Strain Fitness in Sphingobium sp. HT1-2 around GFF3985

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
4,012,444	-		GFF3982	0.59	+0.2
4,012,444	-		GFF3982	0.59	-0.1
4,012,446	+		GFF3982	0.60	-0.3
4,012,475	+		GFF3982	0.66	-1.1
4,012,481	+		GFF3982	0.68	+0.3
4,012,496	+		GFF3982	0.71	-0.2
4,012,496	+		GFF3982	0.71	-0.4
4,012,504	-		GFF3982	0.73	+0.0
4,012,504	-		GFF3982	0.73	-1.5
4,012,505	-		GFF3982	0.73	+0.7
4,012,521	-		GFF3982	0.77	-1.7
4,012,522	+		GFF3982	0.77	-0.2
4,012,526	+		GFF3982	0.78	+0.4
4,012,539	+		GFF3982	0.81	-0.3
4,012,539	+		GFF3982	0.81	-0.7
4,012,539	+		GFF3982	0.81	-1.4
4,012,539	+		GFF3982	0.81	+0.4
4,012,539	+		GFF3982	0.81	+0.0
4,012,540	-		GFF3982	0.81	-0.4
4,012,547	-		GFF3982	0.83	-0.3
4,012,547	-		GFF3982	0.83	-0.9
4,012,550	+		GFF3982	0.84	-0.1
4,012,607	+				-1.6
4,012,612	+				-2.4
4,012,612	+				-0.9
4,012,612	+				-0.7
4,012,612	+				-0.4
4,012,615	-				-0.4
4,012,617	+				-1.0
4,012,620	-				-0.4
4,012,620	-				-0.7
4,012,630	-				-0.4
4,012,666	+		GFF3983	0.14	+1.0
4,012,674	-		GFF3983	0.16	-0.1
4,012,704	+		GFF3983	0.26	-1.2
4,012,704	+		GFF3983	0.26	-1.3
4,012,746	+		GFF3983	0.40	+0.4
4,012,747	+		GFF3983	0.40	+0.8
4,012,756	+		GFF3983	0.43	+0.2
4,012,777	+		GFF3983	0.50	+0.1
4,012,785	-		GFF3983	0.53	+0.8
4,012,788	+		GFF3983	0.54	-0.5
4,012,822	-		GFF3983	0.65	-0.9
4,012,822	-		GFF3983	0.65	+0.3
4,012,824	+		GFF3983	0.66	+0.6
4,012,832	-		GFF3983	0.68	-1.1
4,012,842	-		GFF3983	0.72	+0.3
4,012,842	-		GFF3983	0.72	+0.8
4,012,878	+		GFF3983	0.83	+0.2
4,012,912	+				-1.3
4,012,912	+				-3.0
4,012,912	+				+0.4
4,012,920	-				+0.1
4,012,920	-				-0.7
4,012,922	+				-0.3
4,012,922	+				-0.7
4,012,922	+				+1.3
4,012,930	-				+0.4
4,012,930	-				+0.7
4,012,930	-				-1.7
4,012,930	-				-1.0
4,012,937	+				-1.2
4,012,948	+				-1.3
4,012,978	+				-2.3
4,012,981	-				+0.7
4,012,981	-				-1.7
4,012,981	-				+1.1
4,012,981	-				+1.1
4,012,986	-				-1.6
4,012,986	-				-1.1
4,012,999	+				+0.6
4,013,029	-		GFF3984	0.11	-2.4
4,013,091	+		GFF3984	0.24	-0.8
4,013,091	+		GFF3984	0.24	+0.7
4,013,156	+		GFF3984	0.39	-1.6
4,013,162	+		GFF3984	0.40	+0.3
4,013,162	+		GFF3984	0.40	-0.4
4,013,162	+		GFF3984	0.40	+0.4
4,013,162	+		GFF3984	0.40	-1.3
4,013,162	+		GFF3984	0.40	-1.0
4,013,164	-		GFF3984	0.41	+0.0
4,013,170	-		GFF3984	0.42	-0.7
4,013,170	-		GFF3984	0.42	-1.0
4,013,206	+		GFF3984	0.50	+0.2
4,013,277	-		GFF3984	0.66	+0.4
4,013,308	-		GFF3984	0.73	+0.7
4,013,309	+		GFF3984	0.73	-0.8
4,013,312	+		GFF3984	0.74	+1.3
4,013,319	+		GFF3984	0.75	+0.3
4,013,327	-		GFF3984	0.77	-0.7
4,013,327	-		GFF3984	0.77	-0.3
4,013,327	-		GFF3984	0.77	-0.6
4,013,327	-		GFF3984	0.77	+0.6
4,013,348	-		GFF3984	0.82	-1.3
4,013,365	-		GFF3984	0.85	-1.6
4,013,365	-		GFF3984	0.85	-0.3
4,013,365	-		GFF3984	0.85	+0.5
4,013,374	-		GFF3984	0.87	+0.4
4,013,376	+		GFF3984	0.88	-0.6
4,013,376	+		GFF3984	0.88	+0.4
4,013,376	+		GFF3984	0.88	-0.1
4,013,376	+		GFF3984	0.88	-0.3
4,013,376	+		GFF3984	0.88	-0.0
4,013,376	+		GFF3984	0.88	+0.6
4,013,376	+		GFF3984	0.88	+0.4
4,013,384	-		GFF3984	0.90	-0.3
4,013,384	-		GFF3984	0.90	+0.7
4,013,384	-		GFF3984	0.90	+0.5
4,013,385	-		GFF3984	0.90	+0.3
4,013,391	+				+0.4
4,013,391	+				+0.8
4,013,391	-				+0.6
4,013,391	-				-0.2
4,013,399	-				+0.2
4,013,399	-				-0.5
4,013,399	-				+0.3
4,013,399	-				+0.1
4,013,399	-				-0.9
4,013,430	+				+0.2
4,013,438	-				+0.1
4,013,440	+				+0.2
4,013,440	+				-0.5
4,013,440	+				-1.5
4,013,440	+				-1.0
4,013,448	-				-1.4
4,013,448	-				-0.5
4,013,448	-				-0.3
4,013,448	-				-1.9
4,013,448	-				+0.4
4,013,448	-				-0.3
4,013,448	-				-0.6
4,013,448	-				-0.4
4,013,457	+				-0.2
4,013,457	+				+0.1
4,013,464	-				-2.2
4,013,467	+				-0.2
4,013,486	+				+0.5
4,013,486	+				-1.2
4,013,494	-				+0.6
4,013,499	+				+1.1
4,013,501	-				-0.2
4,013,516	+		GFF3985	0.10	+0.4
4,013,528	-		GFF3985	0.12	+0.6
4,013,530	+		GFF3985	0.12	-0.9
4,013,538	-		GFF3985	0.13	-0.1
4,013,540	-		GFF3985	0.13	+0.7
4,013,542	+		GFF3985	0.13	-1.1
4,013,547	+		GFF3985	0.14	+0.1
4,013,547	-		GFF3985	0.14	-1.0
4,013,550	-		GFF3985	0.15	-1.1
4,013,550	-		GFF3985	0.15	+0.5
4,013,550	-		GFF3985	0.15	-1.2
4,013,552	+		GFF3985	0.15	+0.0
4,013,552	+		GFF3985	0.15	+0.9
4,013,552	+		GFF3985	0.15	-1.6
4,013,552	+		GFF3985	0.15	-0.8
4,013,552	+		GFF3985	0.15	-0.4
4,013,552	+		GFF3985	0.15	-0.6
4,013,552	+		GFF3985	0.15	+0.1
4,013,552	+		GFF3985	0.15	+1.2
4,013,555	-		GFF3985	0.15	+0.3
4,013,555	-		GFF3985	0.15	+0.2
4,013,555	-		GFF3985	0.15	+0.7
4,013,560	-		GFF3985	0.16	-2.5
4,013,560	-		GFF3985	0.16	-0.3
4,013,560	-		GFF3985	0.16	-1.3
4,013,560	-		GFF3985	0.16	+0.3
4,013,560	-		GFF3985	0.16	-0.4
4,013,560	-		GFF3985	0.16	+1.0
4,013,560	-		GFF3985	0.16	-1.3
4,013,560	-		GFF3985	0.16	-1.6
4,013,560	-		GFF3985	0.16	+1.4
4,013,560	-		GFF3985	0.16	-1.4
4,013,608	+		GFF3985	0.22	-0.9
4,013,634	+		GFF3985	0.26	+0.3
4,013,634	-		GFF3985	0.26	-1.7
4,013,642	-		GFF3985	0.27	+0.7
4,013,649	-		GFF3985	0.28	-1.7
4,013,689	+		GFF3985	0.33	-0.8
4,013,689	+		GFF3985	0.33	+0.0
4,013,689	+		GFF3985	0.33	-1.9
4,013,694	+		GFF3985	0.34	-2.5
4,013,701	+		GFF3985	0.35	+1.3
4,013,709	-		GFF3985	0.36	-2.4
4,013,709	-		GFF3985	0.36	+0.3
4,013,714	-		GFF3985	0.37	-0.3
4,013,719	-		GFF3985	0.37	-0.5
4,013,725	+		GFF3985	0.38	-1.1
4,013,743	+		GFF3985	0.41	-0.1
4,013,743	-		GFF3985	0.41	+0.8
4,013,743	-		GFF3985	0.41	-1.4
4,013,750	+		GFF3985	0.42	+0.0
4,013,781	-		GFF3985	0.46	-0.3
4,013,781	-		GFF3985	0.46	-1.4
4,013,784	+		GFF3985	0.46	-1.0
4,013,789	+		GFF3985	0.47	-0.5
4,013,792	-		GFF3985	0.47	-1.0
4,013,792	-		GFF3985	0.47	+0.3
4,013,792	-		GFF3985	0.47	+0.9
4,013,792	-		GFF3985	0.47	+0.6
4,013,797	-		GFF3985	0.48	-1.1
4,013,804	-		GFF3985	0.49	-0.8
4,013,810	-		GFF3985	0.50	-0.3
4,013,820	-		GFF3985	0.51	+1.1
4,013,837	+		GFF3985	0.53	-0.2
4,013,845	-		GFF3985	0.54	+0.3
4,013,851	+		GFF3985	0.55	+0.8
4,013,851	+		GFF3985	0.55	+1.5
4,013,851	+		GFF3985	0.55	-0.4
4,013,851	+		GFF3985	0.55	+0.6
4,013,851	+		GFF3985	0.55	-1.6
4,013,851	+		GFF3985	0.55	+0.3
4,013,851	+		GFF3985	0.55	-0.2
4,013,851	+		GFF3985	0.55	-2.0
4,013,851	+		GFF3985	0.55	-1.3
4,013,851	+		GFF3985	0.55	-0.3
4,013,851	+		GFF3985	0.55	+0.1
4,013,851	+		GFF3985	0.55	-0.7
4,013,851	+		GFF3985	0.55	+0.2
4,013,851	+		GFF3985	0.55	-0.4
4,013,856	+		GFF3985	0.56	-0.5
4,013,859	-		GFF3985	0.56	-1.6
4,013,859	-		GFF3985	0.56	-1.0
4,013,859	-		GFF3985	0.56	-0.7
4,013,859	-		GFF3985	0.56	-0.2
4,013,859	-		GFF3985	0.56	+0.3
4,013,859	-		GFF3985	0.56	-2.0
4,013,859	-		GFF3985	0.56	-1.3
4,013,869	-		GFF3985	0.58	+0.1
4,013,894	-		GFF3985	0.61	+1.6
4,013,894	-		GFF3985	0.61	-0.3
4,013,925	-		GFF3985	0.65	+0.9
4,013,934	+		GFF3985	0.66	-0.6
4,013,942	-		GFF3985	0.67	+1.4
4,013,942	-		GFF3985	0.67	+0.6
4,013,942	-		GFF3985	0.67	+1.3
4,013,942	-		GFF3985	0.67	-0.9
4,013,946	+		GFF3985	0.68	+0.4
4,013,946	+		GFF3985	0.68	+0.6
4,013,946	+		GFF3985	0.68	-0.3
4,013,949	-		GFF3985	0.68	+0.4
4,013,956	+		GFF3985	0.69	-0.0
4,013,961	+		GFF3985	0.70	-2.3
4,013,961	+		GFF3985	0.70	-1.3
4,013,961	+		GFF3985	0.70	+0.7
4,013,961	+		GFF3985	0.70	+0.2
4,013,961	+		GFF3985	0.70	+0.1
4,013,964	-		GFF3985	0.70	-1.4
4,013,969	-		GFF3985	0.71	+0.4
4,013,969	-		GFF3985	0.71	-1.6
4,013,969	-		GFF3985	0.71	-2.6
4,013,969	-		GFF3985	0.71	+1.1
4,013,969	-		GFF3985	0.71	-0.9
4,013,971	+		GFF3985	0.71	-0.7
4,013,985	+		GFF3985	0.73	-0.2
4,013,985	+		GFF3985	0.73	-1.6
4,013,985	+		GFF3985	0.73	+0.8
4,013,985	+		GFF3985	0.73	-0.0
4,013,993	-		GFF3985	0.74	+0.1
4,013,993	-		GFF3985	0.74	-2.3
4,013,993	-		GFF3985	0.74	-0.2
4,014,003	+		GFF3985	0.76	+0.7
4,014,003	-		GFF3985	0.76	+0.5
4,014,003	-		GFF3985	0.76	-0.6
4,014,008	-		GFF3985	0.76	-0.4
4,014,044	-		GFF3985	0.81	-0.6
4,014,046	+		GFF3985	0.82	+0.9
4,014,049	-		GFF3985	0.82	+0.4
4,014,051	+		GFF3985	0.82	+0.3
4,014,056	+		GFF3985	0.83	-0.1
4,014,056	+		GFF3985	0.83	-0.7
4,014,056	+		GFF3985	0.83	-0.7
4,014,056	+		GFF3985	0.83	+1.5
4,014,059	-		GFF3985	0.83	-0.3
4,014,064	-		GFF3985	0.84	-0.4
4,014,064	-		GFF3985	0.84	-2.3
4,014,064	-		GFF3985	0.84	+0.1
4,014,064	-		GFF3985	0.84	-0.6
4,014,064	-		GFF3985	0.84	-0.4
4,014,064	-		GFF3985	0.84	+0.7
4,014,064	-		GFF3985	0.84	+0.7
4,014,064	-		GFF3985	0.84	-0.3
4,014,070	+		GFF3985	0.85	+1.3
4,014,070	+		GFF3985	0.85	-0.4
4,014,073	-		GFF3985	0.85	+0.1
4,014,073	-		GFF3985	0.85	+1.6
4,014,080	+		GFF3985	0.86	-0.9
4,014,083	-		GFF3985	0.87	-0.7
4,014,090	-		GFF3985	0.87	-0.1
4,014,090	-		GFF3985	0.87	-0.1
4,014,090	-		GFF3985	0.87	+1.8
4,014,090	-		GFF3985	0.87	+0.4
4,014,090	-		GFF3985	0.87	-1.3
4,014,101	-		GFF3985	0.89	+0.6
4,014,134	+				+0.1
4,014,134	+				-0.2
4,014,134	+				-1.3
4,014,134	+				+0.4
4,014,142	-				-1.2
4,014,142	-				-3.3
4,014,142	-				-0.5
4,014,207	+				-0.1
4,014,207	+				+0.5
4,014,215	-		GFF3986	0.11	-1.3
4,014,234	-		GFF3986	0.18	-1.2
4,014,236	+		GFF3986	0.18	+0.9
4,014,236	+		GFF3986	0.18	+0.6
4,014,241	+		GFF3986	0.20	-0.3
4,014,241	+		GFF3986	0.20	-0.7
4,014,241	+		GFF3986	0.20	-0.3
4,014,242	-		GFF3986	0.21	-0.1
4,014,244	-		GFF3986	0.21	-0.6
4,014,244	-		GFF3986	0.21	-1.2
4,014,248	+		GFF3986	0.23	-0.3
4,014,248	+		GFF3986	0.23	+0.0
4,014,256	-		GFF3986	0.26	-0.7
4,014,256	-		GFF3986	0.26	-0.7
4,014,276	-		GFF3986	0.33	+1.6
4,014,287	+		GFF3986	0.37	-0.5
4,014,296	+		GFF3986	0.40	+0.0
4,014,296	+		GFF3986	0.40	-0.4
4,014,296	+		GFF3986	0.40	-1.0
4,014,296	+		GFF3986	0.40	+0.2
4,014,296	+		GFF3986	0.40	+0.9
4,014,296	+		GFF3986	0.40	-0.4
4,014,304	-		GFF3986	0.43	+0.1
4,014,304	-		GFF3986	0.43	-0.3
4,014,304	-		GFF3986	0.43	-0.6
4,014,331	-		GFF3986	0.52	+0.7
4,014,331	-		GFF3986	0.52	+0.6
4,014,334	+		GFF3986	0.53	-1.4
4,014,347	-		GFF3986	0.58	+1.6
4,014,348	-		GFF3986	0.58	-0.1
4,014,350	-		GFF3986	0.59	-0.2
4,014,378	-		GFF3986	0.69	-1.3
4,014,378	-		GFF3986	0.69	-0.6
4,014,393	-		GFF3986	0.74	-0.7
4,014,395	+		GFF3986	0.75	+0.2
4,014,403	+		GFF3986	0.78	-0.2
4,014,406	+		GFF3986	0.79	-0.3
4,014,414	+		GFF3986	0.82	-0.2
4,014,425	+		GFF3986	0.85	-1.7
4,014,425	+		GFF3986	0.85	-0.3
4,014,425	+		GFF3986	0.85	+0.1
4,014,437	+				+1.6
4,014,439	+				-0.3
4,014,463	+				-0.7
4,014,463	+				-0.3
4,014,476	-				-2.7
4,014,501	-				-0.9
4,014,521	-				+1.3
4,014,523	+				-1.3
4,014,523	+				-0.7
4,014,523	+				+0.3
4,014,531	-				-0.1
4,014,535	-				+0.3
4,014,535	-				+0.8
4,014,536	-				-0.8
4,014,537	+				-0.9
4,014,545	-				-2.1
4,014,551	-				+1.1
4,014,556	-				-1.7
4,014,556	-				+0.1
4,014,566	+				+0.3
4,014,583	+				+0.4
4,014,584	+				+0.5
4,014,591	-				-1.7
4,014,625	+				+0.6
4,014,633	-				+0.9
4,014,633	-				-0.4
4,014,651	+				+0.3
4,014,653	-				-0.2
4,014,659	-				-0.7
4,014,671	+				-0.1
4,014,671	+				+0.1
4,014,679	-				-2.0
4,014,695	+				-2.3
4,014,708	+				-0.4
4,014,708	+				+1.1
4,014,708	+				+0.3
4,014,708	+				+0.0
4,014,711	-				-0.7
4,014,713	+				+0.9
4,014,716	-				+0.3
4,014,716	-				-1.4
4,014,716	-				+0.7
4,014,716	-				-1.1
4,014,716	-				-1.0
4,014,716	-				-0.8
4,014,716	-				+0.8
4,014,716	-				+0.5
4,014,747	-				+0.3
4,014,769	+				-1.1
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4,014,769	+				+0.8
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4,014,769	+				+0.4
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4,014,769	+				+0.9
4,014,769	+				-0.8
4,014,769	+				+0.0
4,014,769	+				-0.4
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4,014,771	+				+0.3
4,014,777	-				+0.0
4,014,777	-				+0.5
4,014,777	-				-0.2
4,014,777	-				-2.0
4,014,777	-				-1.4
4,014,777	-				-0.2
4,014,777	-				+1.2
4,014,777	-				-0.7
4,014,777	-				+0.6
4,014,777	-				+0.8
4,014,777	-				+0.1
4,014,777	-				+0.3
4,014,777	-				-0.2
4,014,777	-				-1.2
4,014,777	-				+0.2
4,014,779	-				+0.4
4,014,799	+				+2.1
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4,014,801	+				-0.0
4,014,836	+				+0.3
4,014,844	+				+1.3
4,014,844	+				+0.3
4,014,849	-				+0.6
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4,014,917	+				-2.3
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4,014,917	+				+0.3
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4,014,917	+				+0.5
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4,014,925	-				-0.1
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4,014,977	+		GFF3987	0.10	-0.3
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4,015,027	+		GFF3987	0.11	-1.1
4,015,027	+		GFF3987	0.11	-0.7
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4,015,035	-		GFF3987	0.12	-1.7
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4,015,035	-		GFF3987	0.12	+0.0
4,015,035	-		GFF3987	0.12	-1.0
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4,015,038	+		GFF3987	0.12	-1.7
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4,015,044	-		GFF3987	0.12	+0.3
4,015,045	-		GFF3987	0.12	-1.7
4,015,046	-		GFF3987	0.12	-0.7
4,015,055	+		GFF3987	0.12	-0.6
4,015,067	-		GFF3987	0.12	-0.7
4,015,091	-		GFF3987	0.13	-0.9
4,015,100	+		GFF3987	0.13	-1.4
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4,015,174	+		GFF3987	0.14	+0.8
4,015,182	-		GFF3987	0.15	+0.6