
4,748,649	-		GFF4748	0.30	+0.6
4,748,669	+		GFF4748	0.33	-1.5
4,748,679	+		GFF4748	0.35	-0.1
4,748,687	-		GFF4748	0.36	-0.5
4,748,691	+		GFF4748	0.37	+1.1
4,748,699	-		GFF4748	0.38	+0.0
4,748,717	-		GFF4748	0.41	-0.6
4,748,720	+		GFF4748	0.41	+0.5
4,748,723	-		GFF4748	0.42	+0.1
4,748,738	-		GFF4748	0.44	-0.1
4,748,743	+		GFF4748	0.45	-1.4
4,748,743	+		GFF4748	0.45	-0.2
4,748,743	+		GFF4748	0.45	-0.6
4,748,743	+		GFF4748	0.45	-0.9
4,748,743	+		GFF4748	0.45	-0.6
4,748,743	+		GFF4748	0.45	+0.7
4,748,743	+		GFF4748	0.45	+0.3
4,748,743	+		GFF4748	0.45	-1.8
4,748,743	+		GFF4748	0.45	-1.7
4,748,743	+		GFF4748	0.45	-0.5
4,748,743	+		GFF4748	0.45	+0.5
4,748,743	+		GFF4748	0.45	-0.7
4,748,743	+		GFF4748	0.45	-0.1
4,748,743	+		GFF4748	0.45	-1.2
4,748,743	+		GFF4748	0.45	-0.7
4,748,743	+		GFF4748	0.45	+0.6
4,748,743	+		GFF4748	0.45	-1.6
4,748,743	+		GFF4748	0.45	+0.4
4,748,743	+		GFF4748	0.45	-0.1
4,748,743	+		GFF4748	0.45	-0.2
4,748,746	-		GFF4748	0.45	+0.7
4,748,751	-		GFF4748	0.46	-2.8
4,748,751	-		GFF4748	0.46	-0.9
4,748,751	-		GFF4748	0.46	+0.9
4,748,751	-		GFF4748	0.46	-0.3
4,748,751	-		GFF4748	0.46	+1.4
4,748,751	-		GFF4748	0.46	+0.6
4,748,751	-		GFF4748	0.46	-0.1
4,748,751	-		GFF4748	0.46	-0.6
4,748,751	-		GFF4748	0.46	+0.1
4,748,751	-		GFF4748	0.46	+0.5
4,748,751	-		GFF4748	0.46	-1.8
4,748,751	-		GFF4748	0.46	-0.0
4,748,751	-		GFF4748	0.46	+1.0
4,748,751	-		GFF4748	0.46	-1.1
4,748,751	-		GFF4748	0.46	-0.1
4,748,751	-		GFF4748	0.46	+1.3
4,748,751	-		GFF4748	0.46	+0.9
4,748,751	-		GFF4748	0.46	-0.1
4,748,751	-		GFF4748	0.46	-0.2
4,748,751	-		GFF4748	0.46	+1.5
4,748,751	-		GFF4748	0.46	-1.1
4,748,751	-		GFF4748	0.46	-0.3
4,748,753	+		GFF4748	0.47	-1.1
4,748,753	+		GFF4748	0.47	+0.4
4,748,761	-		GFF4748	0.48	-1.0
4,748,761	-		GFF4748	0.48	-0.6
4,748,761	-		GFF4748	0.48	+0.3
4,748,780	+		GFF4748	0.51	-1.0
4,748,825	+		GFF4748	0.58	-1.5
4,748,833	-		GFF4748	0.59	-0.1
4,748,867	+		GFF4748	0.64	-0.2
4,748,915	+		GFF4748	0.72	-0.7
4,748,923	-		GFF4748	0.73	+1.2
4,748,940	-		GFF4748	0.76	-0.8
4,748,951	-		GFF4748	0.77	-0.5
4,748,992	+		GFF4748	0.84	+1.0
4,748,999	+		GFF4748	0.85	+1.0
4,749,002	-		GFF4748	0.85	-0.7
4,749,022	+		GFF4748	0.88	+0.9
4,749,023	+		GFF4748	0.88	-1.7
4,749,033	+				-0.6
4,749,033	+				-0.3
4,749,041	-				+1.2
4,749,041	-				-0.7
4,749,041	-				+0.6
4,749,067	+				+0.7
4,749,074	+				-0.5
4,749,074	+				-0.5
4,749,082	-				+0.5
4,749,082	-				+0.8
4,749,082	-				+0.4
4,749,084	+				+0.8
4,749,084	+				+1.2
4,749,084	+				+0.0
4,749,084	+				+0.3
4,749,084	+				-0.8
4,749,084	+				-0.0
4,749,084	+				+0.0
4,749,092	-				+0.3
4,749,116	+				+0.0
4,749,118	+				+0.9
4,749,118	+				+1.1
4,749,124	-				-1.9
4,749,126	-				+0.6
4,749,126	-				-0.8
4,749,126	-				+2.0
4,749,132	-				-0.4
4,749,136	+				-0.5
4,749,144	-				-0.1
4,749,145	+				-0.8
4,749,145	+				+0.4
4,749,145	+				-0.8
4,749,161	+				-0.0
4,749,179	-				-0.6
4,749,200	+				-1.0
4,749,292	-				-0.2
4,749,307	-				-0.8
4,749,309	-				+0.5
4,749,318	+				-1.5
4,749,319	+				-1.2
4,749,353	-		GFF4749	0.11	-0.2
4,749,353	-		GFF4749	0.11	+0.3
4,749,353	-		GFF4749	0.11	+0.1
4,749,381	+		GFF4749	0.18	+0.4
4,749,381	+		GFF4749	0.18	+0.1
4,749,404	+		GFF4749	0.23	-0.4
4,749,438	+		GFF4749	0.32	+1.5
4,749,438	+		GFF4749	0.32	+0.7
4,749,438	+		GFF4749	0.32	+0.1
4,749,438	+		GFF4749	0.32	+0.7
4,749,438	+		GFF4749	0.32	-0.7
4,749,438	+		GFF4749	0.32	-2.0
4,749,438	+		GFF4749	0.32	-0.1
4,749,438	+		GFF4749	0.32	-0.4
4,749,438	+		GFF4749	0.32	+0.3
4,749,446	-		GFF4749	0.34	-1.2
4,749,446	-		GFF4749	0.34	-0.3
4,749,446	-		GFF4749	0.34	+0.0
4,749,446	-		GFF4749	0.34	+0.7
4,749,446	-		GFF4749	0.34	-1.8
4,749,446	-		GFF4749	0.34	+0.0
4,749,446	-		GFF4749	0.34	+1.4
4,749,446	-		GFF4749	0.34	-2.0
4,749,446	-		GFF4749	0.34	-0.3
4,749,446	-		GFF4749	0.34	+0.9
4,749,448	+		GFF4749	0.34	-1.0
4,749,448	+		GFF4749	0.34	-1.9
4,749,451	-		GFF4749	0.35	-1.5
4,749,469	+		GFF4749	0.40	+0.8
4,749,491	+		GFF4749	0.45	+1.0
4,749,499	+		GFF4749	0.47	+0.7
4,749,499	+		GFF4749	0.47	+2.0
4,749,514	+		GFF4749	0.51	-0.2
4,749,514	+		GFF4749	0.51	+0.1
4,749,524	-		GFF4749	0.53	-0.8
4,749,579	-		GFF4749	0.67	-0.8
4,749,587	+		GFF4749	0.69	+0.7
4,749,592	+		GFF4749	0.70	-0.7
4,749,595	-		GFF4749	0.71	+1.1
4,749,600	-		GFF4749	0.72	+0.7
4,749,600	-		GFF4749	0.72	-0.4
4,749,600	-		GFF4749	0.72	-1.4
4,749,600	-		GFF4749	0.72	-2.4
4,749,606	+		GFF4749	0.73	+0.2
4,749,606	+		GFF4749	0.73	+1.1
4,749,607	-		GFF4749	0.74	+1.0
4,749,611	+		GFF4749	0.75	-0.2
4,749,621	+		GFF4749	0.77	+1.3
4,749,631	-		GFF4749	0.80	+0.3
4,749,645	-		GFF4749	0.83	+0.1
4,749,653	+		GFF4749	0.85	-0.1
4,749,654	+		GFF4749	0.85	+1.6
4,749,667	-		GFF4749	0.88	-0.2
4,749,667	-		GFF4749	0.88	-0.2
4,749,668	+		GFF4749	0.89	-0.8
4,749,668	+		GFF4749	0.89	-0.8
4,749,676	-				-1.0
4,749,680	+				-0.1
4,749,688	-				-0.8
4,749,692	+				+0.4
4,749,741	-				-0.7
4,749,758	-				+0.2
4,749,793	-				+0.8
4,749,859	+				-0.7
4,749,901	-		GFF4750	0.11	+0.8
4,749,905	+		GFF4750	0.12	-0.5
4,749,905	+		GFF4750	0.12	-1.9
4,749,908	+		GFF4750	0.12	-1.1
4,749,913	-		GFF4750	0.12	-0.4
4,749,913	-		GFF4750	0.12	+0.8
4,749,916	+		GFF4750	0.13	-0.5
4,749,937	+		GFF4750	0.14	-0.7
4,749,956	+		GFF4750	0.16	+0.3
4,749,971	+		GFF4750	0.17	+0.2
4,749,971	+		GFF4750	0.17	+0.1
4,749,972	-		GFF4750	0.17	-1.4
4,749,978	+		GFF4750	0.17	-2.5
4,749,978	+		GFF4750	0.17	-1.8
4,749,978	+		GFF4750	0.17	-0.5
4,749,978	+		GFF4750	0.17	-1.6
4,749,986	-		GFF4750	0.18	-0.6
4,749,986	-		GFF4750	0.18	-0.1
4,750,029	+		GFF4750	0.21	+1.0
4,750,032	-		GFF4750	0.22	+0.3
4,750,057	-		GFF4750	0.23	-0.2
4,750,071	+		GFF4750	0.25	+1.0
4,750,071	+		GFF4750	0.25	-0.3
4,750,071	+		GFF4750	0.25	-0.4
4,750,079	-		GFF4750	0.25	+0.1
4,750,079	-		GFF4750	0.25	-0.1
4,750,079	-		GFF4750	0.25	-1.2
4,750,081	+		GFF4750	0.25	+1.7
4,750,094	+		GFF4750	0.26	+0.2
4,750,094	+		GFF4750	0.26	+0.3
4,750,102	-		GFF4750	0.27	-1.7
4,750,102	-		GFF4750	0.27	-0.6
4,750,139	+		GFF4750	0.30	+0.7
4,750,140	+		GFF4750	0.30	+0.6
4,750,140	+		GFF4750	0.30	+0.9
4,750,148	-		GFF4750	0.30	+0.6
4,750,148	-		GFF4750	0.30	+0.3
4,750,148	-		GFF4750	0.30	-0.3
4,750,163	+		GFF4750	0.32	-0.9
4,750,163	+		GFF4750	0.32	+0.7
4,750,171	-		GFF4750	0.32	+0.8
4,750,171	-		GFF4750	0.32	-1.0
4,750,195	+		GFF4750	0.34	-0.3
4,750,197	+		GFF4750	0.34	-0.9
4,750,205	+		GFF4750	0.35	-1.4
4,750,207	+		GFF4750	0.35	-1.0
4,750,207	+		GFF4750	0.35	-1.0
4,750,207	+		GFF4750	0.35	+0.5
4,750,207	+		GFF4750	0.35	+0.1
4,750,207	+		GFF4750	0.35	+1.5
4,750,207	+		GFF4750	0.35	+1.2
4,750,207	+		GFF4750	0.35	+0.8
4,750,207	+		GFF4750	0.35	-0.6
4,750,207	+		GFF4750	0.35	+0.6
4,750,207	+		GFF4750	0.35	-0.2
4,750,207	+		GFF4750	0.35	-2.4
4,750,207	+		GFF4750	0.35	-0.6
4,750,207	+		GFF4750	0.35	+2.5
4,750,207	+		GFF4750	0.35	-1.3
4,750,207	+		GFF4750	0.35	+0.7
4,750,207	+		GFF4750	0.35	+0.5
4,750,207	+		GFF4750	0.35	-0.4
4,750,207	+		GFF4750	0.35	+0.4
4,750,210	-		GFF4750	0.35	+0.3
4,750,212	+		GFF4750	0.35	-0.4
4,750,215	-		GFF4750	0.36	-0.1
4,750,215	-		GFF4750	0.36	-0.3
4,750,215	-		GFF4750	0.36	+0.4
4,750,215	-		GFF4750	0.36	+0.8
4,750,215	-		GFF4750	0.36	+0.8
4,750,215	-		GFF4750	0.36	-0.3
4,750,215	-		GFF4750	0.36	-1.6
4,750,215	-		GFF4750	0.36	-0.8
4,750,215	-		GFF4750	0.36	+0.1
4,750,215	-		GFF4750	0.36	+0.1
4,750,215	-		GFF4750	0.36	-0.4
4,750,215	-		GFF4750	0.36	+0.6
4,750,215	-		GFF4750	0.36	+0.2
4,750,215	-		GFF4750	0.36	-0.0
4,750,215	-		GFF4750	0.36	+0.1
4,750,246	-		GFF4750	0.38	-1.8
4,750,285	-		GFF4750	0.41	-0.5
4,750,345	+		GFF4750	0.46	-0.6
4,750,363	-		GFF4750	0.47	-2.1
4,750,368	+		GFF4750	0.47	+1.3
4,750,397	+		GFF4750	0.50	+0.4
4,750,397	+		GFF4750	0.50	-0.2
4,750,400	-		GFF4750	0.50	-2.4
4,750,400	-		GFF4750	0.50	-0.0
4,750,405	-		GFF4750	0.50	+0.8
4,750,405	-		GFF4750	0.50	+1.1
4,750,405	-		GFF4750	0.50	-1.0
4,750,416	+		GFF4750	0.51	+0.2
4,750,426	-		GFF4750	0.52	+0.3
4,750,437	+		GFF4750	0.53	+1.0
4,750,437	-		GFF4750	0.53	-0.3
4,750,439	+		GFF4750	0.53	+0.4
4,750,447	-		GFF4750	0.53	-0.2
4,750,463	-		GFF4750	0.55	-2.2
4,750,463	-		GFF4750	0.55	+0.8
4,750,469	-		GFF4750	0.55	-1.0
4,750,482	-		GFF4750	0.56	-0.9
4,750,534	-		GFF4750	0.60	-0.3
4,750,552	+		GFF4750	0.61	+0.1
4,750,601	+		GFF4750	0.65	-0.5
4,750,605	+		GFF4750	0.66	+1.5
4,750,605	+		GFF4750	0.66	-1.7
4,750,606	+		GFF4750	0.66	+0.3
4,750,611	+		GFF4750	0.66	-1.1
4,750,619	-		GFF4750	0.67	+0.0
4,750,619	-		GFF4750	0.67	+1.8
4,750,619	-		GFF4750	0.67	-0.7
4,750,619	-		GFF4750	0.67	+0.1
4,750,620	-		GFF4750	0.67	-0.3
4,750,626	-		GFF4750	0.67	+0.0
4,750,636	-		GFF4750	0.68	-0.9
4,750,636	-		GFF4750	0.68	-1.2
4,750,637	+		GFF4750	0.68	+1.0
4,750,664	+		GFF4750	0.70	+0.1
4,750,664	+		GFF4750	0.70	+0.7
4,750,672	-		GFF4750	0.71	+0.2
4,750,672	-		GFF4750	0.71	-0.7