Strain Fitness in Sphingobium sp. HT1-2 around GFF3931

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,968,530	+		GFF3929	0.61	-0.2
3,968,671	-		GFF3929	0.72	-0.6
3,968,744	-		GFF3929	0.78	+1.1
3,968,760	-		GFF3929	0.79	-0.4
3,968,767	+		GFF3929	0.80	-0.2
3,968,772	+		GFF3929	0.80	-0.9
3,968,828	-		GFF3929	0.84	-1.6
3,969,026	-				-1.1
3,969,060	+				-0.0
3,969,062	+				+0.3
3,969,067	+				-0.1
3,969,070	-				-1.2
3,969,140	-		GFF3930	0.27	-2.4
3,969,150	-		GFF3930	0.29	-1.1
3,969,190	+		GFF3930	0.39	-0.2
3,969,193	+		GFF3930	0.40	-0.4
3,969,215	+		GFF3930	0.45	+0.8
3,969,215	+		GFF3930	0.45	-0.6
3,969,215	+		GFF3930	0.45	+0.7
3,969,215	+		GFF3930	0.45	-0.1
3,969,218	-		GFF3930	0.46	-0.2
3,969,222	+		GFF3930	0.47	+1.2
3,969,223	-		GFF3930	0.47	-0.4
3,969,223	-		GFF3930	0.47	-2.2
3,969,223	-		GFF3930	0.47	-0.5
3,969,223	-		GFF3930	0.47	+0.3
3,969,223	-		GFF3930	0.47	-1.1
3,969,223	-		GFF3930	0.47	-2.4
3,969,223	-		GFF3930	0.47	-1.1
3,969,223	-		GFF3930	0.47	-0.6
3,969,223	-		GFF3930	0.47	-1.6
3,969,223	-		GFF3930	0.47	+0.1
3,969,223	-		GFF3930	0.47	-2.4
3,969,255	+		GFF3930	0.55	+0.5
3,969,255	-		GFF3930	0.55	+0.9
3,969,263	-		GFF3930	0.57	-1.9
3,969,285	-		GFF3930	0.63	+0.6
3,969,300	-		GFF3930	0.66	-1.7
3,969,300	-		GFF3930	0.66	-1.3
3,969,310	-		GFF3930	0.69	-1.1
3,969,346	-		GFF3930	0.78	+0.7
3,969,366	+		GFF3930	0.83	+0.4
3,969,366	+		GFF3930	0.83	+0.1
3,969,366	+		GFF3930	0.83	-1.9
3,969,374	-		GFF3930	0.85	-2.2
3,969,374	-		GFF3930	0.85	+0.2
3,969,374	-		GFF3930	0.85	-1.1
3,969,374	-		GFF3930	0.85	+0.4
3,969,374	-		GFF3930	0.85	-1.3
3,969,409	-				-2.6
3,969,437	-				+0.2
3,969,454	-				-1.1
3,969,454	-				-0.7
3,969,454	-				-1.2
3,969,700	+		GFF3931	0.16	+0.8
3,969,722	+		GFF3931	0.17	+0.1
3,969,732	-		GFF3931	0.18	-1.1
3,969,775	+		GFF3931	0.21	-1.0
3,969,840	-		GFF3931	0.26	-1.1
3,969,840	-		GFF3931	0.26	-1.7
3,969,884	-		GFF3931	0.29	-1.0
3,969,891	-		GFF3931	0.29	-0.6
3,969,891	-		GFF3931	0.29	-2.6
3,970,070	+		GFF3931	0.42	-0.6
3,970,095	-		GFF3931	0.44	-0.4
3,970,101	-		GFF3931	0.44	-0.9
3,970,153	+		GFF3931	0.48	-1.8
3,970,153	+		GFF3931	0.48	-1.9
3,970,153	+		GFF3931	0.48	+0.1
3,970,161	-		GFF3931	0.48	-1.5
3,970,161	-		GFF3931	0.48	-1.1
3,970,161	-		GFF3931	0.48	-1.7
3,970,173	-		GFF3931	0.49	+0.1
3,970,243	+		GFF3931	0.54	+1.1
3,970,319	-		GFF3931	0.60	+0.1
3,970,358	+		GFF3931	0.62	-0.9
3,970,359	-		GFF3931	0.62	+0.0
3,970,397	-		GFF3931	0.65	-2.1
3,970,462	+		GFF3931	0.70	+0.4
3,970,463	+		GFF3931	0.70	-1.5
3,970,463	+		GFF3931	0.70	-0.6
3,970,522	+		GFF3931	0.74	-0.2
3,970,596	-		GFF3931	0.79	-2.3
3,970,660	+		GFF3931	0.84	-1.1
3,970,660	+		GFF3931	0.84	-0.8
3,970,667	+		GFF3931	0.84	-1.8
3,970,668	-		GFF3931	0.84	-1.1
3,970,712	+		GFF3931	0.87	-2.1
3,970,757	-				+0.2
3,970,759	+				-1.2
3,970,759	+				-1.2
3,970,759	+				+0.1
3,970,762	-				-0.1
3,970,762	-				+0.4
3,970,767	-				-1.5
3,970,814	+				-0.9
3,970,825	+				+1.0
3,970,888	-				+0.1
3,970,888	-				-1.9
3,970,888	-				-0.9
3,970,982	+		GFF3932	0.10	-1.3
3,971,009	+		GFF3932	0.15	-0.6
3,971,014	+		GFF3932	0.15	+0.7
3,971,014	+		GFF3932	0.15	-0.3
3,971,014	+		GFF3932	0.15	-0.6
3,971,022	-		GFF3932	0.17	-2.1
3,971,022	-		GFF3932	0.17	+0.5
3,971,035	-		GFF3932	0.19	-1.8
3,971,040	-		GFF3932	0.20	-0.4
3,971,135	+		GFF3932	0.36	-0.1
3,971,135	+		GFF3932	0.36	-0.2
3,971,135	+		GFF3932	0.36	+0.3
3,971,135	+		GFF3932	0.36	+0.8
3,971,135	+		GFF3932	0.36	-0.7
3,971,135	+		GFF3932	0.36	-1.3
3,971,143	-		GFF3932	0.37	-0.1
3,971,143	-		GFF3932	0.37	+0.2
3,971,143	-		GFF3932	0.37	+0.9
3,971,160	+		GFF3932	0.40	+1.2
3,971,185	-		GFF3932	0.45	-3.1
3,971,198	+		GFF3932	0.47	+0.2
3,971,198	+		GFF3932	0.47	+0.3
3,971,206	-		GFF3932	0.48	+0.8
3,971,206	-		GFF3932	0.48	-0.8
3,971,206	-		GFF3932	0.48	+0.6
3,971,209	+		GFF3932	0.49	-1.4
3,971,211	-		GFF3932	0.49	-0.1
3,971,227	-		GFF3932	0.52	-0.2
3,971,231	+		GFF3932	0.52	+0.1
3,971,236	+		GFF3932	0.53	-0.9
3,971,240	-		GFF3932	0.54	+0.2
3,971,242	+		GFF3932	0.54	-0.0
3,971,270	+		GFF3932	0.59	-0.2
3,971,272	+		GFF3932	0.59	-0.8
3,971,272	+		GFF3932	0.59	-0.1
3,971,273	-		GFF3932	0.60	-0.2
3,971,303	+		GFF3932	0.65	-1.2
3,971,312	+		GFF3932	0.66	+0.2
3,971,345	+		GFF3932	0.72	+0.9
3,971,345	+		GFF3932	0.72	-0.0
3,971,345	+		GFF3932	0.72	-1.6
3,971,345	+		GFF3932	0.72	+0.0
3,971,345	+		GFF3932	0.72	-0.6
3,971,353	-		GFF3932	0.73	+0.7
3,971,353	-		GFF3932	0.73	+1.9
3,971,398	+		GFF3932	0.81	-1.3
3,971,406	-		GFF3932	0.82	+1.3
3,971,406	-		GFF3932	0.82	-1.3
3,971,406	-		GFF3932	0.82	+0.2
3,971,406	-		GFF3932	0.82	+0.5
3,971,406	-		GFF3932	0.82	+0.3
3,971,410	-		GFF3932	0.83	-0.6
3,971,424	+		GFF3932	0.85	+1.4
3,971,427	-		GFF3932	0.86	-1.3
3,971,427	-		GFF3932	0.86	+0.1
3,971,435	+		GFF3932	0.87	-0.2
3,971,443	+		GFF3932	0.88	-0.9
3,971,451	-		GFF3932	0.90	-0.7
3,971,461	+				+0.8
3,971,461	+				-0.2
3,971,461	+				-0.5
3,971,461	+				-0.4
3,971,461	+				-1.5
3,971,461	+				-0.6
3,971,461	+				+0.1
3,971,461	+				+0.3
3,971,461	+				-0.7
3,971,461	+				-1.1
3,971,461	+				+0.4
3,971,461	+				-0.8
3,971,461	+				+0.5
3,971,461	+				-1.4
3,971,461	+				-1.0
3,971,461	+				-0.4
3,971,461	+				+0.5
3,971,461	+				-0.5
3,971,461	+				-0.6
3,971,461	+				+1.1
3,971,461	+				-0.1
3,971,461	+				-0.0
3,971,461	+				-1.4
3,971,464	-				-0.2
3,971,469	-				-0.3
3,971,469	-				-0.4
3,971,469	-				+0.5
3,971,469	-				-0.6
3,971,469	-				+1.8
3,971,469	-				-0.7
3,971,469	-				+0.3
3,971,469	-				-0.5
3,971,469	-				+0.6
3,971,469	-				-0.6
3,971,469	-				+1.1
3,971,469	-				-0.7
3,971,469	-				-1.4
3,971,469	-				-2.2
3,971,469	-				-1.2
3,971,469	-				-0.4
3,971,469	-				-0.2
3,971,469	-				+0.6
3,971,469	-				-0.5
3,971,469	-				+2.4
3,971,469	-				+1.1
3,971,469	-				-0.8
3,971,469	-				-0.2
3,971,469	-				-0.5
3,971,469	-				-0.5
3,971,469	-				+1.2
3,971,469	-				+0.1
3,971,469	-				-2.5
3,971,471	-				-0.7
3,971,471	-				+1.0
3,971,471	-				-1.1
3,971,485	-				-1.8
3,971,486	-				+1.5
3,971,506	+				-0.0
3,971,507	-				+0.4
3,971,512	-				-0.7
3,971,526	+				+0.9
3,971,529	-				-0.5
3,971,569	+				+0.8
3,971,572	+				-0.3
3,971,599	+				+1.1
3,971,609	-				+0.5
3,971,612	-				+0.5
3,971,617	-				-1.4
3,971,617	-				+0.3
3,971,617	-				-0.4
3,971,623	-				-1.5
3,971,644	-		GFF3933	0.11	+1.9
3,971,644	-		GFF3933	0.11	-0.9
3,971,726	-		GFF3933	0.17	+0.2
3,971,775	+		GFF3933	0.20	-2.6
3,971,804	+		GFF3933	0.22	-0.0
3,971,814	-		GFF3933	0.23	+0.1
3,971,825	+		GFF3933	0.24	-1.1
3,971,827	-		GFF3933	0.24	+0.3
3,971,828	-		GFF3933	0.24	-1.6
3,971,837	+		GFF3933	0.24	-1.5
3,971,847	+		GFF3933	0.25	-0.5
3,971,855	-		GFF3933	0.26	-1.2
3,971,855	-		GFF3933	0.26	-1.9
3,971,876	+		GFF3933	0.27	+0.8
3,971,878	+		GFF3933	0.27	+1.4
3,971,884	+		GFF3933	0.28	+0.4
3,971,884	-		GFF3933	0.28	-1.1
3,971,884	-		GFF3933	0.28	+0.3
3,971,884	-		GFF3933	0.28	+0.8