Strain Fitness in Sphingobium sp. HT1-2 around GFF4190

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,208,408	+				-0.7
4,208,408	+				-1.9
4,208,408	+				-0.3
4,208,416	-				-0.9
4,208,416	-				-0.2
4,208,416	-				-0.9
4,208,416	-				-0.3
4,208,472	-		GFF4189	0.14	+1.9
4,208,479	-		GFF4189	0.15	-2.6
4,208,481	-		GFF4189	0.15	+1.5
4,208,515	+		GFF4189	0.22	-0.7
4,208,515	+		GFF4189	0.22	-0.3
4,208,515	+		GFF4189	0.22	-1.3
4,208,530	+		GFF4189	0.25	-0.5
4,208,530	+		GFF4189	0.25	-0.1
4,208,530	+		GFF4189	0.25	+0.2
4,208,530	+		GFF4189	0.25	-1.9
4,208,530	+		GFF4189	0.25	+1.1
4,208,531	-		GFF4189	0.25	+0.6
4,208,552	+		GFF4189	0.30	-0.6
4,208,557	+		GFF4189	0.31	-0.7
4,208,557	+		GFF4189	0.31	+1.2
4,208,557	+		GFF4189	0.31	-0.2
4,208,557	+		GFF4189	0.31	-1.4
4,208,557	+		GFF4189	0.31	-0.4
4,208,565	-		GFF4189	0.32	-1.4
4,208,565	-		GFF4189	0.32	-0.2
4,208,565	-		GFF4189	0.32	-0.4
4,208,570	-		GFF4189	0.33	-2.4
4,208,596	+		GFF4189	0.38	+0.2
4,208,599	-		GFF4189	0.39	-0.8
4,208,601	+		GFF4189	0.39	-0.4
4,208,601	+		GFF4189	0.39	+0.9
4,208,601	+		GFF4189	0.39	-0.3
4,208,601	+		GFF4189	0.39	-1.5
4,208,604	-		GFF4189	0.40	-2.2
4,208,604	-		GFF4189	0.40	+1.0
4,208,607	+		GFF4189	0.41	+0.9
4,208,608	+		GFF4189	0.41	-0.5
4,208,623	+		GFF4189	0.44	-0.7
4,208,623	+		GFF4189	0.44	+1.1
4,208,623	+		GFF4189	0.44	-0.6
4,208,641	-		GFF4189	0.47	+0.2
4,208,664	-		GFF4189	0.52	+0.4
4,208,687	-		GFF4189	0.56	+0.0
4,208,731	-		GFF4189	0.65	-1.9
4,208,800	-		GFF4189	0.79	+0.6
4,208,800	-		GFF4189	0.79	+0.4
4,208,800	-		GFF4189	0.79	+0.9
4,208,887	+				-0.6
4,208,894	-				-1.0
4,208,916	+				+0.9
4,208,916	+				+0.4
4,208,924	+				+0.4
4,208,937	+				+0.2
4,208,937	+				-0.7
4,208,939	+				+0.6
4,209,065	+				-1.1
4,209,088	+				-1.0
4,209,106	+				-1.3
4,209,132	+				-0.0
4,209,217	-		GFF4190	0.10	-0.7
4,209,313	+		GFF4190	0.14	-1.4
4,209,313	+		GFF4190	0.14	-1.4
4,209,321	-		GFF4190	0.14	-3.4
4,209,332	+		GFF4190	0.15	+0.3
4,209,348	-		GFF4190	0.15	-0.0
4,209,350	-		GFF4190	0.15	-0.5
4,209,358	+		GFF4190	0.16	-0.3
4,209,406	+		GFF4190	0.17	-1.0
4,209,471	-		GFF4190	0.20	-1.2
4,209,471	-		GFF4190	0.20	-1.2
4,209,481	-		GFF4190	0.20	+0.6
4,209,529	-		GFF4190	0.22	-1.6
4,209,545	+		GFF4190	0.22	+0.3
4,209,924	+		GFF4190	0.36	-0.3
4,210,117	+		GFF4190	0.43	-1.4
4,210,147	-		GFF4190	0.44	-1.4
4,210,301	+		GFF4190	0.50	+0.3
4,210,309	-		GFF4190	0.50	-0.7
4,210,319	-		GFF4190	0.50	-0.3
4,210,349	-		GFF4190	0.52	-0.7
4,210,371	-		GFF4190	0.52	-0.0
4,210,499	-		GFF4190	0.57	-1.0
4,210,664	+		GFF4190	0.63	-2.0
4,210,887	-		GFF4190	0.71	-0.9
4,210,927	+		GFF4190	0.73	-0.5
4,210,927	+		GFF4190	0.73	-1.3
4,210,927	+		GFF4190	0.73	-1.5
4,210,935	-		GFF4190	0.73	+0.7
4,210,955	+		GFF4190	0.74	-1.7
4,210,958	-		GFF4190	0.74	+0.3
4,210,978	-		GFF4190	0.74	-1.2
4,211,055	+		GFF4190	0.77	-1.2
4,211,236	-		GFF4190	0.84	-0.5
4,211,548	+				-1.0
4,211,604	-				+1.3
4,211,622	-				-0.4
4,211,671	-				-1.8
4,211,671	-				-3.3
4,211,671	-				-1.9
4,211,679	+				+0.3
4,211,679	+				+0.2
4,211,681	-				+0.3
4,211,687	-				-0.5
4,211,688	-				-0.4
4,211,693	-				-0.7
4,211,695	-				-1.0
4,211,713	-				-0.6
4,211,737	+				+1.2
4,211,737	+				-1.0
4,211,761	+				-1.2
4,211,761	+				-0.2
4,211,761	+				+1.6
4,211,761	+				+0.3
4,211,765	+				+0.5
4,211,771	+				-0.3
4,211,773	-				+2.3
4,211,785	+				+0.7
4,211,785	+				-0.5
4,211,793	-				+0.1
4,211,809	+				+0.1
4,211,819	+				+1.0
4,211,822	-				-0.0
4,211,829	-				+1.2
4,211,842	+				+0.8
4,211,848	-				+0.1
4,211,852	+				+0.4
4,211,852	-				+0.0
4,211,857	+				+0.4
4,211,858	-				-0.1
4,211,862	+				+0.6
4,211,876	-				-1.4
4,211,903	+				-0.1
4,211,903	+				-0.0
4,211,903	+				-0.7
4,211,911	-				+0.0
4,211,913	+				-2.4
4,211,913	+				-1.1
4,211,913	+				-2.5
4,211,913	+				+0.1
4,211,913	+				+0.2
4,211,913	+				-0.1
4,211,913	+				-1.6
4,211,913	+				-0.4
4,211,913	+				+1.3
4,211,918	+				+0.4
4,211,921	-				+0.5
4,211,921	-				-1.0
4,211,939	+				+1.6
4,211,972	+		GFF4191	0.10	-1.6
4,211,978	+		GFF4191	0.11	-0.1
4,211,978	+		GFF4191	0.11	-0.6
4,211,978	+		GFF4191	0.11	+0.1
4,211,978	+		GFF4191	0.11	-0.1
4,211,981	-		GFF4191	0.11	-2.2
4,211,986	-		GFF4191	0.11	-0.9
4,212,090	-		GFF4191	0.15	+0.7
4,212,101	+		GFF4191	0.15	-1.1
4,212,104	-		GFF4191	0.15	-0.5
4,212,115	+		GFF4191	0.16	-0.7
4,212,123	-		GFF4191	0.16	+0.6
4,212,125	+		GFF4191	0.16	-0.2
4,212,136	+		GFF4191	0.16	+0.5
4,212,142	+		GFF4191	0.17	+0.5
4,212,144	-		GFF4191	0.17	-0.0
4,212,154	+		GFF4191	0.17	-1.3
4,212,166	+		GFF4191	0.18	+1.8
4,212,166	+		GFF4191	0.18	+0.6
4,212,166	+		GFF4191	0.18	+2.1
4,212,171	+		GFF4191	0.18	+0.1
4,212,176	+		GFF4191	0.18	-0.3
4,212,204	-		GFF4191	0.19	+0.7
4,212,224	+		GFF4191	0.20	-0.7
4,212,234	+		GFF4191	0.20	-0.4
4,212,273	-		GFF4191	0.22	-1.8
4,212,273	-		GFF4191	0.22	+0.0
4,212,282	+		GFF4191	0.22	+0.1
4,212,328	+		GFF4191	0.24	-1.0
4,212,338	-		GFF4191	0.24	+0.1
4,212,351	+		GFF4191	0.25	+0.4
4,212,351	+		GFF4191	0.25	+0.5
4,212,354	-		GFF4191	0.25	-0.9
4,212,374	+		GFF4191	0.26	-0.2
4,212,388	+		GFF4191	0.26	-0.2
4,212,392	+		GFF4191	0.26	+0.2
4,212,435	-		GFF4191	0.28	-0.7
4,212,477	-		GFF4191	0.29	-0.3
4,212,510	+		GFF4191	0.31	-0.8
4,212,510	+		GFF4191	0.31	-0.8
4,212,510	+		GFF4191	0.31	-0.8
4,212,519	-		GFF4191	0.31	-0.2
4,212,519	-		GFF4191	0.31	-1.4
4,212,519	-		GFF4191	0.31	-0.9
4,212,519	-		GFF4191	0.31	+2.3
4,212,519	-		GFF4191	0.31	+0.7
4,212,526	-		GFF4191	0.31	-1.1
4,212,530	+		GFF4191	0.31	-1.1
4,212,574	-		GFF4191	0.33	+1.1
4,212,578	+		GFF4191	0.33	+1.4
4,212,578	+		GFF4191	0.33	-2.4
4,212,586	-		GFF4191	0.34	+0.3
4,212,586	-		GFF4191	0.34	-1.3