Strain Fitness in Sphingobium sp. HT1-2 around GFF4507

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,500,018	+				+0.6
4,500,020	+				+0.4
4,500,022	-				-0.6
4,500,022	-				-1.1
4,500,022	-				+0.8
4,500,030	-				-0.3
4,500,032	+				+0.1
4,500,067	+				-1.7
4,500,067	+				-0.3
4,500,087	+				+0.6
4,500,087	+				+0.4
4,500,087	+				-0.4
4,500,095	-				-0.5
4,500,095	-				+0.4
4,500,095	-				-0.2
4,500,134	-		GFF4505	0.12	+0.7
4,500,144	-		GFF4505	0.15	-0.1
4,500,147	+		GFF4505	0.16	+0.0
4,500,154	-		GFF4505	0.18	-0.4
4,500,162	+		GFF4505	0.21	+0.3
4,500,168	-		GFF4505	0.23	-0.2
4,500,207	-		GFF4505	0.35	+0.1
4,500,208	-		GFF4505	0.36	-0.1
4,500,214	-		GFF4505	0.38	+0.1
4,500,234	+		GFF4505	0.44	+0.0
4,500,248	+		GFF4505	0.48	+0.3
4,500,248	+		GFF4505	0.48	-1.0
4,500,248	+		GFF4505	0.48	+0.4
4,500,266	+		GFF4505	0.54	-0.6
4,500,269	-		GFF4505	0.55	-1.6
4,500,276	+		GFF4505	0.57	+1.0
4,500,286	-		GFF4505	0.61	+0.4
4,500,288	+		GFF4505	0.61	+1.4
4,500,298	+		GFF4505	0.64	-0.7
4,500,334	+		GFF4505	0.76	+0.5
4,500,336	+		GFF4505	0.77	+0.9
4,500,342	-		GFF4505	0.79	-1.1
4,500,346	+		GFF4505	0.80	+1.0
4,500,356	+		GFF4505	0.83	-0.3
4,500,356	-		GFF4505	0.83	-0.4
4,500,360	+		GFF4505	0.84	+0.0
4,500,360	+		GFF4505	0.84	-0.8
4,500,360	+		GFF4505	0.84	+1.2
4,500,360	+		GFF4505	0.84	-0.5
4,500,360	+		GFF4505	0.84	+0.3
4,500,360	+		GFF4505	0.84	-0.7
4,500,360	+		GFF4505	0.84	-1.1
4,500,360	+		GFF4505	0.84	+0.4
4,500,360	+		GFF4505	0.84	+0.6
4,500,360	+		GFF4505	0.84	+0.3
4,500,360	+		GFF4505	0.84	-0.3
4,500,360	+		GFF4505	0.84	-0.6
4,500,360	+		GFF4505	0.84	-0.7
4,500,360	+		GFF4505	0.84	-0.1
4,500,360	+		GFF4505	0.84	+0.2
4,500,360	+		GFF4505	0.84	+0.1
4,500,360	+		GFF4505	0.84	-0.8
4,500,360	+		GFF4505	0.84	-0.1
4,500,360	+		GFF4505	0.84	-0.1
4,500,360	+		GFF4505	0.84	-0.4
4,500,360	+		GFF4505	0.84	-0.0
4,500,360	+		GFF4505	0.84	-0.4
4,500,360	+		GFF4505	0.84	-0.5
4,500,360	+		GFF4505	0.84	-0.2
4,500,360	+		GFF4505	0.84	-2.5
4,500,360	+		GFF4505	0.84	-3.0
4,500,360	+		GFF4505	0.84	+0.4
4,500,360	+		GFF4505	0.84	+0.7
4,500,363	-		GFF4505	0.85	+0.4
4,500,364	-		GFF4505	0.86	-0.6
4,500,368	-		GFF4505	0.87	+0.2
4,500,368	-		GFF4505	0.87	-0.1
4,500,368	-		GFF4505	0.87	+0.7
4,500,368	-		GFF4505	0.87	-0.8
4,500,368	-		GFF4505	0.87	-0.4
4,500,368	-		GFF4505	0.87	-0.2
4,500,368	-		GFF4505	0.87	+0.3
4,500,368	-		GFF4505	0.87	+0.1
4,500,368	-		GFF4505	0.87	+0.4
4,500,368	-		GFF4505	0.87	-0.6
4,500,368	-		GFF4505	0.87	-1.9
4,500,368	-		GFF4505	0.87	-0.7
4,500,368	-		GFF4505	0.87	+1.1
4,500,368	-		GFF4505	0.87	-1.4
4,500,368	-		GFF4505	0.87	+0.9
4,500,368	-		GFF4505	0.87	+0.1
4,500,368	-		GFF4505	0.87	+0.8
4,500,368	-		GFF4505	0.87	-0.5
4,500,368	-		GFF4505	0.87	+0.8
4,500,368	-		GFF4505	0.87	-2.1
4,500,368	-		GFF4505	0.87	+1.4
4,500,368	-		GFF4505	0.87	-0.6
4,500,368	-		GFF4505	0.87	+0.0
4,500,368	-		GFF4505	0.87	+0.8
4,500,368	-		GFF4505	0.87	+0.2
4,500,368	-		GFF4505	0.87	+0.9
4,500,394	+				-0.1
4,500,411	-				-1.0
4,500,433	-				+1.8
4,500,446	+				-1.0
4,500,448	+				-0.0
4,500,448	+				+0.2
4,500,469	+				+0.0
4,500,469	+				+0.4
4,500,471	+				+0.4
4,500,471	-				-0.9
4,500,471	-				+0.5
4,500,471	-				+1.3
4,500,477	-				-0.1
4,500,477	-				-0.4
4,500,477	-				-0.3
4,500,484	+				+0.1
4,500,484	+				+1.2
4,500,484	+				-0.5
4,500,487	-				+0.2
4,500,492	-				+0.1
4,500,492	-				+0.2
4,500,515	+				-2.5
4,500,515	+				+1.2
4,500,523	-		GFF4506	0.12	+0.7
4,500,523	-		GFF4506	0.12	+0.1
4,500,549	-		GFF4506	0.21	-2.0
4,500,564	-		GFF4506	0.27	-1.0
4,500,564	-		GFF4506	0.27	-1.0
4,500,564	-		GFF4506	0.27	+0.5
4,500,564	-		GFF4506	0.27	-0.7
4,500,574	+		GFF4506	0.30	-1.6
4,500,574	+		GFF4506	0.30	-1.2
4,500,586	-		GFF4506	0.34	-0.2
4,500,590	-		GFF4506	0.36	+0.2
4,500,613	-		GFF4506	0.44	+0.4
4,500,639	-		GFF4506	0.53	+1.0
4,500,654	+		GFF4506	0.59	-1.8
4,500,661	+		GFF4506	0.61	-0.9
4,500,661	+		GFF4506	0.61	+0.3
4,500,661	+		GFF4506	0.61	-0.1
4,500,661	+		GFF4506	0.61	-1.0
4,500,669	-		GFF4506	0.64	-0.6
4,500,669	-		GFF4506	0.64	+0.0
4,500,669	-		GFF4506	0.64	-2.4
4,500,669	-		GFF4506	0.64	-0.5
4,500,669	-		GFF4506	0.64	+0.4
4,500,673	+		GFF4506	0.66	+1.2
4,500,681	-		GFF4506	0.68	-0.1
4,500,718	+		GFF4506	0.82	-0.9
4,500,723	+		GFF4506	0.84	-0.2
4,500,726	+		GFF4506	0.85	-1.8
4,500,726	+		GFF4506	0.85	+0.4
4,500,731	-		GFF4506	0.86	+0.5
4,500,731	-		GFF4506	0.86	-0.4
4,500,739	-		GFF4506	0.89	+0.5
4,500,767	+				-0.9
4,500,769	+				-0.3
4,500,769	+				-0.5
4,500,769	+				+0.5
4,500,775	+				-0.7
4,500,775	-				+0.3
4,500,777	-				+0.7
4,500,777	-				-0.4
4,500,777	-				-1.5
4,500,782	-				+0.5
4,500,782	-				-1.3
4,500,788	-				-0.5
4,500,810	+				+0.4
4,500,810	+				-1.9
4,500,810	+				-0.0
4,500,810	+				-0.8
4,500,810	+				-1.2
4,500,810	+				-0.7
4,500,817	+				-2.1
4,500,817	-				+0.0
4,500,818	-				+0.8
4,500,818	-				-0.3
4,500,818	-				-0.0
4,500,818	-				-0.5
4,500,818	-				-1.5
4,500,825	-				+0.6
4,500,825	-				-0.3
4,500,832	+				-1.2
4,500,835	-				-1.5
4,500,841	-				-1.8
4,500,852	-				+0.2
4,500,858	+				+0.3
4,500,858	+				-1.1
4,500,858	+				+0.8
4,500,858	+				-0.1
4,500,858	+				-2.7
4,500,866	-				+0.0
4,500,866	-				+0.3
4,500,866	-				+1.0
4,500,866	-				-2.0
4,500,867	-				-0.6
4,500,867	-				-0.3
4,500,871	-				-1.4
4,500,880	+				+0.6
4,500,880	+				+0.4
4,500,881	+				-0.6
4,500,881	+				-0.0
4,500,881	+				-1.1
4,500,881	+				+0.0
4,500,888	-				+0.8
4,500,888	-				+1.4
4,500,889	-				-0.2
4,500,889	-				+0.9
4,500,889	-				-0.2
4,500,889	-				-0.4
4,500,889	-				-1.6
4,500,931	+				-0.8
4,500,971	+				-0.6
4,500,973	-				-0.3
4,500,981	+				+1.2
4,500,989	-				+0.2
4,501,019	-				-1.7
4,501,019	-				+1.2
4,501,019	-				-1.1
4,501,024	-				-0.1
4,501,028	+				+0.6
4,501,036	-				+0.3
4,501,040	-		GFF4507	0.12	-0.0
4,501,062	-		GFF4507	0.22	-1.4
4,501,062	-		GFF4507	0.22	+0.4
4,501,069	-		GFF4507	0.25	-0.2
4,501,104	+		GFF4507	0.41	-0.2
4,501,122	+		GFF4507	0.49	-2.4
4,501,161	-		GFF4507	0.66	+0.2
4,501,195	-		GFF4507	0.82	+0.5
4,501,222	+				-0.4
4,501,230	+				-0.2
4,501,238	-				+0.3
4,501,240	+				+0.1
4,501,240	+				+0.3
4,501,240	+				-1.4
4,501,252	-				+0.0
4,501,254	+				+0.7
4,501,254	+				+0.6
4,501,254	+				+0.3
4,501,254	+				-0.6
4,501,262	+				+0.3
4,501,262	+				+0.8
4,501,262	-				-0.6
4,501,262	-				-0.8
4,501,262	-				-0.6
4,501,262	-				-0.0
4,501,262	-				+0.8
4,501,270	-				-0.4
4,501,270	-				+0.6
4,501,272	+				+0.3
4,501,272	+				-0.3
4,501,275	-				+0.2
4,501,275	-				-1.4
4,501,280	-				-1.2
4,501,286	-				+0.9
4,501,314	-		GFF4508	0.26	+0.3
4,501,314	-		GFF4508	0.26	-1.8
4,501,333	+		GFF4508	0.38	+0.1
4,501,378	-		GFF4508	0.67	+0.7
4,501,407	+		GFF4508	0.85	-1.0
4,501,408	-		GFF4508	0.86	+0.5
4,501,412	+		GFF4508	0.88	-0.9
4,501,428	+				+0.4
4,501,444	+				-0.1
4,501,444	+				+0.4
4,501,449	+				+0.1
4,501,452	-				-0.6
4,501,488	-				+0.8
4,501,517	+				+0.2
4,501,525	-				-0.1
4,501,525	-				-0.2
4,501,525	-				-1.4
4,501,538	+				-0.7
4,501,546	-				-1.4
4,501,561	+				+0.7
4,501,600	+				+0.1
4,501,601	+				-2.0
4,501,608	+				-1.5
4,501,616	+				-0.4
4,501,616	+				-0.1
4,501,616	+				-0.5
4,501,616	+				-3.1
4,501,621	+				+0.4
4,501,621	+				+0.3
4,501,621	+				+0.7
4,501,621	+				-0.0
4,501,624	-				-0.1
4,501,624	-				-0.7
4,501,624	-				-0.5
4,501,624	-				+0.2
4,501,624	-				+0.1
4,501,624	-				-1.1
4,501,624	-				+0.3
4,501,626	+				+0.8
4,501,626	+				+1.4
4,501,629	-				-0.4
4,501,629	-				+0.5
4,501,629	-				-0.8
4,501,634	-				+0.7
4,501,634	-				-1.1
4,501,634	-				-0.2
4,501,634	-				-0.6
4,501,634	-				+0.5
4,501,660	+				-1.7
4,501,685	-		GFF4509	0.10	-1.1
4,501,755	+		GFF4509	0.15	-1.4
4,501,769	-		GFF4509	0.16	-0.3
4,501,770	-		GFF4509	0.16	-0.4
4,501,775	+		GFF4509	0.17	-2.1
4,501,775	+		GFF4509	0.17	+0.5
4,501,775	+		GFF4509	0.17	-1.1
4,501,783	-		GFF4509	0.17	+0.1
4,501,783	-		GFF4509	0.17	+0.5
4,501,799	-		GFF4509	0.18	+0.3
4,501,799	-		GFF4509	0.18	-0.7
4,501,802	+		GFF4509	0.19	+0.2
4,501,802	+		GFF4509	0.19	-1.0
4,501,810	-		GFF4509	0.19	+0.8
4,501,810	-		GFF4509	0.19	+0.1
4,501,810	-		GFF4509	0.19	-0.3
4,501,810	-		GFF4509	0.19	-0.4
4,501,810	-		GFF4509	0.19	-1.4
4,501,810	-		GFF4509	0.19	-0.1
4,501,810	-		GFF4509	0.19	-0.1
4,501,810	-		GFF4509	0.19	+0.0
4,501,810	-		GFF4509	0.19	-1.1
4,501,819	+		GFF4509	0.20	-1.5
4,501,827	-		GFF4509	0.20	-0.5
4,501,829	+		GFF4509	0.20	+0.2
4,501,829	+		GFF4509	0.20	+1.3
4,501,829	+		GFF4509	0.20	-1.1
4,501,832	-		GFF4509	0.21	+1.2
4,501,837	-		GFF4509	0.21	-1.7
4,501,837	-		GFF4509	0.21	+0.3
4,501,837	-		GFF4509	0.21	+0.5
4,501,837	-		GFF4509	0.21	+0.7
4,501,837	-		GFF4509	0.21	-1.2
4,501,837	-		GFF4509	0.21	+1.4
4,501,843	+		GFF4509	0.21	-0.7
4,501,844	+		GFF4509	0.21	+1.0
4,501,844	+		GFF4509	0.21	+1.0
4,501,852	-		GFF4509	0.22	+0.5
4,501,868	+		GFF4509	0.23	-0.1
4,501,875	+		GFF4509	0.24	-1.4
4,501,891	+		GFF4509	0.25	-2.2
4,501,895	+		GFF4509	0.25	-2.3
4,501,899	+		GFF4509	0.25	-1.9
4,501,903	-		GFF4509	0.26	+0.5
4,501,912	+		GFF4509	0.26	-1.2
4,501,912	+		GFF4509	0.26	+1.1
4,501,912	+		GFF4509	0.26	+0.2
4,501,912	+		GFF4509	0.26	-1.0
4,501,912	+		GFF4509	0.26	-1.5
4,501,920	-		GFF4509	0.27	-1.6
4,501,920	-		GFF4509	0.27	-0.4
4,501,920	-		GFF4509	0.27	+0.2
4,501,920	-		GFF4509	0.27	+0.4
4,501,920	-		GFF4509	0.27	-0.6
4,501,920	-		GFF4509	0.27	-0.2
4,501,953	+		GFF4509	0.29	-0.5
4,501,978	-		GFF4509	0.31	+1.0
4,502,021	+		GFF4509	0.34	-0.7
4,502,029	-		GFF4509	0.35	-0.9
4,502,036	+		GFF4509	0.35	-1.6
4,502,036	+		GFF4509	0.35	+1.1
4,502,036	+		GFF4509	0.35	-2.0
4,502,036	-		GFF4509	0.35	-0.1
4,502,042	+		GFF4509	0.35	-0.4
4,502,042	+		GFF4509	0.35	-1.9
4,502,042	+		GFF4509	0.35	-1.7
4,502,042	+		GFF4509	0.35	+0.9
4,502,042	+		GFF4509	0.35	+0.2
4,502,042	+		GFF4509	0.35	-0.8
4,502,042	+		GFF4509	0.35	-0.6
4,502,044	-		GFF4509	0.36	+0.2
4,502,044	-		GFF4509	0.36	-0.8
4,502,044	-		GFF4509	0.36	-0.4
4,502,044	-		GFF4509	0.36	-0.8
4,502,050	-		GFF4509	0.36	-0.2
4,502,076	+		GFF4509	0.38	-1.5
4,502,081	+		GFF4509	0.38	-1.0
4,502,089	-		GFF4509	0.39	+0.4
4,502,089	-		GFF4509	0.39	+0.1
4,502,089	-		GFF4509	0.39	+0.5
4,502,089	-		GFF4509	0.39	-0.8
4,502,089	-		GFF4509	0.39	+1.0
4,502,121	+		GFF4509	0.41	+0.5
4,502,121	+		GFF4509	0.41	-0.4
4,502,121	+		GFF4509	0.41	+0.6
4,502,127	+		GFF4509	0.41	+0.9
4,502,135	+		GFF4509	0.42	+0.2
4,502,135	+		GFF4509	0.42	+0.2
4,502,135	-		GFF4509	0.42	-1.7
4,502,147	+		GFF4509	0.43	-0.7
4,502,147	+		GFF4509	0.43	-0.1
4,502,147	+		GFF4509	0.43	+0.8
4,502,147	+		GFF4509	0.43	-0.8
4,502,147	+		GFF4509	0.43	-0.0
4,502,147	+		GFF4509	0.43	+0.9
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4,502,147	+		GFF4509	0.43	-1.3
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4,502,147	+		GFF4509	0.43	-2.5
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4,502,155	-		GFF4509	0.43	-1.0
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