Strain Fitness in Sphingobium sp. HT1-2 around GFF4134

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,159,069	+		GFF4133	0.23	+1.1
4,159,071	-		GFF4133	0.23	-1.6
4,159,072	-		GFF4133	0.23	+0.2
4,159,083	+		GFF4133	0.24	+0.7
4,159,083	+		GFF4133	0.24	+0.0
4,159,088	+		GFF4133	0.24	-2.0
4,159,091	-		GFF4133	0.24	-0.3
4,159,093	+		GFF4133	0.24	+0.8
4,159,098	+		GFF4133	0.25	+0.1
4,159,103	+		GFF4133	0.25	-0.6
4,159,153	+		GFF4133	0.29	-0.6
4,159,206	+		GFF4133	0.33	-0.6
4,159,246	+		GFF4133	0.36	+0.2
4,159,254	-		GFF4133	0.37	-0.2
4,159,273	-		GFF4133	0.38	+1.0
4,159,273	-		GFF4133	0.38	+0.7
4,159,296	+		GFF4133	0.40	+0.7
4,159,362	-		GFF4133	0.45	-1.3
4,159,367	+		GFF4133	0.46	+1.8
4,159,372	-		GFF4133	0.46	-0.2
4,159,375	-		GFF4133	0.46	-0.3
4,159,380	-		GFF4133	0.47	-0.4
4,159,394	-		GFF4133	0.48	-1.5
4,159,395	-		GFF4133	0.48	+0.7
4,159,404	-		GFF4133	0.49	-1.3
4,159,408	+		GFF4133	0.49	-1.6
4,159,408	-		GFF4133	0.49	+0.6
4,159,410	+		GFF4133	0.49	-0.8
4,159,444	+		GFF4133	0.52	+0.7
4,159,448	+		GFF4133	0.52	+0.0
4,159,456	-		GFF4133	0.53	+0.2
4,159,486	+		GFF4133	0.55	-2.4
4,159,486	-		GFF4133	0.55	+0.7
4,159,494	-		GFF4133	0.56	-1.0
4,159,525	+		GFF4133	0.58	-1.5
4,159,562	-		GFF4133	0.61	+0.4
4,159,686	+		GFF4133	0.70	+0.5
4,159,710	-		GFF4133	0.72	+0.1
4,159,712	+		GFF4133	0.72	-1.3
4,159,725	-		GFF4133	0.74	+1.1
4,159,765	-		GFF4133	0.77	-0.2
4,159,765	-		GFF4133	0.77	-2.3
4,159,814	+		GFF4133	0.80	-1.1
4,159,841	-		GFF4133	0.83	-2.5
4,159,846	-		GFF4133	0.83	-0.5
4,159,846	-		GFF4133	0.83	+0.6
4,159,861	+		GFF4133	0.84	-0.7
4,159,871	+		GFF4133	0.85	+0.7
4,159,874	+		GFF4133	0.85	+0.4
4,159,885	-		GFF4133	0.86	-0.2
4,159,890	-		GFF4133	0.86	-1.8
4,159,924	+		GFF4133	0.89	-0.7
4,159,939	+				-0.8
4,159,947	-				+0.6
4,159,970	+				+0.4
4,159,970	+				+1.5
4,159,970	-				-1.9
4,159,978	-				+1.2
4,160,019	-				+0.8
4,160,042	-				+0.5
4,160,042	-				+1.1
4,160,042	-				-0.5
4,160,071	-				+1.3
4,160,071	-				-1.5
4,160,071	-				-0.9
4,160,085	+				-1.0
4,160,097	+		GFF4134	0.12	-1.3
4,160,097	+		GFF4134	0.12	-1.5
4,160,107	+		GFF4134	0.16	-1.7
4,160,107	+		GFF4134	0.16	-1.4
4,160,125	+		GFF4134	0.23	+0.0
4,160,166	+		GFF4134	0.39	+0.3
4,160,166	+		GFF4134	0.39	+0.5
4,160,166	+		GFF4134	0.39	+0.4
4,160,166	+		GFF4134	0.39	-0.1
4,160,166	+		GFF4134	0.39	-0.6
4,160,174	-		GFF4134	0.42	-0.3
4,160,174	-		GFF4134	0.42	+0.4
4,160,174	-		GFF4134	0.42	-2.4
4,160,174	-		GFF4134	0.42	+1.0
4,160,174	-		GFF4134	0.42	-1.9
4,160,178	+		GFF4134	0.43	-1.3
4,160,196	-		GFF4134	0.50	+1.2
4,160,211	+		GFF4134	0.56	-1.4
4,160,214	-		GFF4134	0.57	-0.1
4,160,214	-		GFF4134	0.57	-0.1
4,160,214	-		GFF4134	0.57	-0.5
4,160,216	+		GFF4134	0.58	+0.2
4,160,224	-		GFF4134	0.61	-0.6
4,160,226	+		GFF4134	0.62	+1.1
4,160,228	-		GFF4134	0.63	-0.8
4,160,236	-		GFF4134	0.66	-1.3
4,160,250	+		GFF4134	0.71	+0.3
4,160,250	+		GFF4134	0.71	-1.5
4,160,258	-		GFF4134	0.74	-1.7
4,160,258	-		GFF4134	0.74	-0.7
4,160,258	-		GFF4134	0.74	+0.2
4,160,267	+		GFF4134	0.78	+0.0
4,160,303	-				-0.3
4,160,324	+				-1.9
4,160,329	+				+0.1
4,160,332	-				-0.3
4,160,339	+				-1.4
4,160,347	-				-0.9
4,160,372	-				+0.1
4,160,381	+		GFF4135	0.11	-0.5
4,160,389	-		GFF4135	0.18	-1.6
4,160,416	+		GFF4135	0.40	-0.3
4,160,418	+		GFF4135	0.41	-2.7
4,160,421	-		GFF4135	0.44	+0.3
4,160,424	+		GFF4135	0.46	-1.7
4,160,424	-		GFF4135	0.46	-1.6
4,160,424	-		GFF4135	0.46	-0.2
4,160,445	-		GFF4135	0.63	+1.2
4,160,474	-		GFF4135	0.87	+0.4
4,160,474	-		GFF4135	0.87	-0.0
4,160,474	-		GFF4135	0.87	-0.4
4,160,480	-				-0.4
4,160,508	-				-1.8
4,160,515	+				+0.1
4,160,522	+				+1.2
4,160,522	-				+0.7
4,160,561	+		GFF4136	0.10	+0.6
4,160,561	+		GFF4136	0.10	-0.4
4,160,573	-		GFF4136	0.12	-2.1
4,160,635	+		GFF4136	0.21	+0.6
4,160,643	-		GFF4136	0.22	-1.8
4,160,666	+		GFF4136	0.25	+1.1
4,160,666	+		GFF4136	0.25	+0.4
4,160,666	+		GFF4136	0.25	-1.3
4,160,666	+		GFF4136	0.25	+1.0
4,160,666	+		GFF4136	0.25	+0.1
4,160,666	+		GFF4136	0.25	+1.3
4,160,674	-		GFF4136	0.26	+0.2
4,160,674	-		GFF4136	0.26	+0.3
4,160,674	-		GFF4136	0.26	-1.9
4,160,676	+		GFF4136	0.27	+1.0
4,160,717	+		GFF4136	0.33	-0.2
4,160,725	-		GFF4136	0.34	-2.6
4,160,744	+		GFF4136	0.36	-0.8
4,160,748	-		GFF4136	0.37	+0.8
4,160,764	-		GFF4136	0.39	+1.5
4,160,766	+		GFF4136	0.40	-1.7
4,160,766	+		GFF4136	0.40	-1.3
4,160,766	+		GFF4136	0.40	+0.3
4,160,766	+		GFF4136	0.40	-0.4
4,160,766	+		GFF4136	0.40	-0.8
4,160,766	+		GFF4136	0.40	-2.0
4,160,766	+		GFF4136	0.40	-1.7
4,160,766	+		GFF4136	0.40	-0.2
4,160,774	-		GFF4136	0.41	-0.0
4,160,784	-		GFF4136	0.42	+0.5
4,160,806	+		GFF4136	0.45	-0.1
4,160,823	-		GFF4136	0.48	+0.1
4,160,835	+		GFF4136	0.49	+0.5
4,160,835	+		GFF4136	0.49	-1.3
4,160,843	-		GFF4136	0.51	-1.1
4,160,872	+		GFF4136	0.55	-0.4
4,160,880	-		GFF4136	0.56	+0.9
4,160,880	-		GFF4136	0.56	-0.7
4,160,918	+		GFF4136	0.61	-0.5
4,160,926	-		GFF4136	0.62	-0.4
4,160,946	-		GFF4136	0.65	+0.1
4,160,987	+		GFF4136	0.71	-0.2
4,160,995	+		GFF4136	0.72	+1.3
4,161,001	+		GFF4136	0.73	-0.3
4,161,027	-		GFF4136	0.77	+1.5
4,161,029	+		GFF4136	0.77	-2.5
4,161,062	-		GFF4136	0.82	+0.4
4,161,067	-		GFF4136	0.82	-1.4
4,161,067	-		GFF4136	0.82	-0.7
4,161,067	-		GFF4136	0.82	-0.4
4,161,073	-		GFF4136	0.83	-0.1
4,161,073	-		GFF4136	0.83	-0.2
4,161,082	+		GFF4136	0.85	-1.5
4,161,082	+		GFF4136	0.85	-2.4
4,161,096	-		GFF4136	0.87	+0.1
4,161,096	-		GFF4136	0.87	-0.2
4,161,096	-		GFF4136	0.87	-0.3
4,161,150	+				-1.4
4,161,199	+				+0.2
4,161,199	+				-0.2
4,161,221	+				-0.9
4,161,231	+				-1.3
4,161,232	+				+0.2
4,161,232	+				-0.6
4,161,274	-				+0.8
4,161,275	+				+1.4
4,161,288	+		GFF4137	0.10	+0.2
4,161,302	+		GFF4137	0.12	+0.0
4,161,302	+		GFF4137	0.12	-2.3
4,161,303	+		GFF4137	0.12	-0.1
4,161,310	-		GFF4137	0.12	+0.4
4,161,310	-		GFF4137	0.12	+0.5
4,161,321	-		GFF4137	0.14	-0.4