Strain Fitness in Sphingobium sp. HT1-2 around GFF4437

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,430,853	+		GFF4436	0.15	+1.3
4,430,853	+		GFF4436	0.15	-0.1
4,430,854	-		GFF4436	0.15	-2.1
4,430,861	-		GFF4436	0.15	-0.5
4,430,908	-		GFF4436	0.20	+0.9
4,430,908	-		GFF4436	0.20	-0.7
4,430,917	-		GFF4436	0.20	+0.7
4,430,935	+		GFF4436	0.22	+0.4
4,430,961	+		GFF4436	0.24	-1.3
4,431,090	+		GFF4436	0.36	+1.6
4,431,095	+		GFF4436	0.37	+1.3
4,431,095	+		GFF4436	0.37	+1.8
4,431,095	+		GFF4436	0.37	+0.8
4,431,095	+		GFF4436	0.37	-0.7
4,431,098	-		GFF4436	0.37	+1.9
4,431,098	-		GFF4436	0.37	-1.8
4,431,103	-		GFF4436	0.37	+1.2
4,431,103	-		GFF4436	0.37	+1.3
4,431,103	-		GFF4436	0.37	+0.6
4,431,134	+		GFF4436	0.40	-0.3
4,431,164	+		GFF4436	0.43	+0.6
4,431,164	+		GFF4436	0.43	+0.6
4,431,169	+		GFF4436	0.43	+0.8
4,431,172	-		GFF4436	0.43	-0.8
4,431,172	-		GFF4436	0.43	+0.2
4,431,174	+		GFF4436	0.44	+0.2
4,431,174	+		GFF4436	0.44	+1.3
4,431,177	-		GFF4436	0.44	-1.3
4,431,177	-		GFF4436	0.44	-0.7
4,431,233	+		GFF4436	0.49	+0.9
4,431,233	+		GFF4436	0.49	-1.4
4,431,233	+		GFF4436	0.49	+0.8
4,431,233	+		GFF4436	0.49	+0.3
4,431,233	+		GFF4436	0.49	-1.2
4,431,238	+		GFF4436	0.49	-0.8
4,431,238	+		GFF4436	0.49	-0.3
4,431,238	+		GFF4436	0.49	+0.2
4,431,238	+		GFF4436	0.49	-1.1
4,431,238	+		GFF4436	0.49	-1.1
4,431,238	+		GFF4436	0.49	-1.9
4,431,241	-		GFF4436	0.50	+0.2
4,431,241	-		GFF4436	0.50	-0.2
4,431,245	+		GFF4436	0.50	+0.5
4,431,246	-		GFF4436	0.50	+0.6
4,431,246	-		GFF4436	0.50	-1.9
4,431,246	-		GFF4436	0.50	-0.9
4,431,246	-		GFF4436	0.50	+1.7
4,431,246	-		GFF4436	0.50	+0.3
4,431,246	-		GFF4436	0.50	+1.8
4,431,246	-		GFF4436	0.50	-0.3
4,431,285	+		GFF4436	0.54	+0.3
4,431,285	+		GFF4436	0.54	+1.2
4,431,285	+		GFF4436	0.54	-0.8
4,431,293	-		GFF4436	0.54	+0.5
4,431,293	-		GFF4436	0.54	-0.4
4,431,293	-		GFF4436	0.54	+0.4
4,431,293	-		GFF4436	0.54	-0.5
4,431,303	+		GFF4436	0.55	-1.1
4,431,303	+		GFF4436	0.55	+0.5
4,431,345	-		GFF4436	0.59	-1.7
4,431,345	-		GFF4436	0.59	-0.7
4,431,367	+		GFF4436	0.61	-0.0
4,431,368	-		GFF4436	0.61	-2.3
4,431,425	+		GFF4436	0.66	+0.7
4,431,435	+		GFF4436	0.67	-0.9
4,431,435	+		GFF4436	0.67	-0.2
4,431,435	+		GFF4436	0.67	+0.5
4,431,441	+		GFF4436	0.68	-0.2
4,431,443	-		GFF4436	0.68	-1.3
4,431,453	+		GFF4436	0.69	+1.0
4,431,463	+		GFF4436	0.70	+0.2
4,431,463	+		GFF4436	0.70	+1.0
4,431,469	+		GFF4436	0.70	+0.8
4,431,492	-		GFF4436	0.72	+0.4
4,431,494	+		GFF4436	0.73	-0.6
4,431,499	+		GFF4436	0.73	+0.0
4,431,539	+		GFF4436	0.77	-0.5
4,431,539	+		GFF4436	0.77	+1.8
4,431,545	-		GFF4436	0.77	-0.8
4,431,547	-		GFF4436	0.77	-0.8
4,431,547	-		GFF4436	0.77	-0.6
4,431,567	-		GFF4436	0.79	-0.0
4,431,650	-		GFF4436	0.87	+0.5
4,431,697	-				-1.5
4,431,697	-				-0.1
4,431,697	-				+0.9
4,431,714	-				+1.0
4,431,746	+				-2.5
4,431,796	+				+0.3
4,431,796	+				+1.0
4,431,796	+				+0.6
4,431,796	+				+0.4
4,431,796	+				+0.1
4,431,797	-				-0.8
4,431,804	-				+0.1
4,431,804	-				-1.9
4,431,815	+				-0.2
4,431,853	-				-2.2
4,431,856	+				+0.9
4,431,879	+				-0.4
4,431,899	+				-2.1
4,431,904	+				-1.1
4,431,907	-				+1.2
4,431,907	-				+0.6
4,431,912	+				+1.2
4,431,929	-				-1.7
4,431,934	-				+0.0
4,431,948	-				+0.4
4,431,965	-		GFF4437	0.12	+0.2
4,431,990	-		GFF4437	0.14	+0.8
4,431,990	-		GFF4437	0.14	-1.1
4,432,067	+		GFF4437	0.22	-0.3
4,432,109	+		GFF4437	0.26	+1.3
4,432,117	-		GFF4437	0.27	-0.1
4,432,134	-		GFF4437	0.29	-1.5
4,432,144	+		GFF4437	0.30	-1.5
4,432,162	-		GFF4437	0.32	+1.2
4,432,180	+		GFF4437	0.33	+0.2
4,432,188	-		GFF4437	0.34	-1.6
4,432,210	+		GFF4437	0.36	-1.7
4,432,234	+		GFF4437	0.39	-2.1
4,432,242	-		GFF4437	0.40	-0.7
4,432,267	+		GFF4437	0.42	-0.3
4,432,275	-		GFF4437	0.43	+0.2
4,432,277	+		GFF4437	0.43	-1.9
4,432,303	+		GFF4437	0.46	+0.2
4,432,303	+		GFF4437	0.46	-0.8
4,432,311	-		GFF4437	0.47	-1.3
4,432,311	-		GFF4437	0.47	-0.4
4,432,311	-		GFF4437	0.47	+0.2
4,432,311	-		GFF4437	0.47	+1.6
4,432,311	-		GFF4437	0.47	-1.3
4,432,311	-		GFF4437	0.47	+1.9
4,432,437	+		GFF4437	0.60	-1.3
4,432,493	-		GFF4437	0.65	+1.7
4,432,535	-		GFF4437	0.70	+1.0
4,432,545	-		GFF4437	0.71	-0.8
4,432,597	+		GFF4437	0.76	-0.6
4,432,648	+		GFF4437	0.81	+0.2
4,432,661	-		GFF4437	0.82	-0.6
4,432,663	+		GFF4437	0.83	+0.8
4,432,676	+		GFF4437	0.84	-1.9
4,432,678	+		GFF4437	0.84	+0.4
4,432,683	+		GFF4437	0.85	-1.3
4,432,687	+		GFF4437	0.85	+0.6
4,432,687	+		GFF4437	0.85	-0.1
4,432,687	+		GFF4437	0.85	+0.4
4,432,695	-		GFF4437	0.86	+0.6
4,432,695	-		GFF4437	0.86	-0.1
4,432,713	+		GFF4437	0.88	-0.3
4,432,713	+		GFF4437	0.88	+0.6
4,432,713	+		GFF4437	0.88	-0.5
4,432,713	+		GFF4437	0.88	-0.4
4,432,713	+		GFF4437	0.88	-0.0
4,432,721	-		GFF4437	0.89	-0.7
4,432,721	-		GFF4437	0.89	-0.1
4,432,726	-		GFF4437	0.89	+0.7
4,432,726	-		GFF4437	0.89	-0.3
4,432,736	+				-3.0
4,432,744	-				-1.1
4,432,751	-				+0.7
4,432,752	-				+0.4
4,432,754	+				+1.2
4,432,762	+				+0.2
4,432,762	-				-0.2
4,432,790	-				-0.5
4,432,801	-				+0.2
4,432,816	+				-0.4
4,432,816	+				-0.1
4,432,816	+				+1.4
4,432,816	+				+0.4
4,432,820	-				+0.3
4,432,824	-				+1.3
4,432,830	-				+0.6
4,432,958	-				+0.0
4,432,960	-				+0.6
4,433,050	+				-0.5
4,433,053	+				-1.2
4,433,058	-				+1.1
4,433,060	+				+0.5
4,433,060	+				-0.6
4,433,094	+				-0.6
4,433,097	+				+3.0
4,433,129	+				-0.1
4,433,129	+				-1.0
4,433,129	+				-1.7
4,433,129	+				-0.1
4,433,129	+				-0.8
4,433,137	-				+0.2
4,433,145	-				-2.1
4,433,148	-				-0.4
4,433,148	-				+0.7
4,433,148	-				-1.3
4,433,185	-		GFF4438	0.12	+0.7
4,433,201	-		GFF4438	0.13	+0.9
4,433,221	+		GFF4438	0.15	-0.0
4,433,221	+		GFF4438	0.15	+1.0
4,433,229	-		GFF4438	0.16	-1.6
4,433,296	+		GFF4438	0.21	-1.4
4,433,302	+		GFF4438	0.22	-0.2
4,433,332	+		GFF4438	0.24	-0.6
4,433,337	+		GFF4438	0.25	+0.9
4,433,346	-		GFF4438	0.25	+1.4
4,433,369	+		GFF4438	0.27	+0.4
4,433,379	-		GFF4438	0.28	+1.4
4,433,417	+		GFF4438	0.31	+0.8
4,433,472	+		GFF4438	0.36	+0.1
4,433,472	+		GFF4438	0.36	+0.6
4,433,472	+		GFF4438	0.36	-0.3
4,433,472	+		GFF4438	0.36	+0.8
4,433,472	+		GFF4438	0.36	-2.0
4,433,480	-		GFF4438	0.37	-0.1
4,433,480	-		GFF4438	0.37	+0.6
4,433,480	-		GFF4438	0.37	-1.1
4,433,480	-		GFF4438	0.37	+2.4
4,433,480	-		GFF4438	0.37	+2.8
4,433,480	-		GFF4438	0.37	-1.3
4,433,595	-		GFF4438	0.46	+0.1
4,433,642	+		GFF4438	0.50	-0.8
4,433,650	-		GFF4438	0.51	+2.2
4,433,650	-		GFF4438	0.51	+0.7
4,433,665	-		GFF4438	0.52	-1.0
4,433,683	+		GFF4438	0.53	-0.6
4,433,688	+		GFF4438	0.54	+1.2
4,433,688	+		GFF4438	0.54	+0.7
4,433,688	+		GFF4438	0.54	-1.9
4,433,698	+		GFF4438	0.55	-1.6
4,433,698	+		GFF4438	0.55	+1.0
4,433,698	+		GFF4438	0.55	+2.0
4,433,698	+		GFF4438	0.55	-1.0
4,433,698	+		GFF4438	0.55	+0.6
4,433,706	-		GFF4438	0.55	-0.1
4,433,752	-		GFF4438	0.59	-0.3
4,433,829	+		GFF4438	0.66	-0.6
4,433,829	+		GFF4438	0.66	-2.3