Strain Fitness in Sphingobium sp. HT1-2 around GFF3926

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,964,823	-		GFF3925	0.16	+1.0
3,964,858	-		GFF3925	0.19	+0.0
3,964,871	-		GFF3925	0.20	+0.4
3,964,871	-		GFF3925	0.20	+0.5
3,964,914	+		GFF3925	0.23	-0.1
3,964,940	+		GFF3925	0.26	-0.4
3,964,971	+		GFF3925	0.28	+0.9
3,964,978	+		GFF3925	0.29	+0.0
3,964,993	-		GFF3925	0.30	-0.4
3,964,999	+		GFF3925	0.31	+0.4
3,965,051	-		GFF3925	0.35	-1.1
3,965,062	-		GFF3925	0.36	+0.9
3,965,084	+		GFF3925	0.38	-2.4
3,965,084	+		GFF3925	0.38	+0.2
3,965,109	+		GFF3925	0.40	-0.3
3,965,117	-		GFF3925	0.41	+0.4
3,965,124	+		GFF3925	0.41	-0.9
3,965,124	+		GFF3925	0.41	-1.3
3,965,124	+		GFF3925	0.41	+0.0
3,965,124	+		GFF3925	0.41	+0.5
3,965,124	+		GFF3925	0.41	-0.7
3,965,124	+		GFF3925	0.41	+0.5
3,965,132	-		GFF3925	0.42	+0.0
3,965,132	-		GFF3925	0.42	+1.1
3,965,134	+		GFF3925	0.42	-1.7
3,965,142	-		GFF3925	0.43	+0.6
3,965,142	-		GFF3925	0.43	-0.5
3,965,198	+		GFF3925	0.47	-1.2
3,965,216	-		GFF3925	0.49	-0.8
3,965,269	+		GFF3925	0.53	-0.5
3,965,300	-		GFF3925	0.56	-0.4
3,965,308	-		GFF3925	0.57	+0.3
3,965,333	+		GFF3925	0.59	+0.3
3,965,333	+		GFF3925	0.59	-0.4
3,965,333	+		GFF3925	0.59	-0.3
3,965,337	-		GFF3925	0.59	+1.1
3,965,341	-		GFF3925	0.59	-0.4
3,965,341	-		GFF3925	0.59	-0.2
3,965,341	-		GFF3925	0.59	+1.0
3,965,346	-		GFF3925	0.60	+1.2
3,965,346	-		GFF3925	0.60	+0.7
3,965,371	-		GFF3925	0.62	+0.3
3,965,392	+		GFF3925	0.64	-1.7
3,965,392	+		GFF3925	0.64	+0.0
3,965,393	-		GFF3925	0.64	+0.7
3,965,395	-		GFF3925	0.64	-1.6
3,965,400	-		GFF3925	0.64	-1.4
3,965,400	-		GFF3925	0.64	-0.9
3,965,410	-		GFF3925	0.65	+0.7
3,965,410	-		GFF3925	0.65	-0.8
3,965,410	-		GFF3925	0.65	+0.6
3,965,410	-		GFF3925	0.65	-0.3
3,965,410	-		GFF3925	0.65	+0.8
3,965,421	-		GFF3925	0.66	-1.2
3,965,424	+		GFF3925	0.66	+1.1
3,965,425	+		GFF3925	0.66	-0.4
3,965,433	-		GFF3925	0.67	+0.7
3,965,433	-		GFF3925	0.67	-1.1
3,965,433	-		GFF3925	0.67	-0.4
3,965,435	+		GFF3925	0.67	+0.4
3,965,435	+		GFF3925	0.67	+0.2
3,965,443	-		GFF3925	0.68	+1.0
3,965,443	-		GFF3925	0.68	-0.3
3,965,467	+		GFF3925	0.70	-0.8
3,965,520	+		GFF3925	0.74	+1.2
3,965,566	-		GFF3925	0.78	+0.4
3,965,566	-		GFF3925	0.78	+0.6
3,965,574	-		GFF3925	0.79	+0.3
3,965,585	-		GFF3925	0.80	+0.9
3,965,597	+		GFF3925	0.81	-0.1
3,965,619	+		GFF3925	0.83	-1.0
3,965,619	+		GFF3925	0.83	+0.6
3,965,619	+		GFF3925	0.83	-0.5
3,965,619	+		GFF3925	0.83	-0.7
3,965,619	+		GFF3925	0.83	+1.1
3,965,627	-		GFF3925	0.84	+0.8
3,965,627	-		GFF3925	0.84	+0.8
3,965,629	+		GFF3925	0.84	+0.6
3,965,633	+		GFF3925	0.84	-0.2
3,965,633	+		GFF3925	0.84	-1.1
3,965,641	-		GFF3925	0.85	-1.1
3,965,665	+		GFF3925	0.87	+0.4
3,965,665	+		GFF3925	0.87	+0.1
3,965,673	-		GFF3925	0.87	-0.0
3,965,673	-		GFF3925	0.87	+1.4
3,965,673	-		GFF3925	0.87	-0.3
3,965,679	+		GFF3925	0.88	-2.6
3,965,683	-		GFF3925	0.88	+1.0
3,965,684	+		GFF3925	0.88	+0.4
3,965,687	-		GFF3925	0.89	-0.1
3,965,692	-		GFF3925	0.89	+0.0
3,965,692	-		GFF3925	0.89	+0.6
3,965,711	-				-0.4
3,965,717	+				-1.1
3,965,717	+				-0.0
3,965,755	+				-1.1
3,965,755	+				-0.4
3,965,763	-				-1.2
3,965,772	+				+0.3
3,965,772	+				-0.1
3,965,780	-				+1.5
3,965,817	+				-2.9
3,965,817	+				-0.5
3,965,817	+				+0.5
3,965,817	+				-0.1
3,965,817	+				-0.6
3,965,825	-				-1.3
3,965,825	-				-0.1
3,965,825	-				+1.1
3,965,832	+				-1.2
3,965,835	-				-0.4
3,965,835	-				-0.1
3,965,840	-				-0.4
3,965,874	+				+0.4
3,965,883	-				-1.5
3,965,883	-				-0.4
3,965,885	+				-1.0
3,965,908	+		GFF3926	0.11	+0.1
3,965,934	-		GFF3926	0.14	-0.4
3,965,936	-		GFF3926	0.14	-0.2
3,965,941	-		GFF3926	0.15	+0.7
3,965,951	-		GFF3926	0.16	+0.2
3,965,976	-		GFF3926	0.19	+0.9
3,965,987	-		GFF3926	0.20	-0.7
3,966,009	-		GFF3926	0.23	+0.2
3,966,039	+		GFF3926	0.26	+0.4
3,966,039	+		GFF3926	0.26	-0.8
3,966,039	+		GFF3926	0.26	-1.2
3,966,039	-		GFF3926	0.26	+0.2
3,966,069	+		GFF3926	0.30	+0.2
3,966,069	+		GFF3926	0.30	+0.6
3,966,069	+		GFF3926	0.30	-0.2
3,966,069	+		GFF3926	0.30	+0.2
3,966,077	-		GFF3926	0.31	+0.7
3,966,077	-		GFF3926	0.31	+0.1
3,966,102	+		GFF3926	0.34	+0.2
3,966,183	+		GFF3926	0.43	-0.2
3,966,215	-		GFF3926	0.47	+0.4
3,966,237	+		GFF3926	0.50	+0.3
3,966,247	+		GFF3926	0.51	+0.3
3,966,247	+		GFF3926	0.51	-1.3
3,966,255	-		GFF3926	0.52	+0.5
3,966,264	-		GFF3926	0.53	+0.3
3,966,281	+		GFF3926	0.55	-1.1
3,966,287	-		GFF3926	0.56	+0.2
3,966,295	+		GFF3926	0.57	+1.5
3,966,295	+		GFF3926	0.57	-1.9
3,966,295	+		GFF3926	0.57	+0.1
3,966,295	+		GFF3926	0.57	+1.0
3,966,303	-		GFF3926	0.58	+1.2
3,966,337	-		GFF3926	0.62	+0.1
3,966,350	-		GFF3926	0.63	-1.7
3,966,355	-		GFF3926	0.64	-1.4
3,966,358	+		GFF3926	0.64	-1.1
3,966,394	-		GFF3926	0.69	-0.3
3,966,399	-		GFF3926	0.69	+1.2
3,966,410	+		GFF3926	0.71	+0.6
3,966,410	+		GFF3926	0.71	-0.5
3,966,410	+		GFF3926	0.71	+0.2
3,966,410	+		GFF3926	0.71	-0.6
3,966,410	+		GFF3926	0.71	+0.7
3,966,418	-		GFF3926	0.72	-1.2
3,966,418	-		GFF3926	0.72	-1.0
3,966,418	-		GFF3926	0.72	+0.7
3,966,544	+		GFF3926	0.87	-1.1
3,966,552	+		GFF3926	0.88	-1.2
3,966,555	-		GFF3926	0.88	-0.5
3,966,579	-				+1.5
3,966,589	-				-1.9
3,966,589	-				-1.3
3,966,594	+				-0.5
3,966,597	-				+1.5
3,966,602	+				+0.8
3,966,602	-				-1.0
3,966,607	+				-0.7
3,966,610	-				-1.9
3,966,617	+				+0.5
3,966,617	+				-0.3
3,966,625	+				-0.9
3,966,625	-				+0.0
3,966,630	+				-0.2
3,966,633	-				-0.5
3,966,638	-				+0.4
3,966,638	-				+1.9
3,966,648	-				+0.9
3,966,648	-				-1.1
3,966,708	+				-0.6
3,966,716	-				-0.3
3,966,899	+		GFF3927	0.72	-0.1
3,966,902	-		GFF3927	0.73	-0.3
3,966,904	+		GFF3927	0.74	-1.1
3,966,907	-		GFF3927	0.75	-0.5
3,966,911	+		GFF3927	0.76	-2.1
3,966,912	-		GFF3927	0.77	-0.0
3,966,912	-		GFF3927	0.77	-1.8
3,966,924	+		GFF3927	0.82	+0.4
3,966,926	+		GFF3927	0.83	-2.1
3,966,961	+				-0.9
3,966,969	-				-1.1
3,966,998	+				+0.4
3,967,006	-				-1.9
3,967,006	-				-0.8
3,967,013	-				-1.2
3,967,015	+				+1.7
3,967,062	+				-0.9
3,967,068	+				-0.8
3,967,068	+				+0.1
3,967,082	+				-0.8
3,967,083	-				-0.1
3,967,111	+				-2.1
3,967,158	+		GFF3928	0.16	-0.5
3,967,173	+		GFF3928	0.20	-3.0
3,967,181	-		GFF3928	0.21	-0.2
3,967,185	-		GFF3928	0.22	-0.3
3,967,192	+		GFF3928	0.24	-0.9
3,967,200	-		GFF3928	0.25	+0.3
3,967,214	+		GFF3928	0.29	+0.2
3,967,218	+		GFF3928	0.29	-0.9
3,967,219	+		GFF3928	0.30	+0.7
3,967,221	-		GFF3928	0.30	-0.6
3,967,221	-		GFF3928	0.30	-0.7
3,967,226	-		GFF3928	0.31	-1.2
3,967,227	-		GFF3928	0.31	-0.2
3,967,227	-		GFF3928	0.31	+0.5
3,967,258	+		GFF3928	0.38	+0.1
3,967,274	+		GFF3928	0.42	-1.6
3,967,290	+		GFF3928	0.45	+0.1
3,967,298	-		GFF3928	0.47	-2.4
3,967,298	-		GFF3928	0.47	+0.5
3,967,361	+		GFF3928	0.61	-1.8
3,967,370	+		GFF3928	0.63	-1.0
3,967,378	-		GFF3928	0.64	-0.9
3,967,378	-		GFF3928	0.64	+0.7
3,967,378	-		GFF3928	0.64	-0.7
3,967,444	+		GFF3928	0.79	+0.7
3,967,449	+		GFF3928	0.80	-0.0
3,967,581	+				-1.6
3,967,589	-				-2.1
3,967,633	-				+0.6
3,967,636	+				-1.3
3,967,649	+				-1.4