Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4477 and GFF4478 are separated by 306 nucleotides GFF4478 and GFF4479 are separated by 524 nucleotides
GFF4477 - hypothetical protein, at 4,471,448 to 4,472,677
GFF4477
GFF4478 - hypothetical protein, at 4,472,984 to 4,473,097
GFF4478
GFF4479 - CopG protein, at 4,473,622 to 4,474,065
GFF4479
Position (kb) 4472
4473
4474 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4471.984 kb on - strand, within GFF4477 at 4471.984 kb on - strand, within GFF4477 at 4471.984 kb on - strand, within GFF4477 at 4471.984 kb on - strand, within GFF4477 at 4471.984 kb on - strand, within GFF4477 at 4471.984 kb on - strand, within GFF4477 at 4471.993 kb on + strand, within GFF4477 at 4472.001 kb on - strand, within GFF4477 at 4472.001 kb on - strand, within GFF4477 at 4472.001 kb on - strand, within GFF4477 at 4472.015 kb on + strand, within GFF4477 at 4472.015 kb on + strand, within GFF4477 at 4472.015 kb on - strand, within GFF4477 at 4472.023 kb on - strand, within GFF4477 at 4472.060 kb on - strand, within GFF4477 at 4472.063 kb on + strand, within GFF4477 at 4472.063 kb on + strand, within GFF4477 at 4472.063 kb on + strand, within GFF4477 at 4472.068 kb on + strand, within GFF4477 at 4472.071 kb on - strand, within GFF4477 at 4472.071 kb on - strand, within GFF4477 at 4472.071 kb on - strand, within GFF4477 at 4472.073 kb on + strand, within GFF4477 at 4472.099 kb on - strand, within GFF4477 at 4472.124 kb on - strand, within GFF4477 at 4472.134 kb on + strand, within GFF4477 at 4472.135 kb on - strand, within GFF4477 at 4472.150 kb on + strand, within GFF4477 at 4472.150 kb on + strand, within GFF4477 at 4472.150 kb on + strand, within GFF4477 at 4472.158 kb on - strand, within GFF4477 at 4472.160 kb on + strand, within GFF4477 at 4472.160 kb on + strand, within GFF4477 at 4472.160 kb on + strand, within GFF4477 at 4472.168 kb on - strand, within GFF4477 at 4472.168 kb on - strand, within GFF4477 at 4472.184 kb on + strand, within GFF4477 at 4472.184 kb on + strand, within GFF4477 at 4472.187 kb on - strand, within GFF4477 at 4472.193 kb on + strand, within GFF4477 at 4472.210 kb on + strand, within GFF4477 at 4472.218 kb on - strand, within GFF4477 at 4472.218 kb on - strand, within GFF4477 at 4472.219 kb on + strand, within GFF4477 at 4472.219 kb on + strand, within GFF4477 at 4472.227 kb on - strand, within GFF4477 at 4472.227 kb on - strand, within GFF4477 at 4472.227 kb on - strand, within GFF4477 at 4472.227 kb on - strand, within GFF4477 at 4472.245 kb on + strand, within GFF4477 at 4472.253 kb on - strand, within GFF4477 at 4472.260 kb on + strand, within GFF4477 at 4472.264 kb on - strand, within GFF4477 at 4472.268 kb on - strand, within GFF4477 at 4472.276 kb on + strand, within GFF4477 at 4472.281 kb on + strand, within GFF4477 at 4472.284 kb on - strand, within GFF4477 at 4472.286 kb on + strand, within GFF4477 at 4472.289 kb on - strand, within GFF4477 at 4472.291 kb on + strand, within GFF4477 at 4472.291 kb on + strand, within GFF4477 at 4472.293 kb on + strand, within GFF4477 at 4472.294 kb on - strand, within GFF4477 at 4472.294 kb on - strand, within GFF4477 at 4472.299 kb on - strand, within GFF4477 at 4472.301 kb on - strand, within GFF4477 at 4472.342 kb on - strand, within GFF4477 at 4472.342 kb on - strand, within GFF4477 at 4472.365 kb on + strand, within GFF4477 at 4472.392 kb on - strand, within GFF4477 at 4472.404 kb on + strand, within GFF4477 at 4472.442 kb on - strand, within GFF4477 at 4472.442 kb on - strand, within GFF4477 at 4472.472 kb on + strand, within GFF4477 at 4472.474 kb on + strand, within GFF4477 at 4472.480 kb on - strand, within GFF4477 at 4472.533 kb on - strand, within GFF4477 at 4472.554 kb on + strand, within GFF4477 at 4472.559 kb on + strand at 4472.562 kb on - strand at 4472.562 kb on - strand at 4472.566 kb on - strand at 4472.576 kb on + strand at 4472.599 kb on - strand at 4472.612 kb on + strand at 4472.641 kb on - strand at 4472.643 kb on + strand at 4472.702 kb on + strand at 4472.702 kb on + strand at 4472.705 kb on - strand at 4472.710 kb on - strand at 4472.725 kb on - strand at 4472.737 kb on - strand at 4472.752 kb on - strand at 4472.757 kb on - strand at 4472.766 kb on + strand at 4472.766 kb on + strand at 4472.797 kb on - strand at 4472.799 kb on + strand at 4472.799 kb on + strand at 4472.799 kb on + strand at 4472.799 kb on + strand at 4472.799 kb on + strand at 4472.799 kb on + strand at 4472.807 kb on - strand at 4472.807 kb on - strand at 4472.807 kb on - strand at 4472.807 kb on - strand at 4472.807 kb on - strand at 4472.807 kb on - strand at 4472.807 kb on - strand at 4472.814 kb on - strand at 4472.817 kb on - strand at 4472.817 kb on - strand at 4472.827 kb on + strand at 4472.827 kb on - strand at 4472.838 kb on + strand at 4472.849 kb on + strand at 4472.860 kb on + strand at 4472.860 kb on + strand at 4472.860 kb on + strand at 4472.860 kb on + strand at 4472.861 kb on - strand at 4472.863 kb on - strand at 4472.865 kb on + strand at 4472.868 kb on - strand at 4472.868 kb on - strand at 4472.890 kb on - strand at 4472.922 kb on + strand at 4472.923 kb on - strand at 4472.932 kb on + strand at 4472.947 kb on + strand at 4472.949 kb on + strand at 4472.955 kb on - strand at 4472.955 kb on - strand at 4472.976 kb on - strand at 4472.976 kb on - strand at 4473.065 kb on + strand, within GFF4478 at 4473.065 kb on + strand, within GFF4478 at 4473.066 kb on - strand, within GFF4478 at 4473.071 kb on - strand, within GFF4478 at 4473.073 kb on - strand, within GFF4478 at 4473.073 kb on - strand, within GFF4478 at 4473.100 kb on + strand at 4473.100 kb on + strand at 4473.100 kb on + strand at 4473.154 kb on - strand at 4473.202 kb on - strand at 4473.202 kb on - strand at 4473.204 kb on + strand at 4473.204 kb on + strand at 4473.204 kb on + strand at 4473.204 kb on + strand at 4473.204 kb on + strand at 4473.232 kb on + strand at 4473.232 kb on + strand at 4473.232 kb on + strand at 4473.239 kb on + strand at 4473.239 kb on + strand at 4473.240 kb on - strand at 4473.244 kb on + strand at 4473.244 kb on + strand at 4473.247 kb on - strand at 4473.247 kb on - strand at 4473.247 kb on - strand at 4473.249 kb on + strand at 4473.249 kb on + strand at 4473.249 kb on + strand at 4473.249 kb on + strand at 4473.249 kb on + strand at 4473.252 kb on - strand at 4473.257 kb on - strand at 4473.276 kb on - strand at 4473.281 kb on + strand at 4473.281 kb on + strand at 4473.286 kb on + strand at 4473.291 kb on + strand at 4473.291 kb on + strand at 4473.299 kb on - strand at 4473.299 kb on - strand at 4473.299 kb on - strand at 4473.299 kb on - strand at 4473.348 kb on + strand at 4473.348 kb on + strand at 4473.354 kb on - strand at 4473.356 kb on - strand at 4473.356 kb on - strand at 4473.356 kb on - strand at 4473.373 kb on + strand at 4473.373 kb on - strand at 4473.380 kb on - strand at 4473.380 kb on - strand at 4473.381 kb on - strand at 4473.390 kb on + strand at 4473.390 kb on + strand at 4473.398 kb on - strand at 4473.398 kb on - strand at 4473.400 kb on + strand at 4473.400 kb on - strand at 4473.408 kb on - strand at 4473.408 kb on - strand at 4473.415 kb on + strand at 4473.423 kb on - strand at 4473.432 kb on + strand at 4473.448 kb on + strand at 4473.456 kb on + strand at 4473.456 kb on - strand at 4473.458 kb on + strand at 4473.458 kb on + strand at 4473.458 kb on + strand at 4473.458 kb on + strand at 4473.458 kb on + strand at 4473.458 kb on + strand at 4473.466 kb on - strand at 4473.466 kb on - strand at 4473.466 kb on - strand at 4473.466 kb on - strand at 4473.466 kb on - strand at 4473.471 kb on - strand at 4473.480 kb on - strand at 4473.600 kb on - strand at 4473.609 kb on - strand at 4473.637 kb on + strand at 4473.645 kb on - strand at 4473.667 kb on + strand, within GFF4479 at 4473.667 kb on + strand, within GFF4479 at 4473.675 kb on - strand, within GFF4479 at 4473.677 kb on + strand, within GFF4479 at 4473.677 kb on + strand, within GFF4479 at 4473.677 kb on + strand, within GFF4479 at 4473.682 kb on + strand, within GFF4479 at 4473.685 kb on - strand, within GFF4479 at 4473.685 kb on - strand, within GFF4479 at 4473.685 kb on - strand, within GFF4479 at 4473.685 kb on - strand, within GFF4479 at 4473.685 kb on - strand, within GFF4479 at 4473.685 kb on - strand, within GFF4479 at 4473.685 kb on - strand, within GFF4479 at 4473.685 kb on - strand, within GFF4479 at 4473.690 kb on - strand, within GFF4479 at 4473.742 kb on + strand, within GFF4479 at 4473.750 kb on - strand, within GFF4479 at 4473.758 kb on + strand, within GFF4479 at 4473.759 kb on - strand, within GFF4479 at 4473.769 kb on - strand, within GFF4479 at 4473.801 kb on + strand, within GFF4479 at 4473.819 kb on + strand, within GFF4479 at 4473.825 kb on - strand, within GFF4479 at 4473.851 kb on - strand, within GFF4479 at 4473.853 kb on - strand, within GFF4479 at 4473.920 kb on - strand, within GFF4479 at 4473.921 kb on - strand, within GFF4479 at 4473.940 kb on + strand, within GFF4479 at 4473.940 kb on + strand, within GFF4479 at 4473.940 kb on + strand, within GFF4479 at 4473.953 kb on - strand, within GFF4479 at 4473.965 kb on - strand, within GFF4479 at 4473.967 kb on + strand, within GFF4479 at 4473.970 kb on - strand, within GFF4479 at 4474.004 kb on + strand, within GFF4479 at 4474.021 kb on + strand at 4474.031 kb on + strand at 4474.031 kb on + strand at 4474.031 kb on + strand at 4474.055 kb on - strand at 4474.065 kb on + strand at 4474.097 kb on - strand at 4474.097 kb on - strand at 4474.097 kb on - strand at 4474.097 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate remove 4,471,984 - GFF4477 0.44 -0.8 4,471,984 - GFF4477 0.44 -1.2 4,471,984 - GFF4477 0.44 -1.6 4,471,984 - GFF4477 0.44 +0.2 4,471,984 - GFF4477 0.44 -0.1 4,471,984 - GFF4477 0.44 -0.1 4,471,993 + GFF4477 0.44 -1.6 4,472,001 - GFF4477 0.45 +0.2 4,472,001 - GFF4477 0.45 -2.2 4,472,001 - GFF4477 0.45 -0.8 4,472,015 + GFF4477 0.46 +0.1 4,472,015 + GFF4477 0.46 -1.9 4,472,015 - GFF4477 0.46 +1.1 4,472,023 - GFF4477 0.47 +1.5 4,472,060 - GFF4477 0.50 -0.1 4,472,063 + GFF4477 0.50 +2.3 4,472,063 + GFF4477 0.50 +0.6 4,472,063 + GFF4477 0.50 -1.1 4,472,068 + GFF4477 0.50 -1.5 4,472,071 - GFF4477 0.51 -0.4 4,472,071 - GFF4477 0.51 +1.0 4,472,071 - GFF4477 0.51 -2.5 4,472,073 + GFF4477 0.51 +1.1 4,472,099 - GFF4477 0.53 +1.0 4,472,124 - GFF4477 0.55 -1.6 4,472,134 + GFF4477 0.56 +0.8 4,472,135 - GFF4477 0.56 +1.3 4,472,150 + GFF4477 0.57 +1.2 4,472,150 + GFF4477 0.57 -0.4 4,472,150 + GFF4477 0.57 +0.1 4,472,158 - GFF4477 0.58 +0.5 4,472,160 + GFF4477 0.58 +1.3 4,472,160 + GFF4477 0.58 +0.5 4,472,160 + GFF4477 0.58 +0.3 4,472,168 - GFF4477 0.59 +1.6 4,472,168 - GFF4477 0.59 +0.6 4,472,184 + GFF4477 0.60 +1.3 4,472,184 + GFF4477 0.60 -0.0 4,472,187 - GFF4477 0.60 +0.1 4,472,193 + GFF4477 0.61 +0.2 4,472,210 + GFF4477 0.62 +0.2 4,472,218 - GFF4477 0.63 +0.7 4,472,218 - GFF4477 0.63 -0.9 4,472,219 + GFF4477 0.63 +0.8 4,472,219 + GFF4477 0.63 +1.3 4,472,227 - GFF4477 0.63 +0.5 4,472,227 - GFF4477 0.63 +0.5 4,472,227 - GFF4477 0.63 -0.5 4,472,227 - GFF4477 0.63 +1.0 4,472,245 + GFF4477 0.65 +0.2 4,472,253 - GFF4477 0.65 +0.5 4,472,260 + GFF4477 0.66 -0.4 4,472,264 - GFF4477 0.66 +0.3 4,472,268 - GFF4477 0.67 -0.9 4,472,276 + GFF4477 0.67 -0.9 4,472,281 + GFF4477 0.68 +0.0 4,472,284 - GFF4477 0.68 +1.3 4,472,286 + GFF4477 0.68 +0.4 4,472,289 - GFF4477 0.68 -1.4 4,472,291 + GFF4477 0.69 +0.3 4,472,291 + GFF4477 0.69 +0.5 4,472,293 + GFF4477 0.69 +1.2 4,472,294 - GFF4477 0.69 -0.2 4,472,294 - GFF4477 0.69 +0.3 4,472,299 - GFF4477 0.69 -0.6 4,472,301 - GFF4477 0.69 -0.7 4,472,342 - GFF4477 0.73 -1.0 4,472,342 - GFF4477 0.73 -1.4 4,472,365 + GFF4477 0.75 -0.4 4,472,392 - GFF4477 0.77 +1.0 4,472,404 + GFF4477 0.78 +0.2 4,472,442 - GFF4477 0.81 +0.5 4,472,442 - GFF4477 0.81 -1.8 4,472,472 + GFF4477 0.83 -0.1 4,472,474 + GFF4477 0.83 +0.0 4,472,480 - GFF4477 0.84 -0.8 4,472,533 - GFF4477 0.88 +1.1 4,472,554 + GFF4477 0.90 +1.1 4,472,559 + -0.4 4,472,562 - -0.0 4,472,562 - -0.4 4,472,566 - +0.3 4,472,576 + -0.2 4,472,599 - +0.7 4,472,612 + -0.3 4,472,641 - +1.5 4,472,643 + -0.3 4,472,702 + +0.7 4,472,702 + -1.8 4,472,705 - -0.6 4,472,710 - -2.2 4,472,725 - +0.9 4,472,737 - -0.0 4,472,752 - +2.3 4,472,757 - +0.8 4,472,766 + +1.6 4,472,766 + +0.2 4,472,797 - +1.0 4,472,799 + -0.7 4,472,799 + -2.0 4,472,799 + -1.6 4,472,799 + +0.2 4,472,799 + -0.9 4,472,799 + +0.0 4,472,807 - -1.9 4,472,807 - -0.2 4,472,807 - +0.2 4,472,807 - +0.2 4,472,807 - -0.4 4,472,807 - +0.2 4,472,807 - +1.0 4,472,814 - -2.7 4,472,817 - -0.2 4,472,817 - -0.2 4,472,827 + +0.5 4,472,827 - -0.7 4,472,838 + -0.8 4,472,849 + -1.9 4,472,860 + -1.0 4,472,860 + +0.2 4,472,860 + +0.9 4,472,860 + -0.9 4,472,861 - -1.1 4,472,863 - -0.4 4,472,865 + -1.4 4,472,868 - -1.5 4,472,868 - +0.9 4,472,890 - +0.2 4,472,922 + +0.4 4,472,923 - +0.8 4,472,932 + -0.2 4,472,947 + -0.7 4,472,949 + -0.1 4,472,955 - -0.7 4,472,955 - -0.9 4,472,976 - -0.9 4,472,976 - +1.0 4,473,065 + GFF4478 0.71 +0.2 4,473,065 + GFF4478 0.71 -0.4 4,473,066 - GFF4478 0.72 -0.7 4,473,071 - GFF4478 0.76 +0.6 4,473,073 - GFF4478 0.78 -0.4 4,473,073 - GFF4478 0.78 -0.4 4,473,100 + -0.8 4,473,100 + -1.0 4,473,100 + -0.2 4,473,154 - +1.0 4,473,202 - -0.7 4,473,202 - +0.5 4,473,204 + -0.1 4,473,204 + -0.2 4,473,204 + +1.3 4,473,204 + -0.0 4,473,204 + +0.2 4,473,232 + +0.3 4,473,232 + -0.4 4,473,232 + +0.7 4,473,239 + -0.8 4,473,239 + -1.2 4,473,240 - +0.4 4,473,244 + -1.5 4,473,244 + -1.5 4,473,247 - -0.4 4,473,247 - +1.8 4,473,247 - -0.4 4,473,249 + +0.5 4,473,249 + -2.6 4,473,249 + -0.8 4,473,249 + -1.5 4,473,249 + +1.1 4,473,252 - -2.0 4,473,257 - +1.6 4,473,276 - +0.1 4,473,281 + -0.7 4,473,281 + +0.7 4,473,286 + +0.6 4,473,291 + +2.2 4,473,291 + -0.3 4,473,299 - +1.3 4,473,299 - -0.0 4,473,299 - -1.0 4,473,299 - -0.4 4,473,348 + -0.3 4,473,348 + +0.9 4,473,354 - -0.1 4,473,356 - -0.6 4,473,356 - +1.4 4,473,356 - +1.4 4,473,373 + +1.0 4,473,373 - -0.1 4,473,380 - +0.6 4,473,380 - +0.4 4,473,381 - +1.3 4,473,390 + +0.2 4,473,390 + -0.2 4,473,398 - +0.9 4,473,398 - -0.8 4,473,400 + +0.6 4,473,400 - +0.6 4,473,408 - -1.5 4,473,408 - -0.5 4,473,415 + -1.1 4,473,423 - +1.2 4,473,432 + +0.4 4,473,448 + -0.5 4,473,456 + -1.6 4,473,456 - +0.7 4,473,458 + -0.9 4,473,458 + +0.3 4,473,458 + -0.3 4,473,458 + -0.6 4,473,458 + -1.1 4,473,458 + -0.4 4,473,466 - -1.3 4,473,466 - -0.0 4,473,466 - +0.7 4,473,466 - -0.4 4,473,466 - -0.4 4,473,471 - +0.7 4,473,480 - +0.6 4,473,600 - -0.3 4,473,609 - -0.3 4,473,637 + +1.0 4,473,645 - +0.2 4,473,667 + GFF4479 0.10 +0.6 4,473,667 + GFF4479 0.10 -0.7 4,473,675 - GFF4479 0.12 -0.3 4,473,677 + GFF4479 0.12 +0.0 4,473,677 + GFF4479 0.12 -0.5 4,473,677 + GFF4479 0.12 +0.4 4,473,682 + GFF4479 0.14 -0.6 4,473,685 - GFF4479 0.14 +1.2 4,473,685 - GFF4479 0.14 -1.1 4,473,685 - GFF4479 0.14 +0.2 4,473,685 - GFF4479 0.14 +0.4 4,473,685 - GFF4479 0.14 -0.6 4,473,685 - GFF4479 0.14 +0.9 4,473,685 - GFF4479 0.14 -0.8 4,473,685 - GFF4479 0.14 -0.5 4,473,690 - GFF4479 0.15 -0.7 4,473,742 + GFF4479 0.27 -1.4 4,473,750 - GFF4479 0.29 +0.9 4,473,758 + GFF4479 0.31 -0.8 4,473,759 - GFF4479 0.31 +2.0 4,473,769 - GFF4479 0.33 +1.8 4,473,801 + GFF4479 0.40 -0.8 4,473,819 + GFF4479 0.44 -0.7 4,473,825 - GFF4479 0.46 -1.1 4,473,851 - GFF4479 0.52 +0.2 4,473,853 - GFF4479 0.52 +0.5 4,473,920 - GFF4479 0.67 +1.5 4,473,921 - GFF4479 0.67 -0.1 4,473,940 + GFF4479 0.72 +0.9 4,473,940 + GFF4479 0.72 -0.3 4,473,940 + GFF4479 0.72 +0.4 4,473,953 - GFF4479 0.75 +0.6 4,473,965 - GFF4479 0.77 -0.5 4,473,967 + GFF4479 0.78 +0.6 4,473,970 - GFF4479 0.78 +0.1 4,474,004 + GFF4479 0.86 +0.2 4,474,021 + -0.9 4,474,031 + -1.6 4,474,031 + -0.4 4,474,031 + +0.4 4,474,055 - -0.2 4,474,065 + +0.2 4,474,097 - -0.4 4,474,097 - +0.2 4,474,097 - +0.3 4,474,097 - -0.3
Or see this region's nucleotide sequence