Strain Fitness in Sphingobium sp. HT1-2 around GFF4480

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,473,154	-				+1.0
4,473,202	-				-0.7
4,473,202	-				+0.5
4,473,204	+				-0.1
4,473,204	+				-0.2
4,473,204	+				+1.3
4,473,204	+				-0.0
4,473,204	+				+0.2
4,473,232	+				+0.3
4,473,232	+				-0.4
4,473,232	+				+0.7
4,473,239	+				-0.8
4,473,239	+				-1.2
4,473,240	-				+0.4
4,473,244	+				-1.5
4,473,244	+				-1.5
4,473,247	-				-0.4
4,473,247	-				+1.8
4,473,247	-				-0.4
4,473,249	+				+0.5
4,473,249	+				-2.6
4,473,249	+				-0.8
4,473,249	+				-1.5
4,473,249	+				+1.1
4,473,252	-				-2.0
4,473,257	-				+1.6
4,473,276	-				+0.1
4,473,281	+				-0.7
4,473,281	+				+0.7
4,473,286	+				+0.6
4,473,291	+				+2.2
4,473,291	+				-0.3
4,473,299	-				+1.3
4,473,299	-				-0.0
4,473,299	-				-1.0
4,473,299	-				-0.4
4,473,348	+				-0.3
4,473,348	+				+0.9
4,473,354	-				-0.1
4,473,356	-				-0.6
4,473,356	-				+1.4
4,473,356	-				+1.4
4,473,373	+				+1.0
4,473,373	-				-0.1
4,473,380	-				+0.6
4,473,380	-				+0.4
4,473,381	-				+1.3
4,473,390	+				+0.2
4,473,390	+				-0.2
4,473,398	-				+0.9
4,473,398	-				-0.8
4,473,400	+				+0.6
4,473,400	-				+0.6
4,473,408	-				-1.5
4,473,408	-				-0.5
4,473,415	+				-1.1
4,473,423	-				+1.2
4,473,432	+				+0.4
4,473,448	+				-0.5
4,473,456	+				-1.6
4,473,456	-				+0.7
4,473,458	+				-0.9
4,473,458	+				+0.3
4,473,458	+				-0.3
4,473,458	+				-0.6
4,473,458	+				-1.1
4,473,458	+				-0.4
4,473,466	-				-1.3
4,473,466	-				-0.0
4,473,466	-				+0.7
4,473,466	-				-0.4
4,473,466	-				-0.4
4,473,471	-				+0.7
4,473,480	-				+0.6
4,473,600	-				-0.3
4,473,609	-				-0.3
4,473,637	+				+1.0
4,473,645	-				+0.2
4,473,667	+		GFF4479	0.10	+0.6
4,473,667	+		GFF4479	0.10	-0.7
4,473,675	-		GFF4479	0.12	-0.3
4,473,677	+		GFF4479	0.12	+0.0
4,473,677	+		GFF4479	0.12	-0.5
4,473,677	+		GFF4479	0.12	+0.4
4,473,682	+		GFF4479	0.14	-0.6
4,473,685	-		GFF4479	0.14	+1.2
4,473,685	-		GFF4479	0.14	-1.1
4,473,685	-		GFF4479	0.14	+0.2
4,473,685	-		GFF4479	0.14	+0.4
4,473,685	-		GFF4479	0.14	-0.6
4,473,685	-		GFF4479	0.14	+0.9
4,473,685	-		GFF4479	0.14	-0.8
4,473,685	-		GFF4479	0.14	-0.5
4,473,690	-		GFF4479	0.15	-0.7
4,473,742	+		GFF4479	0.27	-1.4
4,473,750	-		GFF4479	0.29	+0.9
4,473,758	+		GFF4479	0.31	-0.8
4,473,759	-		GFF4479	0.31	+2.0
4,473,769	-		GFF4479	0.33	+1.8
4,473,801	+		GFF4479	0.40	-0.8
4,473,819	+		GFF4479	0.44	-0.7
4,473,825	-		GFF4479	0.46	-1.1
4,473,851	-		GFF4479	0.52	+0.2
4,473,853	-		GFF4479	0.52	+0.5
4,473,920	-		GFF4479	0.67	+1.5
4,473,921	-		GFF4479	0.67	-0.1
4,473,940	+		GFF4479	0.72	+0.9
4,473,940	+		GFF4479	0.72	-0.3
4,473,940	+		GFF4479	0.72	+0.4
4,473,953	-		GFF4479	0.75	+0.6
4,473,965	-		GFF4479	0.77	-0.5
4,473,967	+		GFF4479	0.78	+0.6
4,473,970	-		GFF4479	0.78	+0.1
4,474,004	+		GFF4479	0.86	+0.2
4,474,021	+				-0.9
4,474,031	+				-1.6
4,474,031	+				-0.4
4,474,031	+				+0.4
4,474,055	-				-0.2
4,474,065	+				+0.2
4,474,097	-				-0.4
4,474,097	-				+0.2
4,474,097	-				+0.3
4,474,097	-				-0.3
4,474,101	+				+0.4
4,474,108	+				-0.9
4,474,108	+				+0.2
4,474,108	+				-2.3
4,474,108	+				+0.9
4,474,108	+				-0.6
4,474,108	+				+1.3
4,474,116	-				-0.2
4,474,116	-				-0.1
4,474,126	+				+1.3
4,474,129	-				-1.8
4,474,134	+				+0.1
4,474,144	+				-1.7
4,474,144	+				-1.6
4,474,144	+				+0.7
4,474,144	+				-0.5
4,474,144	+				-1.5
4,474,144	+				+0.1
4,474,144	+				+0.2
4,474,152	-		GFF4480	0.11	-2.7
4,474,152	-		GFF4480	0.11	+0.4
4,474,152	-		GFF4480	0.11	-0.8
4,474,155	+		GFF4480	0.12	-0.7
4,474,161	+		GFF4480	0.13	+0.1
4,474,169	-		GFF4480	0.16	-0.4
4,474,169	-		GFF4480	0.16	+0.1
4,474,178	+		GFF4480	0.18	-1.4
4,474,178	+		GFF4480	0.18	-0.7
4,474,186	-		GFF4480	0.20	-0.6
4,474,199	+		GFF4480	0.24	+0.8
4,474,199	+		GFF4480	0.24	-1.8
4,474,204	+		GFF4480	0.25	+1.6
4,474,207	-		GFF4480	0.26	-0.8
4,474,207	-		GFF4480	0.26	+0.2
4,474,212	-		GFF4480	0.27	-0.0
4,474,222	-		GFF4480	0.30	+0.2
4,474,243	-		GFF4480	0.35	+1.5
4,474,256	-		GFF4480	0.39	+0.2
4,474,281	+		GFF4480	0.46	-0.8
4,474,283	+		GFF4480	0.46	-0.0
4,474,288	+		GFF4480	0.48	-1.1
4,474,293	+		GFF4480	0.49	-0.5
4,474,296	-		GFF4480	0.50	-0.3
4,474,301	-		GFF4480	0.51	+0.8
4,474,301	-		GFF4480	0.51	+1.1
4,474,353	+		GFF4480	0.65	-0.7
4,474,358	+		GFF4480	0.66	+0.8
4,474,358	+		GFF4480	0.66	-1.0
4,474,358	+		GFF4480	0.66	-0.6
4,474,358	+		GFF4480	0.66	+1.5
4,474,366	-		GFF4480	0.69	-0.4
4,474,383	-		GFF4480	0.73	-0.7
4,474,383	-		GFF4480	0.73	-0.0
4,474,402	+		GFF4480	0.78	-0.2
4,474,407	+		GFF4480	0.80	-1.5
4,474,409	+		GFF4480	0.80	-0.2
4,474,410	-		GFF4480	0.80	+0.7
4,474,415	-		GFF4480	0.82	-0.4
4,474,415	-		GFF4480	0.82	-2.2
4,474,415	-		GFF4480	0.82	+0.8
4,474,416	-		GFF4480	0.82	-0.0
4,474,417	-		GFF4480	0.82	-0.7
4,474,419	+		GFF4480	0.83	+0.4
4,474,427	-		GFF4480	0.85	+0.5
4,474,457	-				+1.1
4,474,491	+				-0.9
4,474,494	-				+0.3
4,474,514	+				+1.2
4,474,514	+				-0.1
4,474,576	+				-0.2
4,474,587	+				-1.7
4,474,587	+				-0.1
4,474,587	+				+0.4
4,474,595	-				+0.7
4,474,652	-		GFF4481	0.17	+0.0
4,474,667	+		GFF4481	0.20	+0.7
4,474,667	+		GFF4481	0.20	-2.7
4,474,689	+		GFF4481	0.25	+0.6
4,474,689	+		GFF4481	0.25	-0.1
4,474,689	+		GFF4481	0.25	+0.0
4,474,689	+		GFF4481	0.25	-0.9
4,474,689	+		GFF4481	0.25	+0.5
4,474,697	-		GFF4481	0.27	+0.5
4,474,697	-		GFF4481	0.27	-1.4
4,474,697	-		GFF4481	0.27	-0.5
4,474,723	+		GFF4481	0.33	+0.4
4,474,728	+		GFF4481	0.34	-0.2
4,474,728	+		GFF4481	0.34	-1.2
4,474,808	-		GFF4481	0.52	+0.6
4,474,816	+		GFF4481	0.54	+0.5
4,474,840	+		GFF4481	0.59	+1.2
4,474,847	-		GFF4481	0.61	+1.2
4,474,847	-		GFF4481	0.61	-0.5
4,474,847	-		GFF4481	0.61	+0.6
4,474,847	-		GFF4481	0.61	+0.7
4,474,868	-		GFF4481	0.65	-0.5
4,474,878	-		GFF4481	0.68	+0.4
4,474,890	-		GFF4481	0.70	-1.7
4,474,894	+		GFF4481	0.71	-0.4
4,474,915	-		GFF4481	0.76	-1.4
4,474,926	-		GFF4481	0.78	+0.8
4,474,935	+		GFF4481	0.80	-0.5
4,474,951	+		GFF4481	0.84	-0.0
4,474,973	-		GFF4481	0.89	+1.0
4,475,002	-				+0.2
4,475,032	-				-1.4
4,475,034	+				+0.4
4,475,034	+				-1.7
4,475,034	+				+1.3
4,475,034	+				+1.5
4,475,034	+				+0.5
4,475,034	+				-0.5
4,475,034	+				+0.4
4,475,042	-				-0.1
4,475,047	+				+0.2
4,475,055	-				-0.2
4,475,055	-				-0.2
4,475,065	+				+1.4
4,475,073	-				+0.6
4,475,205	-		GFF4482	0.23	+0.4
4,475,208	-		GFF4482	0.23	-0.0
4,475,254	+		GFF4482	0.31	-0.1
4,475,254	+		GFF4482	0.31	+0.5
4,475,254	+		GFF4482	0.31	+0.6
4,475,271	+		GFF4482	0.33	-1.3
4,475,274	-		GFF4482	0.34	+0.2
4,475,279	-		GFF4482	0.35	+1.3
4,475,279	-		GFF4482	0.35	+0.3
4,475,279	-		GFF4482	0.35	-2.1
4,475,281	+		GFF4482	0.35	-0.1
4,475,281	+		GFF4482	0.35	-1.4
4,475,284	-		GFF4482	0.35	+1.3
4,475,289	-		GFF4482	0.36	+0.5
4,475,316	-		GFF4482	0.41	+0.1
4,475,346	-		GFF4482	0.46	-0.1
4,475,358	+		GFF4482	0.48	+1.4
4,475,390	+		GFF4482	0.53	-1.4
4,475,392	-		GFF4482	0.53	-0.6
4,475,393	+		GFF4482	0.53	+0.6
4,475,398	+		GFF4482	0.54	+1.7
4,475,398	+		GFF4482	0.54	-0.7
4,475,398	+		GFF4482	0.54	-1.8
4,475,400	-		GFF4482	0.54	-0.0
4,475,424	+		GFF4482	0.58	-1.1
4,475,432	-		GFF4482	0.60	-2.1
4,475,436	+		GFF4482	0.60	+1.4
4,475,443	+		GFF4482	0.61	+0.7
4,475,458	-		GFF4482	0.64	+1.1