Strain Fitness in Sphingobium sp. HT1-2 around GFF4616

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,609,976	-		GFF4615	0.14	+0.7
4,609,976	-		GFF4615	0.14	-0.6
4,609,976	-		GFF4615	0.14	-0.4
4,609,981	+		GFF4615	0.15	-0.4
4,610,000	+		GFF4615	0.16	-1.1
4,610,000	+		GFF4615	0.16	+0.2
4,610,008	-		GFF4615	0.17	-0.6
4,610,017	+		GFF4615	0.18	-1.6
4,610,037	+		GFF4615	0.20	+1.1
4,610,075	+		GFF4615	0.23	+0.6
4,610,112	+		GFF4615	0.26	+0.3
4,610,112	+		GFF4615	0.26	+0.3
4,610,112	+		GFF4615	0.26	-0.6
4,610,112	+		GFF4615	0.26	-0.8
4,610,112	+		GFF4615	0.26	+1.5
4,610,112	+		GFF4615	0.26	+0.5
4,610,112	+		GFF4615	0.26	-0.7
4,610,112	+		GFF4615	0.26	-0.9
4,610,117	+		GFF4615	0.27	-1.2
4,610,120	-		GFF4615	0.27	-0.7
4,610,120	-		GFF4615	0.27	-1.1
4,610,120	-		GFF4615	0.27	-2.5
4,610,120	-		GFF4615	0.27	-1.7
4,610,120	-		GFF4615	0.27	-1.6
4,610,120	-		GFF4615	0.27	-2.9
4,610,122	+		GFF4615	0.27	-0.3
4,610,122	+		GFF4615	0.27	+0.6
4,610,122	+		GFF4615	0.27	+0.6
4,610,122	+		GFF4615	0.27	-1.2
4,610,122	+		GFF4615	0.27	-0.3
4,610,122	+		GFF4615	0.27	-1.1
4,610,130	-		GFF4615	0.28	+1.1
4,610,136	-		GFF4615	0.28	-0.3
4,610,166	+		GFF4615	0.31	-1.1
4,610,193	+		GFF4615	0.33	+0.5
4,610,193	+		GFF4615	0.33	+0.0
4,610,200	-		GFF4615	0.34	-1.5
4,610,203	+		GFF4615	0.34	-0.2
4,610,220	+		GFF4615	0.36	-0.8
4,610,237	+		GFF4615	0.37	-1.8
4,610,252	+		GFF4615	0.38	+0.2
4,610,252	+		GFF4615	0.38	-0.3
4,610,260	-		GFF4615	0.39	+0.8
4,610,260	-		GFF4615	0.39	-1.1
4,610,280	-		GFF4615	0.41	-1.2
4,610,280	-		GFF4615	0.41	-0.6
4,610,291	-		GFF4615	0.42	+0.7
4,610,293	+		GFF4615	0.42	-0.5
4,610,293	+		GFF4615	0.42	-0.6
4,610,293	+		GFF4615	0.42	-0.8
4,610,301	-		GFF4615	0.43	-0.1
4,610,301	-		GFF4615	0.43	+0.5
4,610,301	-		GFF4615	0.43	+0.4
4,610,301	-		GFF4615	0.43	-0.5
4,610,319	+		GFF4615	0.44	-0.2
4,610,321	+		GFF4615	0.44	+0.2
4,610,321	+		GFF4615	0.44	-0.6
4,610,329	-		GFF4615	0.45	+0.6
4,610,329	-		GFF4615	0.45	-0.4
4,610,365	-		GFF4615	0.48	+0.2
4,610,382	-		GFF4615	0.50	+1.2
4,610,387	-		GFF4615	0.50	-1.5
4,610,419	-		GFF4615	0.53	-2.0
4,610,421	-		GFF4615	0.53	-1.4
4,610,426	-		GFF4615	0.53	-0.7
4,610,430	+		GFF4615	0.54	+0.6
4,610,430	+		GFF4615	0.54	-1.5
4,610,435	+		GFF4615	0.54	+0.7
4,610,438	-		GFF4615	0.54	-2.0
4,610,438	-		GFF4615	0.54	-0.5
4,610,442	-		GFF4615	0.55	+0.1
4,610,443	-		GFF4615	0.55	-1.7
4,610,447	+		GFF4615	0.55	-0.0
4,610,447	+		GFF4615	0.55	-0.8
4,610,454	+		GFF4615	0.56	-1.5
4,610,455	-		GFF4615	0.56	-0.0
4,610,455	-		GFF4615	0.56	+0.1
4,610,462	-		GFF4615	0.57	-0.8
4,610,462	-		GFF4615	0.57	-2.5
4,610,497	+		GFF4615	0.60	-0.8
4,610,512	-		GFF4615	0.61	-1.5
4,610,513	+		GFF4615	0.61	-0.6
4,610,513	+		GFF4615	0.61	-0.1
4,610,513	+		GFF4615	0.61	-0.5
4,610,513	+		GFF4615	0.61	-0.7
4,610,513	+		GFF4615	0.61	+0.4
4,610,513	+		GFF4615	0.61	-1.9
4,610,513	+		GFF4615	0.61	+0.5
4,610,513	+		GFF4615	0.61	-0.4
4,610,513	+		GFF4615	0.61	+0.3
4,610,513	+		GFF4615	0.61	+0.6
4,610,513	+		GFF4615	0.61	-0.5
4,610,518	+		GFF4615	0.61	+0.4
4,610,518	+		GFF4615	0.61	+0.9
4,610,518	+		GFF4615	0.61	-1.6
4,610,518	+		GFF4615	0.61	-0.2
4,610,520	+		GFF4615	0.62	-1.0
4,610,521	-		GFF4615	0.62	-1.1
4,610,521	-		GFF4615	0.62	-1.7
4,610,521	-		GFF4615	0.62	-1.4
4,610,521	-		GFF4615	0.62	+0.2
4,610,521	-		GFF4615	0.62	-0.7
4,610,521	-		GFF4615	0.62	+0.2
4,610,521	-		GFF4615	0.62	-0.4
4,610,521	-		GFF4615	0.62	-1.4
4,610,521	-		GFF4615	0.62	-0.4
4,610,521	-		GFF4615	0.62	+0.6
4,610,521	-		GFF4615	0.62	-0.1
4,610,523	+		GFF4615	0.62	-0.9
4,610,525	+		GFF4615	0.62	-0.7
4,610,526	+		GFF4615	0.62	-0.1
4,610,526	-		GFF4615	0.62	+0.3
4,610,526	-		GFF4615	0.62	-0.8
4,610,526	-		GFF4615	0.62	+0.7
4,610,526	-		GFF4615	0.62	+1.1
4,610,526	-		GFF4615	0.62	+0.2
4,610,526	-		GFF4615	0.62	-1.7
4,610,526	-		GFF4615	0.62	+0.2
4,610,531	+		GFF4615	0.62	+0.1
4,610,533	-		GFF4615	0.63	-0.4
4,610,542	+		GFF4615	0.63	+0.8
4,610,573	-		GFF4615	0.66	-0.7
4,610,614	+		GFF4615	0.70	+0.1
4,610,637	+		GFF4615	0.72	+0.1
4,610,655	-		GFF4615	0.73	+0.2
4,610,665	+		GFF4615	0.74	-1.0
4,610,673	+		GFF4615	0.75	+0.7
4,610,673	+		GFF4615	0.75	-0.9
4,610,673	+		GFF4615	0.75	+0.3
4,610,673	+		GFF4615	0.75	+0.6
4,610,677	-		GFF4615	0.75	-1.0
4,610,681	-		GFF4615	0.76	-1.1
4,610,682	+		GFF4615	0.76	-1.9
4,610,701	+		GFF4615	0.77	-0.5
4,610,709	-		GFF4615	0.78	-0.2
4,610,709	-		GFF4615	0.78	+1.1
4,610,709	-		GFF4615	0.78	+1.6
4,610,709	-		GFF4615	0.78	-0.4
4,610,709	-		GFF4615	0.78	-0.7
4,610,718	+		GFF4615	0.79	-0.3
4,610,718	+		GFF4615	0.79	+1.5
4,610,718	+		GFF4615	0.79	-0.6
4,610,746	+		GFF4615	0.81	-0.2
4,610,754	-		GFF4615	0.82	+0.0
4,610,763	+		GFF4615	0.83	-1.5
4,610,767	+		GFF4615	0.83	-0.2
4,610,769	+		GFF4615	0.83	-0.3
4,610,771	-		GFF4615	0.83	+0.3
4,610,773	+		GFF4615	0.84	+0.4
4,610,775	-		GFF4615	0.84	+0.3
4,610,781	-		GFF4615	0.84	-0.6
4,610,791	+		GFF4615	0.85	-0.5
4,610,796	+		GFF4615	0.86	-0.9
4,610,796	+		GFF4615	0.86	-1.5
4,610,816	+		GFF4615	0.87	-1.5
4,610,816	+		GFF4615	0.87	-0.6
4,610,840	-		GFF4615	0.89	-0.8
4,610,842	+		GFF4615	0.89	-1.7
4,610,842	+		GFF4615	0.89	+0.2
4,610,850	-				+0.0
4,610,902	-				-0.8
4,610,916	-				-1.4
4,610,940	+				-1.7
4,610,943	-				-0.4
4,610,963	-				-0.3
4,610,975	+				-0.1
4,610,983	-				-1.0
4,611,002	+				-0.8
4,611,028	+				-0.5
4,611,063	+				+0.3
4,611,079	+				-0.0
4,611,079	+				+0.5
4,611,079	+				-1.1
4,611,085	+				-1.7
4,611,087	-				+0.2
4,611,087	-				+0.6
4,611,092	+				+0.4
4,611,100	-		GFF4616	0.11	-0.3
4,611,125	+		GFF4616	0.13	+0.1
4,611,134	+		GFF4616	0.13	-0.9
4,611,144	+		GFF4616	0.14	-0.2
4,611,158	+		GFF4616	0.15	-1.6
4,611,167	-		GFF4616	0.16	-0.6
4,611,195	+		GFF4616	0.19	+0.2
4,611,198	-		GFF4616	0.19	-1.1
4,611,203	-		GFF4616	0.19	-0.6
4,611,203	-		GFF4616	0.19	-0.7
4,611,208	-		GFF4616	0.20	-2.7
4,611,208	-		GFF4616	0.20	+0.5
4,611,235	-		GFF4616	0.22	-0.6
4,611,246	+		GFF4616	0.23	+0.3
4,611,321	+		GFF4616	0.29	+0.2
4,611,329	+		GFF4616	0.30	+1.3
4,611,335	+		GFF4616	0.30	-0.3
4,611,336	-		GFF4616	0.30	+0.6
4,611,345	+		GFF4616	0.31	+0.6
4,611,345	+		GFF4616	0.31	-1.6
4,611,353	-		GFF4616	0.32	-1.4
4,611,355	+		GFF4616	0.32	+0.4
4,611,362	-		GFF4616	0.33	+0.0
4,611,383	+		GFF4616	0.34	-0.7
4,611,384	+		GFF4616	0.35	-0.7
4,611,391	-		GFF4616	0.35	-1.8
4,611,391	-		GFF4616	0.35	-0.7
4,611,392	-		GFF4616	0.35	-1.0
4,611,420	+		GFF4616	0.38	+0.3
4,611,420	+		GFF4616	0.38	-1.6
4,611,428	-		GFF4616	0.38	-0.4
4,611,428	-		GFF4616	0.38	+1.0
4,611,428	-		GFF4616	0.38	-1.5
4,611,432	+		GFF4616	0.39	+0.6
4,611,450	-		GFF4616	0.40	-1.8
4,611,476	+		GFF4616	0.42	-0.3
4,611,516	-		GFF4616	0.46	+0.1
4,611,528	+		GFF4616	0.47	+0.5
4,611,548	+		GFF4616	0.48	-0.8
4,611,563	+		GFF4616	0.50	+0.2
4,611,576	+		GFF4616	0.51	-0.0
4,611,594	-		GFF4616	0.52	-1.2
4,611,607	-		GFF4616	0.53	+0.6
4,611,609	+		GFF4616	0.54	+0.4
4,611,627	+		GFF4616	0.55	-1.4
4,611,678	-		GFF4616	0.59	-0.5
4,611,691	+		GFF4616	0.60	-0.9
4,611,697	+		GFF4616	0.61	-0.4
4,611,748	+		GFF4616	0.65	+1.0
4,611,748	+		GFF4616	0.65	+0.2
4,611,748	+		GFF4616	0.65	-2.1
4,611,748	+		GFF4616	0.65	+0.4
4,611,756	-		GFF4616	0.66	+0.0
4,611,756	-		GFF4616	0.66	-1.0
4,611,756	-		GFF4616	0.66	+0.6
4,611,756	-		GFF4616	0.66	-0.6
4,611,757	-		GFF4616	0.66	+1.0
4,611,757	-		GFF4616	0.66	+0.5
4,611,782	+		GFF4616	0.68	-2.0
4,611,782	+		GFF4616	0.68	-0.3
4,611,782	+		GFF4616	0.68	-1.0
4,611,790	-		GFF4616	0.69	-1.5
4,611,816	+		GFF4616	0.71	-0.2
4,611,841	+		GFF4616	0.73	-0.9
4,611,841	+		GFF4616	0.73	-0.7
4,611,841	+		GFF4616	0.73	-2.3
4,611,841	+		GFF4616	0.73	-1.2
4,611,841	+		GFF4616	0.73	-1.4
4,611,841	+		GFF4616	0.73	+1.2
4,611,841	+		GFF4616	0.73	-1.6
4,611,841	+		GFF4616	0.73	-0.0
4,611,849	-		GFF4616	0.74	-0.1
4,611,849	-		GFF4616	0.74	-0.7
4,611,849	-		GFF4616	0.74	-0.9
4,611,849	-		GFF4616	0.74	-1.6
4,611,849	-		GFF4616	0.74	-0.3
4,611,875	+		GFF4616	0.76	+0.1
4,611,875	+		GFF4616	0.76	-0.0
4,611,880	+		GFF4616	0.76	-1.1
4,611,888	-		GFF4616	0.77	-1.3
4,611,888	-		GFF4616	0.77	-1.1
4,611,906	+		GFF4616	0.79	+0.4
4,611,914	-		GFF4616	0.79	-1.9
4,611,914	-		GFF4616	0.79	+0.1
4,611,916	+		GFF4616	0.79	+1.6
4,611,916	+		GFF4616	0.79	-2.1
4,611,916	+		GFF4616	0.79	-1.6
4,611,924	-		GFF4616	0.80	+0.1
4,611,926	+		GFF4616	0.80	-2.0
4,611,930	-		GFF4616	0.81	-0.4
4,611,954	-		GFF4616	0.83	-0.4
4,611,965	+		GFF4616	0.84	-0.9
4,611,965	-		GFF4616	0.84	+0.8
4,611,973	-		GFF4616	0.84	-1.3
4,611,995	-		GFF4616	0.86	+0.5
4,611,996	-		GFF4616	0.86	-0.7
4,612,002	-		GFF4616	0.87	-2.6
4,612,053	+				-0.4
4,612,061	-				-2.4
4,612,073	+				-0.7
4,612,101	+				+0.6
4,612,124	+				-1.0
4,612,132	-				-0.2
4,612,154	+				-2.9
4,612,168	+				-0.8
4,612,265	+		GFF4617	0.11	-0.8
4,612,273	-		GFF4617	0.12	-0.7
4,612,275	+		GFF4617	0.12	+0.2
4,612,275	-		GFF4617	0.12	-0.3
4,612,296	-		GFF4617	0.15	-0.7
4,612,334	+		GFF4617	0.20	-1.0
4,612,367	-		GFF4617	0.24	+0.1
4,612,409	-		GFF4617	0.30	-2.1
4,612,430	-		GFF4617	0.33	+0.3
4,612,430	-		GFF4617	0.33	+0.8
4,612,430	-		GFF4617	0.33	+0.8
4,612,430	-		GFF4617	0.33	-0.6
4,612,442	+		GFF4617	0.34	+0.2
4,612,446	-		GFF4617	0.35	+0.4
4,612,448	+		GFF4617	0.35	-0.2
4,612,465	-		GFF4617	0.37	-1.4
4,612,498	-		GFF4617	0.41	-0.9
4,612,513	+		GFF4617	0.43	-1.5
4,612,513	+		GFF4617	0.43	-0.2
4,612,521	-		GFF4617	0.44	+1.0
4,612,531	-		GFF4617	0.46	-1.1
4,612,531	-		GFF4617	0.46	-1.2
4,612,531	-		GFF4617	0.46	-0.2
4,612,561	+		GFF4617	0.50	+0.5
4,612,567	-		GFF4617	0.51	-1.6
4,612,580	+		GFF4617	0.52	-2.1
4,612,580	+		GFF4617	0.52	-0.9
4,612,586	-		GFF4617	0.53	+0.3
4,612,588	-		GFF4617	0.53	-0.9
4,612,610	-		GFF4617	0.56	-2.0
4,612,612	-		GFF4617	0.56	-1.0
4,612,670	+		GFF4617	0.64	-2.0
4,612,672	-		GFF4617	0.64	+0.7
4,612,684	+		GFF4617	0.66	-0.6
4,612,684	+		GFF4617	0.66	-1.2
4,612,684	+		GFF4617	0.66	+0.1
4,612,684	+		GFF4617	0.66	-0.3
4,612,692	-		GFF4617	0.67	-0.4
4,612,692	-		GFF4617	0.67	-0.2
4,612,692	-		GFF4617	0.67	-0.0
4,612,692	-		GFF4617	0.67	+1.0
4,612,708	+		GFF4617	0.69	+0.8
4,612,758	-		GFF4617	0.76	-0.1
4,612,778	-		GFF4617	0.78	+0.4
4,612,781	+		GFF4617	0.79	+1.3
4,612,783	-		GFF4617	0.79	+1.4
4,612,824	-		GFF4617	0.84	-0.4
4,612,826	-		GFF4617	0.85	+0.0
4,612,829	-		GFF4617	0.85	+0.8
4,612,843	-		GFF4617	0.87	-0.6
4,612,852	+		GFF4617	0.88	+1.3
4,612,857	-		GFF4617	0.89	+0.4
4,612,890	-				-1.7
4,612,921	-				-0.8
4,612,925	+				-0.6
4,612,932	+				+0.4
4,612,937	+				-0.6
4,612,937	+				-0.1
4,612,945	-				-1.5
4,612,945	-				+0.0
4,612,945	-				+0.6
4,612,945	-				-0.9
4,612,949	+				-0.1
4,612,967	+				+0.2
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