Strain Fitness in Sphingobium sp. HT1-2 around GFF4554

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,543,687	+		GFF4552	0.88	-0.2
4,543,695	-		GFF4552	0.89	+1.5
4,543,695	-		GFF4552	0.89	+0.1
4,543,699	-		GFF4552	0.89	-2.1
4,543,726	-				-0.1
4,543,751	-				+0.5
4,543,783	+				-1.4
4,543,785	+				-0.3
4,543,789	-				+0.7
4,543,793	-				-0.0
4,543,810	-				-1.0
4,543,823	+				-1.7
4,543,829	-				+0.1
4,543,831	-				-0.3
4,543,831	-				-1.6
4,543,831	-				-1.1
4,543,897	+				-0.5
4,543,897	+				+0.5
4,543,897	+				-0.7
4,543,897	+				+0.0
4,543,897	+				-0.6
4,543,897	+				+1.8
4,543,897	+				-0.1
4,543,897	+				+1.2
4,543,897	+				-0.3
4,543,900	-				+0.0
4,543,905	-				+0.4
4,543,905	-				-0.3
4,543,905	-				+0.3
4,543,905	-				-0.6
4,543,905	-				-0.4
4,543,908	+				-0.1
4,543,921	-				-0.3
4,543,946	-				-0.4
4,543,999	+		GFF4553	0.17	-0.5
4,544,005	+		GFF4553	0.18	+0.2
4,544,016	+		GFF4553	0.20	-1.1
4,544,041	+		GFF4553	0.23	+0.3
4,544,043	+		GFF4553	0.23	+1.2
4,544,043	+		GFF4553	0.23	-0.6
4,544,048	+		GFF4553	0.24	-1.2
4,544,048	+		GFF4553	0.24	-1.3
4,544,048	+		GFF4553	0.24	-0.2
4,544,048	+		GFF4553	0.24	-2.2
4,544,048	+		GFF4553	0.24	-1.3
4,544,048	+		GFF4553	0.24	-1.5
4,544,048	+		GFF4553	0.24	-3.0
4,544,048	+		GFF4553	0.24	-0.3
4,544,050	-		GFF4553	0.24	+0.0
4,544,056	-		GFF4553	0.25	-1.2
4,544,056	-		GFF4553	0.25	+0.5
4,544,056	-		GFF4553	0.25	-0.5
4,544,056	-		GFF4553	0.25	+0.7
4,544,056	-		GFF4553	0.25	+0.0
4,544,056	-		GFF4553	0.25	-1.2
4,544,056	-		GFF4553	0.25	+0.1
4,544,056	-		GFF4553	0.25	-1.2
4,544,056	-		GFF4553	0.25	+0.3
4,544,069	+		GFF4553	0.27	-1.5
4,544,084	-		GFF4553	0.29	+1.1
4,544,092	-		GFF4553	0.30	-1.7
4,544,097	-		GFF4553	0.31	-0.1
4,544,099	+		GFF4553	0.31	+0.5
4,544,104	+		GFF4553	0.32	-0.3
4,544,107	-		GFF4553	0.32	-1.1
4,544,107	-		GFF4553	0.32	+1.2
4,544,112	+		GFF4553	0.33	+0.9
4,544,120	-		GFF4553	0.34	+0.2
4,544,139	-		GFF4553	0.37	-0.9
4,544,145	-		GFF4553	0.37	+1.2
4,544,154	-		GFF4553	0.39	-1.7
4,544,156	+		GFF4553	0.39	-0.4
4,544,156	+		GFF4553	0.39	+0.6
4,544,164	-		GFF4553	0.40	-0.3
4,544,164	-		GFF4553	0.40	+1.3
4,544,164	-		GFF4553	0.40	-0.8
4,544,164	-		GFF4553	0.40	-1.6
4,544,164	-		GFF4553	0.40	+0.8
4,544,164	-		GFF4553	0.40	-1.7
4,544,191	+		GFF4553	0.44	-1.5
4,544,199	-		GFF4553	0.45	+0.4
4,544,199	-		GFF4553	0.45	-0.7
4,544,248	+		GFF4553	0.52	+0.1
4,544,272	-		GFF4553	0.55	+0.1
4,544,296	-		GFF4553	0.58	-1.7
4,544,369	+		GFF4553	0.68	-0.0
4,544,400	+		GFF4553	0.72	+0.2
4,544,434	+		GFF4553	0.77	+0.2
4,544,436	+		GFF4553	0.77	+0.9
4,544,436	+		GFF4553	0.77	+0.4
4,544,436	+		GFF4553	0.77	-1.6
4,544,441	+		GFF4553	0.78	-1.9
4,544,443	+		GFF4553	0.78	-0.1
4,544,443	-		GFF4553	0.78	-0.4
4,544,444	-		GFF4553	0.79	+1.0
4,544,444	-		GFF4553	0.79	-1.3
4,544,444	-		GFF4553	0.79	-1.4
4,544,444	-		GFF4553	0.79	-0.5
4,544,444	-		GFF4553	0.79	-1.2
4,544,444	-		GFF4553	0.79	-0.5
4,544,444	-		GFF4553	0.79	-1.8
4,544,444	-		GFF4553	0.79	+1.3
4,544,446	+		GFF4553	0.79	+0.4
4,544,458	+		GFF4553	0.80	+0.8
4,544,506	+		GFF4553	0.87	+0.6
4,544,506	+		GFF4553	0.87	-0.8
4,544,506	+		GFF4553	0.87	+1.0
4,544,506	+		GFF4553	0.87	-0.7
4,544,514	-		GFF4553	0.88	-0.0
4,544,514	-		GFF4553	0.88	-0.5
4,544,514	-		GFF4553	0.88	-1.1
4,544,519	-		GFF4553	0.89	+1.1
4,544,538	-				-1.1
4,544,548	-				+0.7
4,544,553	-				+0.1
4,544,585	+				-1.7
4,544,585	+				-1.5
4,544,662	+				+0.0
4,544,662	+				-2.5
4,544,662	+				+0.3
4,544,662	+				-0.2
4,544,662	+				-0.9
4,544,662	+				-0.9
4,544,662	+				-1.6
4,544,662	+				-2.1
4,544,670	-				+0.4
4,544,670	-				+0.2
4,544,670	-				-0.6
4,544,670	-				-1.0
4,544,672	-				-0.7
4,544,692	+				-1.5
4,544,695	+				+2.0
4,544,696	-				+0.4
4,544,700	+				+0.4
4,544,700	+				-0.8
4,544,700	+				-0.7
4,544,708	-				-0.8
4,544,713	-				-1.9
4,544,713	-				+0.7
4,544,723	-				+0.5
4,544,726	-				-1.4
4,544,735	+				-2.5
4,544,737	+				-0.8
4,544,737	+				-0.0
4,544,737	+				-0.8
4,544,743	-				+0.3
4,544,745	+				-1.0
4,544,753	-				-0.4
4,544,784	+				-0.7
4,544,809	+				+0.0
4,544,809	+				-0.3
4,544,819	+				+0.5
4,544,819	+				-0.3
4,544,819	+				-0.9
4,544,819	+				-1.5
4,544,819	+				+1.4
4,544,827	-				-1.2
4,544,827	-				+0.6
4,544,827	-				-0.0
4,544,827	-				+0.2
4,544,888	-		GFF4554	0.14	-1.2
4,544,899	+		GFF4554	0.14	+0.2
4,544,899	+		GFF4554	0.14	-1.4
4,544,899	+		GFF4554	0.14	+0.7
4,544,907	-		GFF4554	0.15	+0.2
4,544,907	-		GFF4554	0.15	-0.5
4,544,907	-		GFF4554	0.15	-0.4
4,544,918	+		GFF4554	0.16	-0.6
4,544,939	+		GFF4554	0.17	-1.1
4,544,947	-		GFF4554	0.17	+0.3
4,544,947	-		GFF4554	0.17	-1.4
4,544,970	-		GFF4554	0.19	-1.5
4,545,000	+		GFF4554	0.21	-1.1
4,545,000	+		GFF4554	0.21	+0.0
4,545,000	+		GFF4554	0.21	-1.3
4,545,000	+		GFF4554	0.21	+0.6
4,545,008	-		GFF4554	0.21	+0.0
4,545,008	-		GFF4554	0.21	-1.4
4,545,008	-		GFF4554	0.21	+1.6
4,545,008	-		GFF4554	0.21	-1.4
4,545,008	-		GFF4554	0.21	-0.2
4,545,017	+		GFF4554	0.22	-0.9
4,545,022	+		GFF4554	0.22	+0.8
4,545,025	-		GFF4554	0.23	+0.4
4,545,027	+		GFF4554	0.23	-1.5
4,545,027	+		GFF4554	0.23	+0.0
4,545,027	-		GFF4554	0.23	-0.2
4,545,030	-		GFF4554	0.23	-0.5
4,545,032	+		GFF4554	0.23	-1.4
4,545,039	-		GFF4554	0.23	+0.5
4,545,043	+		GFF4554	0.24	+0.3
4,545,077	+		GFF4554	0.26	-1.4
4,545,077	+		GFF4554	0.26	+0.7
4,545,077	+		GFF4554	0.26	-1.7
4,545,077	+		GFF4554	0.26	-1.7
4,545,085	-		GFF4554	0.26	-0.1
4,545,085	-		GFF4554	0.26	-2.1
4,545,085	-		GFF4554	0.26	+0.7
4,545,110	+		GFF4554	0.28	-0.8
4,545,110	+		GFF4554	0.28	+0.4
4,545,135	-		GFF4554	0.30	+0.5
4,545,135	-		GFF4554	0.30	-0.2
4,545,135	-		GFF4554	0.30	+0.3
4,545,137	-		GFF4554	0.30	-1.4
4,545,151	+		GFF4554	0.31	-1.7
4,545,178	-		GFF4554	0.33	-0.0
4,545,179	+		GFF4554	0.33	-0.1
4,545,187	-		GFF4554	0.33	-1.0
4,545,194	+		GFF4554	0.34	+0.2
4,545,234	+		GFF4554	0.36	+0.8
4,545,236	+		GFF4554	0.36	+0.4
4,545,255	+		GFF4554	0.38	-0.2
4,545,269	+		GFF4554	0.38	+0.4
4,545,277	-		GFF4554	0.39	-0.4
4,545,291	-		GFF4554	0.40	-0.1
4,545,291	-		GFF4554	0.40	-0.2
4,545,295	+		GFF4554	0.40	-0.1
4,545,295	+		GFF4554	0.40	-0.6
4,545,303	-		GFF4554	0.41	-0.3
4,545,303	-		GFF4554	0.41	-1.0
4,545,303	-		GFF4554	0.41	-1.1
4,545,313	-		GFF4554	0.41	-0.5
4,545,318	-		GFF4554	0.42	-2.4
4,545,320	+		GFF4554	0.42	+0.3
4,545,320	+		GFF4554	0.42	-0.6
4,545,328	-		GFF4554	0.42	-0.8
4,545,328	-		GFF4554	0.42	-0.3
4,545,328	-		GFF4554	0.42	-0.4
4,545,328	-		GFF4554	0.42	-0.7
4,545,328	-		GFF4554	0.42	-1.1
4,545,328	-		GFF4554	0.42	-1.0
4,545,353	-		GFF4554	0.44	-0.7
4,545,386	-		GFF4554	0.46	-1.2
4,545,387	+		GFF4554	0.46	+0.5
4,545,405	+		GFF4554	0.47	-0.9
4,545,413	-		GFF4554	0.48	-2.0
4,545,419	+		GFF4554	0.48	-0.8
4,545,427	+		GFF4554	0.49	-0.0
4,545,427	-		GFF4554	0.49	-0.8
4,545,458	+		GFF4554	0.51	-1.1
4,545,463	+		GFF4554	0.51	+1.5
4,545,463	+		GFF4554	0.51	-0.6
4,545,463	+		GFF4554	0.51	-1.4
4,545,468	+		GFF4554	0.51	-2.9
4,545,469	+		GFF4554	0.52	-3.2
4,545,469	+		GFF4554	0.52	-0.8
4,545,470	+		GFF4554	0.52	+0.3
4,545,470	+		GFF4554	0.52	-0.8
4,545,471	-		GFF4554	0.52	-0.8
4,545,471	-		GFF4554	0.52	-0.1
4,545,475	+		GFF4554	0.52	-1.9
4,545,483	-		GFF4554	0.52	+0.2
4,545,511	-		GFF4554	0.54	-0.2
4,545,511	-		GFF4554	0.54	+0.5
4,545,521	+		GFF4554	0.55	-0.3
4,545,525	+		GFF4554	0.55	-1.0
4,545,529	-		GFF4554	0.55	-0.1
4,545,543	+		GFF4554	0.56	-0.0
4,545,548	+		GFF4554	0.57	+0.2
4,545,551	-		GFF4554	0.57	-0.9
4,545,556	-		GFF4554	0.57	-0.1
4,545,565	+		GFF4554	0.58	-0.3
4,545,587	-		GFF4554	0.59	+0.1
4,545,589	+		GFF4554	0.59	-0.9
4,545,589	+		GFF4554	0.59	-1.3
4,545,589	+		GFF4554	0.59	+0.5
4,545,589	+		GFF4554	0.59	-0.6
4,545,631	+		GFF4554	0.62	+0.6
4,545,631	+		GFF4554	0.62	-1.9
4,545,638	-		GFF4554	0.63	-0.1
4,545,639	-		GFF4554	0.63	+0.8
4,545,639	-		GFF4554	0.63	+0.3
4,545,639	-		GFF4554	0.63	+0.1
4,545,639	-		GFF4554	0.63	+1.3
4,545,639	-		GFF4554	0.63	-0.2
4,545,639	-		GFF4554	0.63	+0.6
4,545,655	+		GFF4554	0.64	-1.8
4,545,660	+		GFF4554	0.64	-0.1
4,545,660	+		GFF4554	0.64	-0.9
4,545,660	+		GFF4554	0.64	-0.1
4,545,660	+		GFF4554	0.64	-1.4
4,545,660	+		GFF4554	0.64	-2.0
4,545,660	+		GFF4554	0.64	-1.0
4,545,660	+		GFF4554	0.64	-1.3
4,545,663	-		GFF4554	0.64	-0.0
4,545,665	+		GFF4554	0.64	+0.9
4,545,668	-		GFF4554	0.65	+0.4
4,545,668	-		GFF4554	0.65	-2.7
4,545,668	-		GFF4554	0.65	-0.8
4,545,668	-		GFF4554	0.65	+1.6
4,545,668	-		GFF4554	0.65	+0.9
4,545,668	-		GFF4554	0.65	-1.1
4,545,668	-		GFF4554	0.65	-1.5
4,545,673	-		GFF4554	0.65	+0.1
4,545,673	-		GFF4554	0.65	-2.1
4,545,673	-		GFF4554	0.65	-1.5
4,545,673	-		GFF4554	0.65	-0.7
4,545,673	-		GFF4554	0.65	-1.0
4,545,673	-		GFF4554	0.65	-1.0
4,545,673	-		GFF4554	0.65	+0.5
4,545,695	+		GFF4554	0.66	-1.8
4,545,703	-		GFF4554	0.67	-1.1
4,545,732	+		GFF4554	0.69	-1.1
4,545,732	+		GFF4554	0.69	+0.6
4,545,733	-		GFF4554	0.69	-0.5
4,545,733	-		GFF4554	0.69	+1.1
4,545,756	-		GFF4554	0.70	-0.4
4,545,762	-		GFF4554	0.71	-0.4
4,545,773	+		GFF4554	0.71	-0.6
4,545,781	-		GFF4554	0.72	-0.4
4,545,790	-		GFF4554	0.72	-1.1
4,545,790	-		GFF4554	0.72	-1.2
4,545,812	+		GFF4554	0.74	-0.4
4,545,846	-		GFF4554	0.76	+0.9
4,545,850	+		GFF4554	0.76	-0.4
4,545,855	+		GFF4554	0.77	-0.4
4,545,855	+		GFF4554	0.77	+0.4
4,545,861	+		GFF4554	0.77	+0.1
4,545,870	-		GFF4554	0.78	+0.2
4,545,886	+		GFF4554	0.79	+0.2
4,545,905	+		GFF4554	0.80	+0.0
4,545,908	-		GFF4554	0.80	-1.7
4,545,929	-		GFF4554	0.82	-0.0
4,545,935	+		GFF4554	0.82	-3.1
4,545,935	+		GFF4554	0.82	-0.1
4,545,936	+		GFF4554	0.82	-0.5
4,545,943	-		GFF4554	0.82	-0.7
4,545,943	-		GFF4554	0.82	-0.8
4,545,973	+		GFF4554	0.84	-0.8
4,545,973	+		GFF4554	0.84	+0.0
4,545,997	+		GFF4554	0.86	-0.0
4,546,000	-		GFF4554	0.86	-2.1
4,546,014	+		GFF4554	0.87	-0.3
4,546,014	+		GFF4554	0.87	-1.7
4,546,019	+		GFF4554	0.87	+0.1
4,546,019	+		GFF4554	0.87	-0.5
4,546,027	-		GFF4554	0.88	+1.1
4,546,027	-		GFF4554	0.88	-1.6
4,546,027	-		GFF4554	0.88	-1.4
4,546,027	-		GFF4554	0.88	+1.7
4,546,027	-		GFF4554	0.88	-0.6
4,546,027	-		GFF4554	0.88	+1.8
4,546,103	-				+0.7
4,546,137	+				-0.3
4,546,140	+				-0.1
4,546,140	+				+0.2
4,546,145	-				+0.3
4,546,147	+				-0.8
4,546,148	-				-0.6
4,546,158	+				-0.1
4,546,166	-				+0.2
4,546,213	+				-1.4
4,546,214	-				-1.2
4,546,216	-				+0.4
4,546,221	+				-0.1
4,546,247	+				-2.0
4,546,247	+				-1.0
4,546,255	-				-0.6
4,546,255	-				+1.2
4,546,271	+				+0.2
4,546,271	+				-1.9
4,546,279	-				-0.6
4,546,281	+				-0.1
4,546,298	-				+0.8
4,546,309	+				-0.5
4,546,343	+				+0.3
4,546,344	-				-0.4
4,546,361	+				-0.9
4,546,367	-		GFF4555	0.10	-0.2
4,546,369	-		GFF4555	0.10	+0.6
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