Strain Fitness in Sphingobium sp. HT1-2 around GFF3924

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,962,147	-				-0.8
3,962,156	+				-0.6
3,962,161	+				+0.4
3,962,185	-		GFF3923	0.10	-2.5
3,962,218	+		GFF3923	0.13	-1.3
3,962,218	+		GFF3923	0.13	+0.3
3,962,218	+		GFF3923	0.13	+0.4
3,962,218	+		GFF3923	0.13	+0.2
3,962,226	-		GFF3923	0.14	+0.0
3,962,235	+		GFF3923	0.15	+0.1
3,962,235	+		GFF3923	0.15	-1.2
3,962,238	-		GFF3923	0.15	-0.1
3,962,243	-		GFF3923	0.16	-1.8
3,962,243	-		GFF3923	0.16	-0.6
3,962,243	-		GFF3923	0.16	-0.1
3,962,251	+		GFF3923	0.17	+0.1
3,962,257	-		GFF3923	0.17	+0.0
3,962,259	-		GFF3923	0.17	+0.0
3,962,259	-		GFF3923	0.17	-1.2
3,962,259	-		GFF3923	0.17	+0.2
3,962,259	-		GFF3923	0.17	-0.2
3,962,259	-		GFF3923	0.17	+0.8
3,962,264	-		GFF3923	0.18	-0.8
3,962,327	-		GFF3923	0.24	-0.1
3,962,346	+		GFF3923	0.25	-0.1
3,962,357	-		GFF3923	0.26	+0.4
3,962,358	+		GFF3923	0.27	+0.4
3,962,395	+		GFF3923	0.30	+1.1
3,962,403	+		GFF3923	0.31	+1.8
3,962,407	-		GFF3923	0.31	+0.1
3,962,409	+		GFF3923	0.31	-1.3
3,962,409	+		GFF3923	0.31	-0.6
3,962,421	+		GFF3923	0.32	+0.1
3,962,421	+		GFF3923	0.32	-0.5
3,962,429	-		GFF3923	0.33	-2.0
3,962,438	-		GFF3923	0.34	+0.3
3,962,452	+		GFF3923	0.35	-1.6
3,962,457	+		GFF3923	0.36	-0.6
3,962,476	+		GFF3923	0.38	-1.2
3,962,476	+		GFF3923	0.38	-0.3
3,962,476	+		GFF3923	0.38	-0.1
3,962,476	+		GFF3923	0.38	-1.0
3,962,476	+		GFF3923	0.38	+1.8
3,962,476	+		GFF3923	0.38	-1.0
3,962,476	+		GFF3923	0.38	-0.7
3,962,476	+		GFF3923	0.38	-0.5
3,962,476	+		GFF3923	0.38	-0.2
3,962,481	+		GFF3923	0.38	+0.9
3,962,484	+		GFF3923	0.38	+0.8
3,962,484	-		GFF3923	0.38	-1.4
3,962,489	+		GFF3923	0.39	+0.2
3,962,489	-		GFF3923	0.39	-0.0
3,962,489	-		GFF3923	0.39	-0.0
3,962,494	+		GFF3923	0.39	-0.1
3,962,494	-		GFF3923	0.39	+0.3
3,962,494	-		GFF3923	0.39	-1.1
3,962,496	-		GFF3923	0.39	-1.7
3,962,513	+		GFF3923	0.41	-0.4
3,962,513	+		GFF3923	0.41	+2.2
3,962,513	+		GFF3923	0.41	-0.0
3,962,513	+		GFF3923	0.41	-1.6
3,962,513	+		GFF3923	0.41	-0.1
3,962,513	+		GFF3923	0.41	+0.4
3,962,513	+		GFF3923	0.41	+0.0
3,962,513	+		GFF3923	0.41	+0.4
3,962,513	+		GFF3923	0.41	-1.0
3,962,513	+		GFF3923	0.41	+0.4
3,962,513	+		GFF3923	0.41	-1.0
3,962,513	+		GFF3923	0.41	-0.4
3,962,513	+		GFF3923	0.41	+0.2
3,962,521	-		GFF3923	0.42	-0.7
3,962,521	-		GFF3923	0.42	-0.5
3,962,521	-		GFF3923	0.42	+0.4
3,962,521	-		GFF3923	0.42	+0.1
3,962,521	-		GFF3923	0.42	+0.4
3,962,521	-		GFF3923	0.42	-0.5
3,962,521	-		GFF3923	0.42	-3.0
3,962,521	-		GFF3923	0.42	+1.0
3,962,521	-		GFF3923	0.42	-0.3
3,962,521	-		GFF3923	0.42	+1.6
3,962,521	-		GFF3923	0.42	+0.6
3,962,521	-		GFF3923	0.42	+1.0
3,962,521	-		GFF3923	0.42	-1.2
3,962,521	-		GFF3923	0.42	-1.2
3,962,529	+		GFF3923	0.42	-0.3
3,962,529	+		GFF3923	0.42	-0.1
3,962,529	+		GFF3923	0.42	+0.8
3,962,532	-		GFF3923	0.43	+0.2
3,962,537	-		GFF3923	0.43	-0.1
3,962,537	-		GFF3923	0.43	+1.5
3,962,537	-		GFF3923	0.43	-1.1
3,962,537	-		GFF3923	0.43	-0.9
3,962,577	+		GFF3923	0.47	+1.1
3,962,586	+		GFF3923	0.48	-0.4
3,962,594	-		GFF3923	0.49	-1.0
3,962,599	-		GFF3923	0.49	-0.8
3,962,600	-		GFF3923	0.49	+0.3
3,962,609	+		GFF3923	0.50	+0.7
3,962,624	+		GFF3923	0.51	+0.3
3,962,624	+		GFF3923	0.51	+0.9
3,962,627	-		GFF3923	0.52	+0.3
3,962,632	-		GFF3923	0.52	+1.0
3,962,661	-		GFF3923	0.55	-1.3
3,962,682	+		GFF3923	0.57	-1.3
3,962,682	+		GFF3923	0.57	-1.3
3,962,688	+		GFF3923	0.57	+0.1
3,962,730	-		GFF3923	0.61	+0.7
3,962,737	+		GFF3923	0.62	-0.4
3,962,741	+		GFF3923	0.62	-0.2
3,962,745	+		GFF3923	0.63	+0.4
3,962,745	-		GFF3923	0.63	-1.7
3,962,753	-		GFF3923	0.63	-1.1
3,962,755	-		GFF3923	0.64	-0.2
3,962,756	+		GFF3923	0.64	-0.1
3,962,767	+		GFF3923	0.65	+0.3
3,962,770	-		GFF3923	0.65	-0.2
3,962,796	+		GFF3923	0.67	-1.4
3,962,811	+		GFF3923	0.69	+0.3
3,962,819	+		GFF3923	0.70	+0.0
3,962,819	-		GFF3923	0.70	-0.7
3,962,819	-		GFF3923	0.70	-0.8
3,962,874	-		GFF3923	0.75	-0.1
3,962,879	-		GFF3923	0.75	+0.4
3,962,893	-		GFF3923	0.76	-2.0
3,962,900	+		GFF3923	0.77	-1.7
3,962,908	-		GFF3923	0.78	-0.2
3,962,918	+		GFF3923	0.79	-0.0
3,962,937	+		GFF3923	0.81	+0.1
3,962,937	+		GFF3923	0.81	-0.3
3,962,937	+		GFF3923	0.81	-0.2
3,962,937	+		GFF3923	0.81	-0.7
3,962,945	-		GFF3923	0.81	-0.1
3,962,945	-		GFF3923	0.81	-0.6
3,962,945	-		GFF3923	0.81	-1.4
3,962,945	-		GFF3923	0.81	-0.2
3,962,945	-		GFF3923	0.81	-0.7
3,962,976	+		GFF3923	0.84	-1.7
3,962,979	-		GFF3923	0.85	-0.9
3,962,984	-		GFF3923	0.85	+0.6
3,962,984	-		GFF3923	0.85	+0.2
3,962,986	+		GFF3923	0.85	+0.7
3,962,986	+		GFF3923	0.85	+0.4
3,962,986	+		GFF3923	0.85	-2.3
3,962,986	+		GFF3923	0.85	-0.1
3,962,986	+		GFF3923	0.85	-2.5
3,962,986	+		GFF3923	0.85	-0.1
3,962,988	+		GFF3923	0.85	-2.3
3,962,994	-		GFF3923	0.86	+1.3
3,962,994	-		GFF3923	0.86	-1.5
3,962,994	-		GFF3923	0.86	-0.3
3,962,994	-		GFF3923	0.86	-2.1
3,962,994	-		GFF3923	0.86	-1.1
3,962,999	-		GFF3923	0.86	-1.1
3,963,003	+		GFF3923	0.87	+0.3
3,963,003	+		GFF3923	0.87	+0.6
3,963,003	+		GFF3923	0.87	-0.9
3,963,003	+		GFF3923	0.87	+0.8
3,963,003	+		GFF3923	0.87	+1.1
3,963,003	+		GFF3923	0.87	-0.4
3,963,006	-		GFF3923	0.87	-0.1
3,963,011	-		GFF3923	0.87	-0.9
3,963,013	+		GFF3923	0.88	+0.4
3,963,021	-		GFF3923	0.88	+0.3
3,963,021	-		GFF3923	0.88	-0.2
3,963,023	+		GFF3923	0.89	-3.3
3,963,023	+		GFF3923	0.89	+0.7
3,963,023	+		GFF3923	0.89	+0.0
3,963,023	+		GFF3923	0.89	+0.1
3,963,023	+		GFF3923	0.89	-0.7
3,963,023	+		GFF3923	0.89	-1.7
3,963,031	-		GFF3923	0.89	+0.8
3,963,062	+				+0.2
3,963,062	+				+0.6
3,963,072	+				-1.0
3,963,072	+				-0.7
3,963,073	+				-0.7
3,963,076	+				-0.2
3,963,084	+				+0.0
3,963,149	-				-0.1
3,963,155	-				-1.7
3,963,157	+				+0.9
3,963,167	+				+0.4
3,963,176	+				+0.9
3,963,196	-				+0.0
3,963,211	+				+1.1
3,963,217	+				+0.0
3,963,217	+				+0.4
3,963,217	+				+1.2
3,963,217	+				+0.5
3,963,217	+				-1.5
3,963,225	-				+0.9
3,963,225	-				+0.4
3,963,225	-				-0.8
3,963,225	-				+0.2
3,963,227	+				-0.6
3,963,249	-				-1.2
3,963,253	+				-2.0
3,963,261	-				-0.5
3,963,266	-				-0.4
3,963,266	-				-0.3
3,963,271	-				+0.1
3,963,271	-				-0.3
3,963,271	-				+1.5
3,963,271	-				-1.4
3,963,271	-				+0.3
3,963,284	+				-0.1
3,963,284	+				-0.7
3,963,284	+				-0.3
3,963,284	+				-1.1
3,963,289	+				+0.4
3,963,292	-				-2.7
3,963,309	-		GFF3924	0.11	+0.3
3,963,326	-		GFF3924	0.12	+0.3
3,963,381	-		GFF3924	0.16	+0.1
3,963,381	-		GFF3924	0.16	-0.2
3,963,461	+		GFF3924	0.21	-1.5
3,963,489	+		GFF3924	0.23	+1.4
3,963,495	+		GFF3924	0.24	-0.3
3,963,501	+		GFF3924	0.24	-0.7
3,963,503	-		GFF3924	0.24	-2.2
3,963,504	-		GFF3924	0.24	+0.3
3,963,543	+		GFF3924	0.27	-0.3
3,963,548	+		GFF3924	0.27	+0.9
3,963,548	+		GFF3924	0.27	-1.8
3,963,548	+		GFF3924	0.27	+0.6
3,963,548	+		GFF3924	0.27	+0.3
3,963,548	+		GFF3924	0.27	-0.8
3,963,548	+		GFF3924	0.27	-0.5
3,963,548	+		GFF3924	0.27	-0.1
3,963,548	+		GFF3924	0.27	+1.0
3,963,548	+		GFF3924	0.27	-1.5
3,963,550	-		GFF3924	0.28	+0.4
3,963,550	-		GFF3924	0.28	-2.8
3,963,551	-		GFF3924	0.28	-1.3
3,963,551	-		GFF3924	0.28	-0.3
3,963,556	-		GFF3924	0.28	-0.1
3,963,556	-		GFF3924	0.28	+0.7
3,963,556	-		GFF3924	0.28	+0.3
3,963,556	-		GFF3924	0.28	+0.5
3,963,556	-		GFF3924	0.28	-2.1
3,963,556	-		GFF3924	0.28	+0.8
3,963,556	-		GFF3924	0.28	-0.3
3,963,556	-		GFF3924	0.28	-0.4
3,963,556	-		GFF3924	0.28	-0.5
3,963,588	+		GFF3924	0.30	-0.3
3,963,588	+		GFF3924	0.30	+0.3
3,963,592	+		GFF3924	0.30	-1.2
3,963,592	+		GFF3924	0.30	-0.6
3,963,596	-		GFF3924	0.31	-1.3
3,963,662	-		GFF3924	0.35	-0.4
3,963,664	-		GFF3924	0.35	+0.1
3,963,697	+		GFF3924	0.38	+1.4
3,963,707	-		GFF3924	0.38	-0.5
3,963,736	-		GFF3924	0.40	+0.5
3,963,745	+		GFF3924	0.41	+0.9
3,963,752	+		GFF3924	0.41	+0.7
3,963,753	-		GFF3924	0.41	+0.6
3,963,753	-		GFF3924	0.41	+1.4
3,963,753	-		GFF3924	0.41	-1.3
3,963,753	-		GFF3924	0.41	+0.3
3,963,760	-		GFF3924	0.42	+0.6
3,963,778	-		GFF3924	0.43	+1.2
3,963,790	+		GFF3924	0.44	-0.3
3,963,816	+		GFF3924	0.46	-1.5
3,963,824	+		GFF3924	0.46	+0.5
3,963,824	-		GFF3924	0.46	-1.3
3,963,824	-		GFF3924	0.46	+0.3
3,963,869	+		GFF3924	0.49	+0.1
3,963,877	-		GFF3924	0.50	-1.3
3,963,900	+		GFF3924	0.51	+0.0
3,963,900	+		GFF3924	0.51	-0.5
3,963,916	-		GFF3924	0.53	+0.1
3,963,921	+		GFF3924	0.53	-0.7
3,963,921	+		GFF3924	0.53	-0.4
3,963,929	-		GFF3924	0.53	-0.7
3,963,938	+		GFF3924	0.54	-0.2
3,963,946	-		GFF3924	0.55	+0.1
3,964,013	-		GFF3924	0.59	+0.4
3,964,025	-		GFF3924	0.60	-0.5
3,964,025	-		GFF3924	0.60	+0.8
3,964,041	+		GFF3924	0.61	+0.6
3,964,042	-		GFF3924	0.61	+0.2
3,964,050	+		GFF3924	0.62	+0.5
3,964,058	-		GFF3924	0.62	-2.8
3,964,095	-		GFF3924	0.65	-1.1
3,964,099	+		GFF3924	0.65	+1.7
3,964,099	+		GFF3924	0.65	+1.0
3,964,107	-		GFF3924	0.66	+1.2
3,964,107	-		GFF3924	0.66	+0.3
3,964,109	+		GFF3924	0.66	+0.1
3,964,120	+		GFF3924	0.66	+1.0
3,964,160	+		GFF3924	0.69	+0.2
3,964,170	+		GFF3924	0.70	+0.6
3,964,175	+		GFF3924	0.70	-0.3
3,964,175	+		GFF3924	0.70	-1.2
3,964,176	+		GFF3924	0.70	-0.9
3,964,176	+		GFF3924	0.70	+0.3
3,964,176	+		GFF3924	0.70	+0.5
3,964,183	-		GFF3924	0.71	+1.0
3,964,183	-		GFF3924	0.71	-1.0
3,964,185	+		GFF3924	0.71	-0.3
3,964,186	+		GFF3924	0.71	-0.8
3,964,224	+		GFF3924	0.74	+1.3
3,964,224	+		GFF3924	0.74	-0.3
3,964,224	+		GFF3924	0.74	+1.0
3,964,225	+		GFF3924	0.74	-1.5
3,964,225	+		GFF3924	0.74	-2.4
3,964,226	-		GFF3924	0.74	+0.6
3,964,234	-		GFF3924	0.74	-2.1
3,964,239	+		GFF3924	0.75	-0.3
3,964,247	-		GFF3924	0.75	-0.1
3,964,254	+		GFF3924	0.76	-0.5
3,964,254	-		GFF3924	0.76	+1.0
3,964,277	-		GFF3924	0.77	-2.1
3,964,318	-		GFF3924	0.80	-0.2
3,964,318	-		GFF3924	0.80	+0.4
3,964,333	+		GFF3924	0.81	-0.9
3,964,361	+		GFF3924	0.83	-1.9
3,964,361	+		GFF3924	0.83	+0.7
3,964,361	+		GFF3924	0.83	+0.8
3,964,390	-		GFF3924	0.85	-0.9
3,964,390	-		GFF3924	0.85	-1.3
3,964,390	-		GFF3924	0.85	+0.6
3,964,390	-		GFF3924	0.85	-0.3
3,964,390	-		GFF3924	0.85	+0.4
3,964,412	+		GFF3924	0.86	-0.3
3,964,424	+		GFF3924	0.87	+1.4
3,964,424	+		GFF3924	0.87	-0.9
3,964,424	+		GFF3924	0.87	-0.1
3,964,424	+		GFF3924	0.87	-1.3
3,964,424	+		GFF3924	0.87	-0.8
3,964,424	+		GFF3924	0.87	-0.5
3,964,424	+		GFF3924	0.87	-0.9
3,964,427	-		GFF3924	0.87	-1.3
3,964,427	-		GFF3924	0.87	-0.4
3,964,432	-		GFF3924	0.88	-1.2
3,964,432	-		GFF3924	0.88	-0.8
3,964,432	-		GFF3924	0.88	-1.9
3,964,442	-		GFF3924	0.88	-0.9
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