Strain Fitness in Sphingobium sp. HT1-2 around GFF3845

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,882,704	-		GFF3843	0.56	-0.7
3,882,775	-		GFF3843	0.62	+0.8
3,882,780	-		GFF3843	0.62	-0.3
3,882,788	-		GFF3843	0.63	+0.6
3,882,795	+		GFF3843	0.63	+1.1
3,882,809	-		GFF3843	0.64	-1.0
3,882,827	+		GFF3843	0.66	-2.0
3,882,827	+		GFF3843	0.66	-0.7
3,882,827	+		GFF3843	0.66	-0.3
3,882,827	+		GFF3843	0.66	-0.7
3,882,827	+		GFF3843	0.66	+0.4
3,882,865	-		GFF3843	0.68	-0.2
3,882,884	-		GFF3843	0.70	-0.9
3,882,889	-		GFF3843	0.70	-0.4
3,882,901	+		GFF3843	0.71	-0.3
3,882,901	+		GFF3843	0.71	+0.4
3,882,901	+		GFF3843	0.71	-0.8
3,882,901	+		GFF3843	0.71	+0.4
3,882,901	+		GFF3843	0.71	+0.9
3,882,901	+		GFF3843	0.71	+0.8
3,882,901	+		GFF3843	0.71	+0.2
3,882,906	+		GFF3843	0.72	+0.2
3,882,909	-		GFF3843	0.72	-1.6
3,882,909	-		GFF3843	0.72	+0.6
3,882,909	-		GFF3843	0.72	-0.2
3,882,909	-		GFF3843	0.72	+1.1
3,882,909	-		GFF3843	0.72	+0.5
3,882,909	-		GFF3843	0.72	-1.0
3,882,909	-		GFF3843	0.72	-0.4
3,882,909	-		GFF3843	0.72	-0.3
3,882,909	-		GFF3843	0.72	-1.5
3,882,909	-		GFF3843	0.72	-0.4
3,882,909	-		GFF3843	0.72	-0.7
3,882,909	-		GFF3843	0.72	+0.7
3,882,909	-		GFF3843	0.72	-1.5
3,882,914	-		GFF3843	0.72	-1.3
3,882,929	-		GFF3843	0.73	+0.5
3,882,929	-		GFF3843	0.73	-0.1
3,882,930	+		GFF3843	0.73	-1.1
3,882,930	+		GFF3843	0.73	+0.7
3,882,938	-		GFF3843	0.74	-0.5
3,882,938	-		GFF3843	0.74	+0.2
3,882,938	-		GFF3843	0.74	-1.0
3,882,938	-		GFF3843	0.74	+0.2
3,882,957	-		GFF3843	0.75	+0.3
3,882,964	+		GFF3843	0.76	+1.5
3,882,979	+		GFF3843	0.77	-2.5
3,882,979	+		GFF3843	0.77	-1.2
3,882,987	-		GFF3843	0.78	-0.1
3,882,987	-		GFF3843	0.78	+0.2
3,882,989	+		GFF3843	0.78	-0.1
3,882,997	-		GFF3843	0.78	-1.7
3,882,997	-		GFF3843	0.78	+0.2
3,883,003	+		GFF3843	0.79	-0.6
3,883,003	+		GFF3843	0.79	-0.2
3,883,003	+		GFF3843	0.79	-0.5
3,883,042	-		GFF3843	0.82	+0.7
3,883,053	+		GFF3843	0.83	+0.7
3,883,056	-		GFF3843	0.83	-1.6
3,883,094	+		GFF3843	0.86	+0.5
3,883,103	-		GFF3843	0.86	-0.8
3,883,117	+		GFF3843	0.88	-0.2
3,883,121	-		GFF3843	0.88	+0.5
3,883,126	-		GFF3843	0.88	-0.4
3,883,132	+		GFF3843	0.89	-1.3
3,883,132	+		GFF3843	0.89	-1.3
3,883,132	+		GFF3843	0.89	-0.2
3,883,132	+		GFF3843	0.89	-0.4
3,883,140	-		GFF3843	0.89	+1.0
3,883,140	-		GFF3843	0.89	+0.1
3,883,140	-		GFF3843	0.89	-0.9
3,883,140	-		GFF3843	0.89	-0.2
3,883,145	-		GFF3843	0.90	-0.5
3,883,159	-				-0.4
3,883,161	+				-0.3
3,883,165	+				-1.4
3,883,171	+				-1.6
3,883,172	-				-0.0
3,883,173	-				-0.4
3,883,174	-				-1.8
3,883,192	+				-0.9
3,883,200	-				+0.6
3,883,200	-				-1.0
3,883,202	+				-0.3
3,883,207	+				-0.4
3,883,207	+				+0.4
3,883,213	-				-1.5
3,883,225	+				-0.1
3,883,238	-				+0.6
3,883,238	-				-0.8
3,883,269	+				-2.3
3,883,274	-				+0.3
3,883,286	+				-0.1
3,883,286	+				-1.3
3,883,347	+				+0.1
3,883,354	-		GFF3844	0.10	-0.7
3,883,354	-		GFF3844	0.10	-0.3
3,883,358	+		GFF3844	0.12	-0.1
3,883,366	-		GFF3844	0.16	+0.5
3,883,373	+		GFF3844	0.20	-1.7
3,883,373	+		GFF3844	0.20	+0.9
3,883,376	-		GFF3844	0.21	-0.1
3,883,381	-		GFF3844	0.24	+1.0
3,883,393	-		GFF3844	0.30	+0.5
3,883,399	-		GFF3844	0.33	+0.1
3,883,431	+		GFF3844	0.49	-0.4
3,883,454	+		GFF3844	0.60	-1.4
3,883,454	+		GFF3844	0.60	-1.3
3,883,454	+		GFF3844	0.60	-0.1
3,883,462	-		GFF3844	0.64	-0.2
3,883,462	-		GFF3844	0.64	-1.9
3,883,467	+		GFF3844	0.67	-0.6
3,883,467	+		GFF3844	0.67	-0.4
3,883,467	-		GFF3844	0.67	-0.4
3,883,475	-		GFF3844	0.71	+0.6
3,883,478	+		GFF3844	0.72	-1.1
3,883,478	+		GFF3844	0.72	-2.1
3,883,483	-		GFF3844	0.75	-2.1
3,883,559	+				+0.7
3,883,559	+				-0.1
3,883,567	-				+0.1
3,883,567	-				-0.9
3,883,567	-				-1.8
3,883,573	-				+0.5
3,883,645	+				-1.2
3,883,655	+				+2.3
3,883,670	+				-0.0
3,883,670	+				+0.1
3,883,670	+				-0.2
3,883,670	+				+0.4
3,883,670	+				-0.2
3,883,670	+				-1.8
3,883,670	+				-0.4
3,883,670	+				-0.5
3,883,670	+				+0.3
3,883,670	+				+1.1
3,883,670	+				-1.7
3,883,670	+				-1.9
3,883,670	+				+1.1
3,883,670	+				-2.3
3,883,670	+				+0.4
3,883,670	+				-0.6
3,883,670	+				+1.1
3,883,670	+				-0.5
3,883,670	+				-1.4
3,883,676	+				-0.2
3,883,678	-				-0.8
3,883,678	-				+0.4
3,883,678	-				-0.3
3,883,678	-				-0.7
3,883,678	-				-1.3
3,883,678	-				+0.3
3,883,678	-				-1.0
3,883,678	-				-1.0
3,883,678	-				-0.9
3,883,678	-				+0.5
3,883,678	-				-1.2
3,883,678	-				-0.7
3,883,678	-				-0.5
3,883,678	-				-0.6
3,883,678	-				+1.2
3,883,684	+				-1.8
3,883,684	+				+0.7
3,883,686	+				-1.7
3,883,686	+				-0.5
3,883,694	-				-1.0
3,883,694	-				-0.2
3,883,694	-				-1.4
3,883,694	-				+0.9
3,883,694	-				-0.2
3,883,701	+				-0.4
3,883,705	+				-0.2
3,883,720	+				+0.5
3,883,720	+				-0.5
3,883,723	+				-0.9
3,883,725	+				+0.0
3,883,725	+				+1.0
3,883,731	-				+0.4
3,883,733	-				-0.8
3,883,777	-				+0.0
3,883,777	-				+0.4
3,883,777	-				+0.6
3,883,816	+				-0.1
3,883,816	+				+1.0
3,883,816	+				+0.8
3,883,816	+				+0.4
3,883,816	+				-0.2
3,883,816	+				-0.7
3,883,823	+				-1.3
3,883,824	-				-0.1
3,883,824	-				-1.4
3,883,824	-				-0.6
3,883,831	-				+0.4
3,883,868	+		GFF3845	0.12	-0.2
3,883,868	+		GFF3845	0.12	+0.1
3,883,874	+		GFF3845	0.12	+0.1
3,883,876	-		GFF3845	0.12	+0.1
3,883,876	-		GFF3845	0.12	+0.5
3,883,919	-		GFF3845	0.15	-0.2
3,883,927	+		GFF3845	0.16	-1.5
3,883,929	-		GFF3845	0.16	+0.8
3,883,974	+		GFF3845	0.19	-1.2
3,883,978	-		GFF3845	0.19	+0.4
3,883,991	-		GFF3845	0.20	-1.3
3,883,999	+		GFF3845	0.21	+1.6
3,884,007	+		GFF3845	0.21	+0.3
3,884,007	+		GFF3845	0.21	+0.3
3,884,050	+		GFF3845	0.24	+1.1
3,884,058	-		GFF3845	0.25	-0.6
3,884,060	+		GFF3845	0.25	+0.1
3,884,068	-		GFF3845	0.26	-0.4
3,884,068	-		GFF3845	0.26	-1.0
3,884,068	-		GFF3845	0.26	+1.0
3,884,084	-		GFF3845	0.27	-2.6
3,884,084	-		GFF3845	0.27	-0.6
3,884,084	-		GFF3845	0.27	-0.3
3,884,096	+		GFF3845	0.28	-2.4
3,884,109	-		GFF3845	0.29	-0.4
3,884,115	+		GFF3845	0.29	+0.3
3,884,115	+		GFF3845	0.29	+1.3
3,884,123	-		GFF3845	0.30	-0.5
3,884,123	-		GFF3845	0.30	-0.5
3,884,123	-		GFF3845	0.30	+0.4
3,884,143	-		GFF3845	0.31	-0.4
3,884,149	-		GFF3845	0.31	-1.0
3,884,161	+		GFF3845	0.32	-0.3
3,884,184	+		GFF3845	0.34	-0.6
3,884,189	+		GFF3845	0.34	-0.2
3,884,189	+		GFF3845	0.34	-0.4
3,884,192	-		GFF3845	0.34	+0.1
3,884,200	-		GFF3845	0.35	-1.2
3,884,246	+		GFF3845	0.38	-1.4
3,884,254	-		GFF3845	0.39	-0.3
3,884,261	+		GFF3845	0.39	+0.5
3,884,261	+		GFF3845	0.39	+0.1
3,884,262	-		GFF3845	0.39	+1.0
3,884,262	-		GFF3845	0.39	+0.2
3,884,267	-		GFF3845	0.40	+0.5
3,884,271	+		GFF3845	0.40	-2.3
3,884,281	+		GFF3845	0.41	+1.2
3,884,297	+		GFF3845	0.42	-2.2
3,884,305	+		GFF3845	0.42	-0.5
3,884,305	+		GFF3845	0.42	-1.5
3,884,313	-		GFF3845	0.43	+0.1
3,884,313	-		GFF3845	0.43	-1.1
3,884,313	-		GFF3845	0.43	-0.2
3,884,337	-		GFF3845	0.45	+0.3
3,884,362	+		GFF3845	0.46	+1.3
3,884,362	+		GFF3845	0.46	+1.5
3,884,364	+		GFF3845	0.46	-0.6
3,884,364	+		GFF3845	0.46	+0.1
3,884,370	-		GFF3845	0.47	+0.6
3,884,372	-		GFF3845	0.47	+0.3
3,884,372	-		GFF3845	0.47	+0.1
3,884,396	+		GFF3845	0.49	+0.3
3,884,404	-		GFF3845	0.49	-0.5
3,884,444	-		GFF3845	0.52	-0.4
3,884,445	+		GFF3845	0.52	-0.2
3,884,453	-		GFF3845	0.53	+0.7
3,884,453	-		GFF3845	0.53	-0.6
3,884,463	-		GFF3845	0.53	-0.2
3,884,475	-		GFF3845	0.54	-0.2
3,884,511	+		GFF3845	0.57	-0.6
3,884,519	-		GFF3845	0.57	+0.4
3,884,528	+		GFF3845	0.58	-0.3
3,884,528	+		GFF3845	0.58	+0.7
3,884,528	+		GFF3845	0.58	+0.3
3,884,528	+		GFF3845	0.58	-0.5
3,884,528	+		GFF3845	0.58	-0.8
3,884,528	+		GFF3845	0.58	+0.3
3,884,528	+		GFF3845	0.58	+0.0
3,884,536	-		GFF3845	0.59	-1.2
3,884,536	-		GFF3845	0.59	-0.7
3,884,536	-		GFF3845	0.59	-0.1
3,884,538	+		GFF3845	0.59	-0.9
3,884,538	+		GFF3845	0.59	-2.6
3,884,538	+		GFF3845	0.59	-0.2
3,884,538	+		GFF3845	0.59	-3.0
3,884,538	+		GFF3845	0.59	-0.2
3,884,538	+		GFF3845	0.59	-0.6
3,884,538	+		GFF3845	0.59	+0.8
3,884,546	-		GFF3845	0.59	-0.5
3,884,546	-		GFF3845	0.59	-0.1
3,884,546	-		GFF3845	0.59	-1.3
3,884,546	-		GFF3845	0.59	-1.0
3,884,546	-		GFF3845	0.59	-0.1
3,884,546	-		GFF3845	0.59	-2.7
3,884,546	-		GFF3845	0.59	-0.0
3,884,546	-		GFF3845	0.59	+0.8
3,884,578	+		GFF3845	0.61	-0.3
3,884,582	+		GFF3845	0.62	-0.3
3,884,583	+		GFF3845	0.62	+0.5
3,884,583	+		GFF3845	0.62	+0.0
3,884,586	-		GFF3845	0.62	-0.2
3,884,591	-		GFF3845	0.62	-0.6
3,884,591	-		GFF3845	0.62	-0.0
3,884,607	+		GFF3845	0.64	-0.9
3,884,607	+		GFF3845	0.64	+0.7
3,884,607	+		GFF3845	0.64	+0.5
3,884,615	-		GFF3845	0.64	-1.5
3,884,615	-		GFF3845	0.64	-1.9
3,884,620	-		GFF3845	0.64	-1.8
3,884,622	+		GFF3845	0.65	-0.0
3,884,630	-		GFF3845	0.65	+1.3
3,884,637	-		GFF3845	0.66	-0.3
3,884,650	+		GFF3845	0.67	-0.3
3,884,650	+		GFF3845	0.67	+0.1
3,884,650	+		GFF3845	0.67	-0.0
3,884,653	-		GFF3845	0.67	+0.5
3,884,658	-		GFF3845	0.67	+0.7
3,884,658	-		GFF3845	0.67	-0.3
3,884,661	-		GFF3845	0.67	-0.5
3,884,664	+		GFF3845	0.68	-0.3
3,884,664	+		GFF3845	0.68	+0.4
3,884,664	+		GFF3845	0.68	+0.3
3,884,664	+		GFF3845	0.68	+0.8
3,884,666	-		GFF3845	0.68	+1.0
3,884,673	+		GFF3845	0.68	-2.6
3,884,673	+		GFF3845	0.68	-0.6
3,884,681	-		GFF3845	0.69	-1.6
3,884,682	-		GFF3845	0.69	-0.7
3,884,686	-		GFF3845	0.69	+0.2
3,884,786	+		GFF3845	0.76	+0.4
3,884,804	-		GFF3845	0.77	-0.6
3,884,812	+		GFF3845	0.78	+0.1
3,884,812	+		GFF3845	0.78	+0.7
3,884,812	+		GFF3845	0.78	-1.5
3,884,820	-		GFF3845	0.78	+0.2
3,884,831	-		GFF3845	0.79	+0.6
3,884,847	-		GFF3845	0.80	+0.3
3,884,864	+		GFF3845	0.82	+0.0
3,884,868	+		GFF3845	0.82	+1.0
3,884,874	+		GFF3845	0.82	-2.7
3,884,874	+		GFF3845	0.82	+0.1
3,884,876	-		GFF3845	0.82	+0.3
3,884,887	+		GFF3845	0.83	-2.0
3,884,887	+		GFF3845	0.83	+0.3
3,884,887	+		GFF3845	0.83	-0.2
3,884,887	+		GFF3845	0.83	-0.7
3,884,887	-		GFF3845	0.83	-0.5
3,884,887	-		GFF3845	0.83	-0.4
3,884,895	-		GFF3845	0.84	+1.3
3,884,913	+		GFF3845	0.85	-1.8
3,884,917	+		GFF3845	0.85	-0.3
3,884,927	+		GFF3845	0.86	-0.5
3,884,927	+		GFF3845	0.86	-0.2
3,884,927	+		GFF3845	0.86	+1.0
3,884,927	+		GFF3845	0.86	-2.1
3,884,927	+		GFF3845	0.86	-0.2
3,884,930	-		GFF3845	0.86	-0.1
3,884,935	-		GFF3845	0.87	-0.7
3,884,935	-		GFF3845	0.87	-1.2
3,884,935	-		GFF3845	0.87	+0.8
3,884,935	-		GFF3845	0.87	-0.3
3,884,935	-		GFF3845	0.87	-0.6
3,884,935	-		GFF3845	0.87	-0.3
3,884,935	-		GFF3845	0.87	+1.3
3,884,945	-		GFF3845	0.87	-0.1
3,884,961	+		GFF3845	0.88	+0.8
3,884,961	+		GFF3845	0.88	-0.0
3,884,969	-		GFF3845	0.89	-0.9
3,884,986	-				-2.5
3,885,001	-				-0.1
3,885,012	-				+0.2
3,885,018	+				+0.4
3,885,018	+				-0.6
3,885,018	+				+0.6
3,885,026	-				-0.3
3,885,026	-				-0.7
3,885,026	-				-0.3
3,885,026	-				-1.7
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