Strain Fitness in Sphingobium sp. HT1-2 around GFF4435

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,428,201	+		GFF4434	0.12	-0.1
4,428,206	+		GFF4434	0.12	-1.5
4,428,212	+		GFF4434	0.13	+0.1
4,428,217	+		GFF4434	0.13	-0.4
4,428,217	+		GFF4434	0.13	-0.9
4,428,217	+		GFF4434	0.13	+0.8
4,428,217	+		GFF4434	0.13	+0.6
4,428,217	+		GFF4434	0.13	+0.5
4,428,217	+		GFF4434	0.13	+0.2
4,428,217	+		GFF4434	0.13	+0.1
4,428,225	-		GFF4434	0.14	-1.0
4,428,225	-		GFF4434	0.14	-0.6
4,428,225	-		GFF4434	0.14	-0.8
4,428,225	-		GFF4434	0.14	+0.2
4,428,225	-		GFF4434	0.14	-0.4
4,428,225	-		GFF4434	0.14	+0.2
4,428,225	-		GFF4434	0.14	+1.2
4,428,229	-		GFF4434	0.15	-0.4
4,428,265	-		GFF4434	0.18	+0.1
4,428,270	+		GFF4434	0.18	+0.5
4,428,270	+		GFF4434	0.18	+0.3
4,428,270	+		GFF4434	0.18	+0.8
4,428,278	-		GFF4434	0.19	-0.2
4,428,278	-		GFF4434	0.19	-1.9
4,428,278	-		GFF4434	0.19	+0.2
4,428,278	-		GFF4434	0.19	+0.5
4,428,293	-		GFF4434	0.20	+0.5
4,428,309	+		GFF4434	0.22	-0.4
4,428,347	-		GFF4434	0.25	-0.4
4,428,352	-		GFF4434	0.25	-0.4
4,428,357	-		GFF4434	0.26	-1.1
4,428,367	-		GFF4434	0.27	-0.2
4,428,376	+		GFF4434	0.28	-0.3
4,428,379	-		GFF4434	0.28	-0.1
4,428,384	-		GFF4434	0.28	+1.3
4,428,384	-		GFF4434	0.28	+0.9
4,428,396	+		GFF4434	0.29	-1.3
4,428,405	+		GFF4434	0.30	+0.8
4,428,410	+		GFF4434	0.31	+0.2
4,428,447	-		GFF4434	0.34	-0.1
4,428,475	+		GFF4434	0.36	-0.6
4,428,475	-		GFF4434	0.36	-0.0
4,428,486	+		GFF4434	0.37	-1.3
4,428,486	+		GFF4434	0.37	-1.2
4,428,489	-		GFF4434	0.38	+0.2
4,428,494	-		GFF4434	0.38	-0.4
4,428,497	+		GFF4434	0.38	+0.1
4,428,498	+		GFF4434	0.38	-1.2
4,428,501	-		GFF4434	0.39	-1.9
4,428,505	-		GFF4434	0.39	+0.6
4,428,507	-		GFF4434	0.39	+0.1
4,428,507	-		GFF4434	0.39	-0.2
4,428,525	+		GFF4434	0.41	+0.9
4,428,525	+		GFF4434	0.41	+1.2
4,428,525	+		GFF4434	0.41	-2.0
4,428,525	+		GFF4434	0.41	-2.1
4,428,525	+		GFF4434	0.41	-0.1
4,428,530	+		GFF4434	0.41	-1.1
4,428,533	-		GFF4434	0.41	-0.9
4,428,533	-		GFF4434	0.41	-0.3
4,428,533	-		GFF4434	0.41	+0.4
4,428,533	-		GFF4434	0.41	-1.2
4,428,533	-		GFF4434	0.41	-0.6
4,428,533	-		GFF4434	0.41	-0.6
4,428,533	-		GFF4434	0.41	-0.5
4,428,533	-		GFF4434	0.41	-0.0
4,428,548	+		GFF4434	0.43	+0.1
4,428,560	-		GFF4434	0.44	+0.1
4,428,591	+		GFF4434	0.47	-0.9
4,428,591	+		GFF4434	0.47	-0.6
4,428,591	+		GFF4434	0.47	+0.2
4,428,592	+		GFF4434	0.47	-2.0
4,428,599	-		GFF4434	0.47	-1.1
4,428,599	-		GFF4434	0.47	+1.1
4,428,600	-		GFF4434	0.47	+0.1
4,428,614	+		GFF4434	0.49	-0.1
4,428,614	+		GFF4434	0.49	-1.1
4,428,618	-		GFF4434	0.49	-0.8
4,428,620	-		GFF4434	0.49	+0.2
4,428,622	-		GFF4434	0.49	+0.1
4,428,631	+		GFF4434	0.50	-2.8
4,428,635	-		GFF4434	0.51	-0.6
4,428,637	-		GFF4434	0.51	-0.5
4,428,650	+		GFF4434	0.52	-0.8
4,428,650	+		GFF4434	0.52	-0.5
4,428,658	-		GFF4434	0.53	-0.0
4,428,667	+		GFF4434	0.53	-1.3
4,428,672	+		GFF4434	0.54	-2.0
4,428,672	+		GFF4434	0.54	-0.1
4,428,672	+		GFF4434	0.54	+0.7
4,428,672	+		GFF4434	0.54	+1.4
4,428,677	+		GFF4434	0.54	+0.4
4,428,677	+		GFF4434	0.54	+0.2
4,428,677	+		GFF4434	0.54	-2.3
4,428,685	+		GFF4434	0.55	-0.5
4,428,685	+		GFF4434	0.55	+1.5
4,428,685	-		GFF4434	0.55	-0.4
4,428,685	-		GFF4434	0.55	-0.4
4,428,690	+		GFF4434	0.55	-1.8
4,428,690	+		GFF4434	0.55	-0.1
4,428,690	+		GFF4434	0.55	-0.8
4,428,693	-		GFF4434	0.56	+0.2
4,428,693	-		GFF4434	0.56	+0.1
4,428,698	+		GFF4434	0.56	-0.6
4,428,698	-		GFF4434	0.56	-0.6
4,428,698	-		GFF4434	0.56	+1.1
4,428,698	-		GFF4434	0.56	-0.2
4,428,707	-		GFF4434	0.57	+0.5
4,428,711	-		GFF4434	0.57	+0.5
4,428,713	+		GFF4434	0.57	+0.4
4,428,713	+		GFF4434	0.57	-1.4
4,428,713	+		GFF4434	0.57	-0.0
4,428,721	-		GFF4434	0.58	+0.8
4,428,721	-		GFF4434	0.58	+1.3
4,428,721	-		GFF4434	0.58	-1.0
4,428,721	-		GFF4434	0.58	-0.2
4,428,726	-		GFF4434	0.59	-0.8
4,428,747	+		GFF4434	0.60	+1.0
4,428,747	+		GFF4434	0.60	-0.5
4,428,755	-		GFF4434	0.61	-0.5
4,428,755	-		GFF4434	0.61	-1.6
4,428,755	-		GFF4434	0.61	-1.6
4,428,771	-		GFF4434	0.63	-1.6
4,428,771	-		GFF4434	0.63	-0.2
4,428,771	-		GFF4434	0.63	-0.5
4,428,785	-		GFF4434	0.64	-1.2
4,428,801	+		GFF4434	0.65	-0.9
4,428,801	+		GFF4434	0.65	-1.1
4,428,822	-		GFF4434	0.67	+0.0
4,428,835	+		GFF4434	0.68	+0.6
4,428,846	+		GFF4434	0.69	-2.2
4,428,852	+		GFF4434	0.70	+0.7
4,428,860	+		GFF4434	0.70	-0.0
4,428,860	-		GFF4434	0.70	+0.7
4,428,880	-		GFF4434	0.72	-0.3
4,428,882	+		GFF4434	0.72	+0.9
4,428,911	+		GFF4434	0.75	-1.0
4,428,911	+		GFF4434	0.75	-0.8
4,428,911	-		GFF4434	0.75	-1.3
4,428,911	-		GFF4434	0.75	-0.8
4,428,914	+		GFF4434	0.75	-0.8
4,428,931	-		GFF4434	0.77	-1.4
4,428,941	+		GFF4434	0.78	-0.5
4,428,989	-		GFF4434	0.82	+1.3
4,429,012	+		GFF4434	0.84	-2.5
4,429,018	+		GFF4434	0.84	-0.8
4,429,026	-		GFF4434	0.85	+0.3
4,429,040	+		GFF4434	0.86	-1.6
4,429,050	+		GFF4434	0.87	-0.3
4,429,055	+		GFF4434	0.88	-1.6
4,429,096	+				-0.5
4,429,101	+				-0.6
4,429,104	-				+0.1
4,429,163	-				+0.8
4,429,163	-				+1.3
4,429,165	+				-0.3
4,429,167	-				+0.5
4,429,168	+				+0.5
4,429,168	-				-0.9
4,429,168	-				-1.3
4,429,174	+				+0.6
4,429,184	+				-0.9
4,429,190	-				+0.9
4,429,198	+				-0.1
4,429,202	-				+0.7
4,429,203	+				-0.5
4,429,203	+				+0.2
4,429,206	-				-0.4
4,429,216	+				-1.2
4,429,223	+				-1.6
4,429,224	-				+0.4
4,429,225	+				+1.3
4,429,231	-				-0.2
4,429,262	+				-0.8
4,429,262	+				-0.1
4,429,262	+				-0.9
4,429,262	+				+0.8
4,429,262	+				+0.9
4,429,262	+				+0.0
4,429,262	+				-1.0
4,429,262	+				-0.4
4,429,262	+				+1.1
4,429,262	-				-1.5
4,429,268	+				+0.6
4,429,270	-				-0.4
4,429,270	-				-0.0
4,429,270	-				-1.9
4,429,270	-				+0.4
4,429,270	-				+0.5
4,429,270	-				-1.0
4,429,270	-				+0.4
4,429,270	-				+2.2
4,429,270	-				-0.0
4,429,281	+				-1.0
4,429,289	-				-0.8
4,429,293	+				+0.0
4,429,298	+				+0.2
4,429,298	+				-1.5
4,429,306	-				+0.8
4,429,306	-				-0.1
4,429,306	-				+2.1
4,429,330	+				+1.3
4,429,349	+		GFF4435	0.11	+0.2
4,429,358	-		GFF4435	0.12	-0.1
4,429,367	-		GFF4435	0.12	-0.5
4,429,380	+		GFF4435	0.13	-1.6
4,429,387	-		GFF4435	0.14	+0.1
4,429,390	+		GFF4435	0.14	-2.5
4,429,417	+		GFF4435	0.16	+0.7
4,429,425	-		GFF4435	0.16	-0.4
4,429,426	+		GFF4435	0.16	+1.4
4,429,426	+		GFF4435	0.16	+1.1
4,429,434	-		GFF4435	0.17	+0.3
4,429,434	-		GFF4435	0.17	+0.3
4,429,434	-		GFF4435	0.17	+1.2
4,429,434	-		GFF4435	0.17	-1.5
4,429,434	-		GFF4435	0.17	-2.2
4,429,436	-		GFF4435	0.17	-1.7
4,429,436	-		GFF4435	0.17	-0.2
4,429,436	-		GFF4435	0.17	-0.5
4,429,436	-		GFF4435	0.17	-0.9
4,429,436	-		GFF4435	0.17	-0.5
4,429,457	+		GFF4435	0.18	-1.6
4,429,467	+		GFF4435	0.19	+1.2
4,429,471	+		GFF4435	0.19	+1.4
4,429,475	-		GFF4435	0.20	-0.3
4,429,475	-		GFF4435	0.20	-1.2
4,429,479	-		GFF4435	0.20	-0.1
4,429,510	+		GFF4435	0.22	+0.8
4,429,526	+		GFF4435	0.23	+1.5
4,429,526	+		GFF4435	0.23	-1.3
4,429,526	+		GFF4435	0.23	-0.3
4,429,529	-		GFF4435	0.23	+0.2
4,429,534	-		GFF4435	0.24	+0.7
4,429,535	+		GFF4435	0.24	-0.3
4,429,571	-		GFF4435	0.26	-1.9
4,429,578	+		GFF4435	0.27	+0.7
4,429,584	+		GFF4435	0.27	-0.0
4,429,584	+		GFF4435	0.27	-1.1
4,429,589	+		GFF4435	0.27	+0.7
4,429,609	-		GFF4435	0.29	-0.0
4,429,609	-		GFF4435	0.29	+0.1
4,429,619	-		GFF4435	0.30	-0.5
4,429,621	+		GFF4435	0.30	+0.2
4,429,621	+		GFF4435	0.30	-1.9
4,429,621	+		GFF4435	0.30	-2.1
4,429,622	+		GFF4435	0.30	+0.2
4,429,622	+		GFF4435	0.30	-0.3
4,429,622	+		GFF4435	0.30	+1.7
4,429,630	-		GFF4435	0.30	+1.4
4,429,630	-		GFF4435	0.30	-0.3
4,429,645	-		GFF4435	0.31	+0.1
4,429,669	-		GFF4435	0.33	-0.8
4,429,693	+		GFF4435	0.35	-0.4
4,429,701	-		GFF4435	0.35	-0.7
4,429,701	-		GFF4435	0.35	+1.1
4,429,704	+		GFF4435	0.35	+1.2
4,429,704	+		GFF4435	0.35	-1.9
4,429,712	-		GFF4435	0.36	+0.9
4,429,719	-		GFF4435	0.36	+0.6
4,429,723	+		GFF4435	0.37	-0.5
4,429,723	+		GFF4435	0.37	+0.6
4,429,723	+		GFF4435	0.37	+0.7
4,429,728	+		GFF4435	0.37	+0.4
4,429,728	+		GFF4435	0.37	-0.6
4,429,728	+		GFF4435	0.37	-0.4
4,429,728	+		GFF4435	0.37	-0.5
4,429,728	+		GFF4435	0.37	-2.4
4,429,728	+		GFF4435	0.37	-0.7
4,429,728	+		GFF4435	0.37	-1.4
4,429,728	+		GFF4435	0.37	-0.8
4,429,728	+		GFF4435	0.37	+0.8
4,429,728	+		GFF4435	0.37	+0.1
4,429,728	+		GFF4435	0.37	+1.8
4,429,728	+		GFF4435	0.37	+0.4
4,429,728	+		GFF4435	0.37	+0.2
4,429,728	+		GFF4435	0.37	+0.1
4,429,731	-		GFF4435	0.37	+0.7
4,429,735	+		GFF4435	0.38	-0.9
4,429,735	+		GFF4435	0.38	+1.8
4,429,736	-		GFF4435	0.38	+0.6
4,429,736	-		GFF4435	0.38	+0.6
4,429,736	-		GFF4435	0.38	+0.7
4,429,736	-		GFF4435	0.38	-1.5
4,429,736	-		GFF4435	0.38	+0.1
4,429,736	-		GFF4435	0.38	-0.5
4,429,736	-		GFF4435	0.38	-0.2
4,429,736	-		GFF4435	0.38	-0.0
4,429,736	-		GFF4435	0.38	+0.2
4,429,736	-		GFF4435	0.38	-0.4
4,429,736	-		GFF4435	0.38	-0.4
4,429,736	-		GFF4435	0.38	+0.2
4,429,736	-		GFF4435	0.38	+0.2
4,429,736	-		GFF4435	0.38	+0.2
4,429,736	-		GFF4435	0.38	+0.1
4,429,736	-		GFF4435	0.38	+0.6
4,429,736	-		GFF4435	0.38	+1.6
4,429,736	-		GFF4435	0.38	-0.4
4,429,736	-		GFF4435	0.38	-3.4
4,429,740	+		GFF4435	0.38	+0.2
4,429,743	-		GFF4435	0.38	+0.1
4,429,743	-		GFF4435	0.38	-1.6
4,429,758	-		GFF4435	0.39	-0.9
4,429,765	+		GFF4435	0.40	-0.0
4,429,770	+		GFF4435	0.40	+1.5
4,429,773	-		GFF4435	0.40	+0.8
4,429,773	-		GFF4435	0.40	-0.8
4,429,794	+		GFF4435	0.42	-1.1
4,429,812	+		GFF4435	0.43	-0.6
4,429,827	+		GFF4435	0.44	-2.1
4,429,832	-		GFF4435	0.44	+1.2
4,429,853	-		GFF4435	0.46	+0.1
4,429,880	-		GFF4435	0.47	-1.5
4,429,887	-		GFF4435	0.48	-1.5
4,429,902	+		GFF4435	0.49	+0.3
4,429,914	+		GFF4435	0.50	+0.2
4,429,957	+		GFF4435	0.53	-0.1
4,429,965	-		GFF4435	0.53	-1.9
4,429,978	+		GFF4435	0.54	+0.2
4,429,994	+		GFF4435	0.55	-0.2
4,430,014	+		GFF4435	0.57	-0.3
4,430,040	+		GFF4435	0.58	+0.4
4,430,045	+		GFF4435	0.59	-1.2
4,430,045	+		GFF4435	0.59	-0.1
4,430,052	+		GFF4435	0.59	+0.3
4,430,053	-		GFF4435	0.59	-3.0
4,430,053	-		GFF4435	0.59	+0.5
4,430,060	-		GFF4435	0.60	-1.6
4,430,104	-		GFF4435	0.63	+0.5
4,430,108	+		GFF4435	0.63	+1.1
4,430,108	+		GFF4435	0.63	+0.3
4,430,116	+		GFF4435	0.64	+0.0
4,430,116	+		GFF4435	0.64	-2.6
4,430,116	+		GFF4435	0.64	+0.2
4,430,116	+		GFF4435	0.64	-1.0
4,430,116	-		GFF4435	0.64	-0.7
4,430,116	-		GFF4435	0.64	+1.8
4,430,124	-		GFF4435	0.64	+0.4
4,430,124	-		GFF4435	0.64	-0.1
4,430,147	+		GFF4435	0.66	+2.2
4,430,152	+		GFF4435	0.66	-1.1
4,430,155	-		GFF4435	0.66	-1.3
4,430,160	-		GFF4435	0.67	+0.6
4,430,160	-		GFF4435	0.67	-0.2
4,430,160	-		GFF4435	0.67	+0.5
4,430,168	+		GFF4435	0.67	-1.3
4,430,168	+		GFF4435	0.67	-0.0
4,430,168	+		GFF4435	0.67	-0.8
4,430,168	+		GFF4435	0.67	-0.4
4,430,168	+		GFF4435	0.67	+1.5
4,430,168	+		GFF4435	0.67	+0.4
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4,430,505	+				-0.0
4,430,505	+				-0.2
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4,430,512	-				+0.8
4,430,515	+				+0.2
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4,430,525	+				-1.6
4,430,536	+				-0.5
4,430,536	+				-1.6
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4,430,542	-				+0.4
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4,430,544	-				+0.1
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4,430,555	+				-3.0
4,430,581	-				-2.7
4,430,582	+				-1.5
4,430,583	+				-1.1
4,430,589	-				-1.3
4,430,602	-				-0.9
4,430,612	+				+0.1
4,430,678	+				-0.1
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4,430,678	+				+0.4
4,430,678	+				+0.5
4,430,678	+				-0.9
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4,430,686	-				-0.4
4,430,686	-				+0.7
4,430,686	-				-2.4
4,430,686	-				+0.6
4,430,686	-				-1.4
4,430,697	+				-1.1
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4,430,699	+				-0.9
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4,430,707	-				+0.5
4,430,707	-				+0.8
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4,430,707	-				-0.3
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4,430,730	+				+0.3
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4,430,741	-				-2.5
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4,431,238	+		GFF4436	0.49	+0.1
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