Strain Fitness in Sphingobium sp. HT1-2 around GFF41

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF40 and GFF41 are separated by 123 nucleotidesGFF41 and GFF42 are separated by 74 nucleotidesGFF42 and GFF43 are separated by 13 nucleotides GFF40 - Glycosyltransferase, at 31,181 to 32,359 GFF40 GFF41 - hypothetical protein, at 32,483 to 32,701 GFF41 GFF42 - hypothetical protein, at 32,776 to 33,429 GFF42 GFF43 - Transporter, LysE family, at 33,443 to 34,069 GFF43 Position (kb) 32 33Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 31.505 kb on - strand, within GFF40at 31.512 kb on + strand, within GFF40at 31.513 kb on - strand, within GFF40at 31.540 kb on - strand, within GFF40at 31.540 kb on - strand, within GFF40at 31.560 kb on - strand, within GFF40at 31.560 kb on - strand, within GFF40at 31.563 kb on + strand, within GFF40at 31.571 kb on - strand, within GFF40at 31.574 kb on + strand, within GFF40at 31.616 kb on + strand, within GFF40at 31.616 kb on + strand, within GFF40at 31.624 kb on - strand, within GFF40at 31.646 kb on + strand, within GFF40at 31.654 kb on - strand, within GFF40at 31.736 kb on + strand, within GFF40at 31.787 kb on + strand, within GFF40at 31.827 kb on - strand, within GFF40at 31.847 kb on + strand, within GFF40at 31.955 kb on + strand, within GFF40at 31.960 kb on + strand, within GFF40at 31.960 kb on + strand, within GFF40at 31.968 kb on - strand, within GFF40at 31.968 kb on - strand, within GFF40at 31.968 kb on - strand, within GFF40at 31.968 kb on - strand, within GFF40at 31.968 kb on - strand, within GFF40at 31.968 kb on - strand, within GFF40at 31.988 kb on - strand, within GFF40at 31.991 kb on + strand, within GFF40at 31.999 kb on - strand, within GFF40at 31.999 kb on - strand, within GFF40at 32.002 kb on + strand, within GFF40at 32.005 kb on - strand, within GFF40at 32.010 kb on - strand, within GFF40at 32.017 kb on + strand, within GFF40at 32.017 kb on + strand, within GFF40at 32.017 kb on + strand, within GFF40at 32.017 kb on + strand, within GFF40at 32.031 kb on + strand, within GFF40at 32.044 kb on - strand, within GFF40at 32.044 kb on - strand, within GFF40at 32.044 kb on - strand, within GFF40at 32.067 kb on - strand, within GFF40at 32.067 kb on - strand, within GFF40at 32.072 kb on - strand, within GFF40at 32.072 kb on - strand, within GFF40at 32.098 kb on + strand, within GFF40at 32.123 kb on + strand, within GFF40at 32.166 kb on + strand, within GFF40at 32.166 kb on + strand, within GFF40at 32.166 kb on + strand, within GFF40at 32.174 kb on - strand, within GFF40at 32.174 kb on - strand, within GFF40at 32.174 kb on - strand, within GFF40at 32.174 kb on - strand, within GFF40at 32.178 kb on + strand, within GFF40at 32.186 kb on - strand, within GFF40at 32.208 kb on - strand, within GFF40at 32.212 kb on + strand, within GFF40at 32.223 kb on - strand, within GFF40at 32.235 kb on - strand, within GFF40at 32.240 kb on + strand, within GFF40at 32.242 kb on + strandat 32.242 kb on + strandat 32.248 kb on - strandat 32.250 kb on - strandat 32.298 kb on - strandat 32.322 kb on + strandat 32.322 kb on + strandat 32.322 kb on + strandat 32.322 kb on + strandat 32.322 kb on + strandat 32.322 kb on + strandat 32.327 kb on + strandat 32.330 kb on - strandat 32.332 kb on + strandat 32.344 kb on + strandat 32.367 kb on + strandat 32.367 kb on + strandat 32.367 kb on + strandat 32.367 kb on + strandat 32.367 kb on + strandat 32.367 kb on + strandat 32.375 kb on - strandat 32.375 kb on - strandat 32.375 kb on - strandat 32.375 kb on - strandat 32.375 kb on - strandat 32.375 kb on - strandat 32.502 kb on + strandat 32.524 kb on - strand, within GFF41at 32.563 kb on + strand, within GFF41at 32.636 kb on - strand, within GFF41at 32.641 kb on + strand, within GFF41at 32.649 kb on - strand, within GFF41at 32.649 kb on - strand, within GFF41at 32.679 kb on + strand, within GFF41at 32.687 kb on - strandat 32.687 kb on - strandat 32.692 kb on - strandat 32.718 kb on + strandat 32.718 kb on + strandat 32.727 kb on + strandat 32.727 kb on + strandat 32.737 kb on + strandat 32.772 kb on - strandat 32.778 kb on + strandat 32.782 kb on - strandat 32.786 kb on - strandat 32.788 kb on + strandat 32.788 kb on + strandat 32.808 kb on + strandat 32.816 kb on - strandat 32.820 kb on + strandat 32.820 kb on + strandat 32.820 kb on + strandat 32.820 kb on + strandat 32.847 kb on - strand, within GFF42at 32.919 kb on + strand, within GFF42at 32.919 kb on + strand, within GFF42at 32.924 kb on + strand, within GFF42at 32.927 kb on - strand, within GFF42at 32.946 kb on + strand, within GFF42at 32.954 kb on - strand, within GFF42at 32.985 kb on - strand, within GFF42at 33.026 kb on - strand, within GFF42at 33.070 kb on - strand, within GFF42at 33.100 kb on + strand, within GFF42at 33.100 kb on + strand, within GFF42at 33.100 kb on + strand, within GFF42at 33.100 kb on + strand, within GFF42at 33.100 kb on + strand, within GFF42at 33.100 kb on + strand, within GFF42at 33.100 kb on + strand, within GFF42at 33.105 kb on + strand, within GFF42at 33.105 kb on + strand, within GFF42at 33.108 kb on - strand, within GFF42at 33.118 kb on - strand, within GFF42at 33.118 kb on - strand, within GFF42at 33.129 kb on - strand, within GFF42at 33.144 kb on - strand, within GFF42at 33.195 kb on + strand, within GFF42at 33.195 kb on + strand, within GFF42at 33.195 kb on + strand, within GFF42at 33.195 kb on + strand, within GFF42at 33.195 kb on + strand, within GFF42at 33.195 kb on + strand, within GFF42at 33.195 kb on + strand, within GFF42at 33.195 kb on + strand, within GFF42at 33.195 kb on + strand, within GFF42at 33.195 kb on + strand, within GFF42at 33.195 kb on + strand, within GFF42at 33.195 kb on + strand, within GFF42at 33.195 kb on + strand, within GFF42at 33.203 kb on - strand, within GFF42at 33.203 kb on - strand, within GFF42at 33.203 kb on - strand, within GFF42at 33.203 kb on - strand, within GFF42at 33.203 kb on - strand, within GFF42at 33.203 kb on - strand, within GFF42at 33.203 kb on - strand, within GFF42at 33.203 kb on - strand, within GFF42at 33.203 kb on - strand, within GFF42at 33.203 kb on - strand, within GFF42at 33.203 kb on - strand, within GFF42at 33.203 kb on - strand, within GFF42at 33.203 kb on - strand, within GFF42at 33.241 kb on + strand, within GFF42at 33.241 kb on + strand, within GFF42at 33.242 kb on - strand, within GFF42at 33.249 kb on - strand, within GFF42at 33.249 kb on - strand, within GFF42at 33.250 kb on - strand, within GFF42at 33.271 kb on + strand, within GFF42at 33.272 kb on - strand, within GFF42at 33.272 kb on - strand, within GFF42at 33.277 kb on + strand, within GFF42at 33.277 kb on - strand, within GFF42at 33.290 kb on - strand, within GFF42at 33.290 kb on - strand, within GFF42at 33.290 kb on - strand, within GFF42at 33.290 kb on - strand, within GFF42at 33.294 kb on - strand, within GFF42at 33.324 kb on + strand, within GFF42at 33.369 kb on + strandat 33.377 kb on - strandat 33.377 kb on - strandat 33.387 kb on + strandat 33.388 kb on + strandat 33.395 kb on - strandat 33.406 kb on - strandat 33.414 kb on - strandat 33.471 kb on + strandat 33.476 kb on + strandat 33.476 kb on + strandat 33.476 kb on + strandat 33.479 kb on - strandat 33.484 kb on - strandat 33.484 kb on - strandat 33.484 kb on - strandat 33.484 kb on - strandat 33.484 kb on - strandat 33.484 kb on - strandat 33.484 kb on - strandat 33.484 kb on - strandat 33.484 kb on - strandat 33.484 kb on - strandat 33.486 kb on + strandat 33.500 kb on + strandat 33.500 kb on + strandat 33.508 kb on - strand, within GFF43at 33.560 kb on + strand, within GFF43at 33.599 kb on - strand, within GFF43at 33.625 kb on + strand, within GFF43at 33.626 kb on + strand, within GFF43at 33.626 kb on + strand, within GFF43at 33.626 kb on + strand, within GFF43at 33.631 kb on + strand, within GFF43at 33.631 kb on + strand, within GFF43at 33.631 kb on + strand, within GFF43at 33.631 kb on + strand, within GFF43at 33.631 kb on + strand, within GFF43at 33.631 kb on + strand, within GFF43at 33.631 kb on + strand, within GFF43at 33.634 kb on - strand, within GFF43at 33.634 kb on - strand, within GFF43at 33.639 kb on - strand, within GFF43at 33.639 kb on - strand, within GFF43at 33.639 kb on - strand, within GFF43at 33.639 kb on - strand, within GFF43at 33.691 kb on + strand, within GFF43at 33.691 kb on + strand, within GFF43at 33.691 kb on + strand, within GFF43at 33.696 kb on + strand, within GFF43at 33.699 kb on - strand, within GFF43at 33.699 kb on - strand, within GFF43

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate
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31,505 - GFF40 0.27 -0.6
31,512 + GFF40 0.28 -0.1
31,513 - GFF40 0.28 -1.3
31,540 - GFF40 0.30 -1.1
31,540 - GFF40 0.30 -0.5
31,560 - GFF40 0.32 +0.4
31,560 - GFF40 0.32 +1.4
31,563 + GFF40 0.32 -0.8
31,571 - GFF40 0.33 +0.0
31,574 + GFF40 0.33 -1.8
31,616 + GFF40 0.37 +0.1
31,616 + GFF40 0.37 -0.2
31,624 - GFF40 0.38 -0.1
31,646 + GFF40 0.39 -0.5
31,654 - GFF40 0.40 -2.0
31,736 + GFF40 0.47 -0.4
31,787 + GFF40 0.51 -1.4
31,827 - GFF40 0.55 +0.5
31,847 + GFF40 0.56 -0.2
31,955 + GFF40 0.66 -1.2
31,960 + GFF40 0.66 -1.3
31,960 + GFF40 0.66 -0.9
31,968 - GFF40 0.67 -1.3
31,968 - GFF40 0.67 +0.8
31,968 - GFF40 0.67 -1.2
31,968 - GFF40 0.67 +1.0
31,968 - GFF40 0.67 -1.1
31,968 - GFF40 0.67 +1.0
31,988 - GFF40 0.68 -1.3
31,991 + GFF40 0.69 +0.2
31,999 - GFF40 0.69 -0.6
31,999 - GFF40 0.69 -1.4
32,002 + GFF40 0.70 -0.2
32,005 - GFF40 0.70 -0.4
32,010 - GFF40 0.70 -2.4
32,017 + GFF40 0.71 -0.4
32,017 + GFF40 0.71 -1.4
32,017 + GFF40 0.71 -0.1
32,017 + GFF40 0.71 +1.4
32,031 + GFF40 0.72 -2.3
32,044 - GFF40 0.73 -0.8
32,044 - GFF40 0.73 -1.2
32,044 - GFF40 0.73 -1.8
32,067 - GFF40 0.75 +0.3
32,067 - GFF40 0.75 +0.4
32,072 - GFF40 0.76 +0.8
32,072 - GFF40 0.76 -0.8
32,098 + GFF40 0.78 -0.8
32,123 + GFF40 0.80 +0.8
32,166 + GFF40 0.84 +0.3
32,166 + GFF40 0.84 +0.4
32,166 + GFF40 0.84 +0.3
32,174 - GFF40 0.84 +0.5
32,174 - GFF40 0.84 -1.5
32,174 - GFF40 0.84 +1.2
32,174 - GFF40 0.84 +0.1
32,178 + GFF40 0.85 +0.6
32,186 - GFF40 0.85 -3.1
32,208 - GFF40 0.87 -0.4
32,212 + GFF40 0.87 +0.4
32,223 - GFF40 0.88 -1.9
32,235 - GFF40 0.89 -2.6
32,240 + GFF40 0.90 +1.4
32,242 + +0.8
32,242 + -1.6
32,248 - +0.5
32,250 - -1.2
32,298 - -1.5
32,322 + -0.2
32,322 + -0.2
32,322 + +0.5
32,322 + -1.3
32,322 + +1.3
32,322 + -0.4
32,327 + +0.8
32,330 - +0.4
32,332 + -0.1
32,344 + +0.2
32,367 + -0.8
32,367 + -0.7
32,367 + -0.4
32,367 + -1.2
32,367 + +0.1
32,367 + +0.6
32,375 - -0.6
32,375 - +0.4
32,375 - +0.2
32,375 - +0.2
32,375 - -0.0
32,375 - -0.2
32,502 + +0.9
32,524 - GFF41 0.19 -1.0
32,563 + GFF41 0.37 -0.7
32,636 - GFF41 0.70 -1.6
32,641 + GFF41 0.72 +0.1
32,649 - GFF41 0.76 +0.1
32,649 - GFF41 0.76 +1.2
32,679 + GFF41 0.89 -1.2
32,687 - -1.6
32,687 - -0.7
32,692 - +0.7
32,718 + +0.3
32,718 + -0.3
32,727 + -1.4
32,727 + +0.4
32,737 + -1.0
32,772 - -0.4
32,778 + +1.2
32,782 - -1.5
32,786 - +0.0
32,788 + -1.6
32,788 + +0.8
32,808 + +0.3
32,816 - -1.7
32,820 + -0.3
32,820 + +0.7
32,820 + -0.2
32,820 + -0.2
32,847 - GFF42 0.11 +0.2
32,919 + GFF42 0.22 -2.2
32,919 + GFF42 0.22 -0.1
32,924 + GFF42 0.23 +0.1
32,927 - GFF42 0.23 +0.3
32,946 + GFF42 0.26 -0.2
32,954 - GFF42 0.27 -0.4
32,985 - GFF42 0.32 -2.2
33,026 - GFF42 0.38 +0.3
33,070 - GFF42 0.45 -1.7
33,100 + GFF42 0.50 +1.2
33,100 + GFF42 0.50 -0.9
33,100 + GFF42 0.50 +0.7
33,100 + GFF42 0.50 -0.0
33,100 + GFF42 0.50 -1.8
33,100 + GFF42 0.50 +0.2
33,100 + GFF42 0.50 -1.0
33,105 + GFF42 0.50 +0.6
33,105 + GFF42 0.50 +0.7
33,108 - GFF42 0.51 +0.0
33,118 - GFF42 0.52 +1.1
33,118 - GFF42 0.52 -2.0
33,129 - GFF42 0.54 +1.3
33,144 - GFF42 0.56 +1.8
33,195 + GFF42 0.64 -1.6
33,195 + GFF42 0.64 +0.3
33,195 + GFF42 0.64 -0.2
33,195 + GFF42 0.64 -0.4
33,195 + GFF42 0.64 -0.2
33,195 + GFF42 0.64 -0.9
33,195 + GFF42 0.64 +0.8
33,195 + GFF42 0.64 -0.5
33,195 + GFF42 0.64 -0.5
33,195 + GFF42 0.64 +0.5
33,195 + GFF42 0.64 +0.5
33,195 + GFF42 0.64 +0.8
33,195 + GFF42 0.64 -0.4
33,203 - GFF42 0.65 +0.4
33,203 - GFF42 0.65 +0.9
33,203 - GFF42 0.65 +0.2
33,203 - GFF42 0.65 -0.5
33,203 - GFF42 0.65 -0.5
33,203 - GFF42 0.65 +0.6
33,203 - GFF42 0.65 +0.5
33,203 - GFF42 0.65 +1.3
33,203 - GFF42 0.65 -0.6
33,203 - GFF42 0.65 -0.8
33,203 - GFF42 0.65 +0.3
33,203 - GFF42 0.65 +0.8
33,203 - GFF42 0.65 -1.1
33,241 + GFF42 0.71 -2.0
33,241 + GFF42 0.71 +1.4
33,242 - GFF42 0.71 -0.7
33,249 - GFF42 0.72 +0.3
33,249 - GFF42 0.72 +0.1
33,250 - GFF42 0.72 +0.2
33,271 + GFF42 0.76 +0.9
33,272 - GFF42 0.76 -0.9
33,272 - GFF42 0.76 +0.8
33,277 + GFF42 0.77 -0.7
33,277 - GFF42 0.77 +0.4
33,290 - GFF42 0.79 -0.5
33,290 - GFF42 0.79 -0.8
33,290 - GFF42 0.79 +0.2
33,290 - GFF42 0.79 +0.4
33,294 - GFF42 0.79 +1.1
33,324 + GFF42 0.84 -1.8
33,369 + -2.3
33,377 - +1.0
33,377 - -0.6
33,387 + +0.3
33,388 + +0.8
33,395 - +0.5
33,406 - +0.7
33,414 - +0.7
33,471 + -1.6
33,476 + +1.2
33,476 + +0.6
33,476 + +0.2
33,479 - +0.4
33,484 - -0.7
33,484 - +0.3
33,484 - +0.7
33,484 - -0.6
33,484 - +0.4
33,484 - -0.8
33,484 - -2.1
33,484 - -0.0
33,484 - +0.9
33,484 - -0.3
33,486 + +1.0
33,500 + -0.2
33,500 + -1.1
33,508 - GFF43 0.10 -2.3
33,560 + GFF43 0.19 -1.4
33,599 - GFF43 0.25 -0.2
33,625 + GFF43 0.29 -1.0
33,626 + GFF43 0.29 -2.7
33,626 + GFF43 0.29 -0.4
33,626 + GFF43 0.29 -0.4
33,631 + GFF43 0.30 +0.9
33,631 + GFF43 0.30 +0.0
33,631 + GFF43 0.30 +0.1
33,631 + GFF43 0.30 +0.0
33,631 + GFF43 0.30 -1.3
33,631 + GFF43 0.30 -0.2
33,631 + GFF43 0.30 -1.3
33,634 - GFF43 0.30 -0.0
33,634 - GFF43 0.30 +0.3
33,639 - GFF43 0.31 -1.2
33,639 - GFF43 0.31 +1.5
33,639 - GFF43 0.31 +0.2
33,639 - GFF43 0.31 -0.0
33,691 + GFF43 0.40 +1.2
33,691 + GFF43 0.40 -0.2
33,691 + GFF43 0.40 +0.4
33,696 + GFF43 0.40 +0.3
33,699 - GFF43 0.41 +1.0
33,699 - GFF43 0.41 +1.6

Or see this region's nucleotide sequence