Strain Fitness in Sphingobium sp. HT1-2 around GFF3816

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,857,098	+		GFF3815	0.37	-2.3
3,857,098	+		GFF3815	0.37	-0.7
3,857,098	+		GFF3815	0.37	+0.2
3,857,098	+		GFF3815	0.37	+1.4
3,857,098	+		GFF3815	0.37	+0.3
3,857,098	+		GFF3815	0.37	-1.2
3,857,098	+		GFF3815	0.37	-1.0
3,857,098	+		GFF3815	0.37	-1.2
3,857,103	-		GFF3815	0.37	+0.2
3,857,105	-		GFF3815	0.37	-2.1
3,857,106	-		GFF3815	0.38	+0.2
3,857,106	-		GFF3815	0.38	-1.2
3,857,106	-		GFF3815	0.38	-0.1
3,857,106	-		GFF3815	0.38	-1.8
3,857,106	-		GFF3815	0.38	-0.1
3,857,106	-		GFF3815	0.38	+2.0
3,857,106	-		GFF3815	0.38	+0.5
3,857,108	+		GFF3815	0.38	-2.7
3,857,108	+		GFF3815	0.38	-0.8
3,857,108	+		GFF3815	0.38	-1.8
3,857,111	-		GFF3815	0.38	-1.1
3,857,116	-		GFF3815	0.38	-0.4
3,857,116	-		GFF3815	0.38	+0.1
3,857,116	-		GFF3815	0.38	-2.0
3,857,149	+		GFF3815	0.41	-2.0
3,857,154	+		GFF3815	0.41	-2.0
3,857,154	+		GFF3815	0.41	+0.6
3,857,162	-		GFF3815	0.42	-1.6
3,857,181	+		GFF3815	0.43	+0.2
3,857,183	+		GFF3815	0.44	-1.6
3,857,188	+		GFF3815	0.44	-2.5
3,857,188	+		GFF3815	0.44	-0.3
3,857,188	+		GFF3815	0.44	-0.8
3,857,188	+		GFF3815	0.44	-0.4
3,857,188	+		GFF3815	0.44	-0.8
3,857,188	+		GFF3815	0.44	-0.1
3,857,191	-		GFF3815	0.44	-2.0
3,857,196	-		GFF3815	0.45	-1.4
3,857,196	-		GFF3815	0.45	-2.3
3,857,196	-		GFF3815	0.45	+0.8
3,857,211	-		GFF3815	0.46	-0.3
3,857,222	+		GFF3815	0.47	+0.1
3,857,240	-		GFF3815	0.48	-1.0
3,857,265	-		GFF3815	0.50	-0.1
3,857,267	+		GFF3815	0.50	-0.8
3,857,268	-		GFF3815	0.50	+1.7
3,857,279	+		GFF3815	0.51	-1.3
3,857,279	+		GFF3815	0.51	+0.2
3,857,291	+		GFF3815	0.52	+0.4
3,857,300	+		GFF3815	0.53	-0.2
3,857,300	+		GFF3815	0.53	+0.0
3,857,300	+		GFF3815	0.53	-0.4
3,857,300	-		GFF3815	0.53	-1.4
3,857,305	+		GFF3815	0.53	-0.1
3,857,305	+		GFF3815	0.53	-1.5
3,857,308	-		GFF3815	0.53	-1.7
3,857,326	+		GFF3815	0.55	-0.7
3,857,326	+		GFF3815	0.55	+0.8
3,857,355	+		GFF3815	0.57	-0.4
3,857,368	-		GFF3815	0.58	+0.4
3,857,373	-		GFF3815	0.58	+1.1
3,857,379	+		GFF3815	0.59	-1.5
3,857,379	+		GFF3815	0.59	-0.8
3,857,428	-		GFF3815	0.63	-2.3
3,857,430	-		GFF3815	0.63	-0.4
3,857,497	+		GFF3815	0.68	+0.3
3,857,502	+		GFF3815	0.69	-0.1
3,857,507	+		GFF3815	0.69	-1.4
3,857,507	+		GFF3815	0.69	+1.0
3,857,507	+		GFF3815	0.69	+0.1
3,857,507	+		GFF3815	0.69	+0.7
3,857,507	+		GFF3815	0.69	+0.5
3,857,507	+		GFF3815	0.69	-1.5
3,857,507	+		GFF3815	0.69	+0.7
3,857,507	+		GFF3815	0.69	+0.4
3,857,507	+		GFF3815	0.69	-0.3
3,857,507	+		GFF3815	0.69	+0.2
3,857,507	+		GFF3815	0.69	+0.4
3,857,507	+		GFF3815	0.69	-0.2
3,857,507	+		GFF3815	0.69	-0.3
3,857,507	+		GFF3815	0.69	-1.2
3,857,507	+		GFF3815	0.69	+1.1
3,857,507	+		GFF3815	0.69	+0.6
3,857,507	+		GFF3815	0.69	-2.7
3,857,507	+		GFF3815	0.69	-0.3
3,857,507	+		GFF3815	0.69	-0.8
3,857,509	+		GFF3815	0.69	-0.1
3,857,514	+		GFF3815	0.70	-1.3
3,857,515	-		GFF3815	0.70	-1.1
3,857,515	-		GFF3815	0.70	+0.8
3,857,515	-		GFF3815	0.70	-0.2
3,857,515	-		GFF3815	0.70	-1.3
3,857,515	-		GFF3815	0.70	-0.4
3,857,515	-		GFF3815	0.70	-2.5
3,857,515	-		GFF3815	0.70	-1.3
3,857,515	-		GFF3815	0.70	-0.3
3,857,515	-		GFF3815	0.70	+1.0
3,857,515	-		GFF3815	0.70	-2.1
3,857,515	-		GFF3815	0.70	-0.3
3,857,515	-		GFF3815	0.70	-1.2
3,857,519	+		GFF3815	0.70	+0.4
3,857,536	+		GFF3815	0.71	+1.0
3,857,574	+		GFF3815	0.74	-0.1
3,857,579	+		GFF3815	0.75	-1.3
3,857,594	+		GFF3815	0.76	+0.4
3,857,599	+		GFF3815	0.76	+0.1
3,857,607	-		GFF3815	0.77	+0.3
3,857,701	-		GFF3815	0.84	+1.0
3,857,708	+		GFF3815	0.85	-0.4
3,857,718	+		GFF3815	0.86	-0.7
3,857,728	+		GFF3815	0.86	+0.6
3,857,728	+		GFF3815	0.86	+1.2
3,857,728	+		GFF3815	0.86	-1.3
3,857,733	+		GFF3815	0.87	-2.3
3,857,736	-		GFF3815	0.87	-0.5
3,857,778	+				-0.6
3,857,796	+				+0.3
3,857,803	+				+0.2
3,857,830	+				+0.2
3,857,857	+				-0.3
3,857,865	-				+0.9
3,857,879	-				-0.2
3,857,879	-				+0.2
3,857,882	+				-0.5
3,857,903	+				-0.5
3,857,903	+				+0.0
3,857,903	+				-1.4
3,857,903	+				+0.5
3,857,911	-				-0.4
3,857,911	-				-0.5
3,857,911	-				+1.3
3,857,911	-				+1.5
3,857,921	-				-0.2
3,857,929	+				-0.5
3,857,934	+				-1.2
3,857,934	+				-0.8
3,857,939	+				-0.2
3,857,942	+				+0.2
3,857,942	-				-0.4
3,857,977	+				+0.4
3,857,977	+				+0.6
3,857,985	+				+0.2
3,857,985	-				+0.4
3,857,993	+				+0.4
3,857,993	-				-2.1
3,857,993	-				-1.2
3,858,004	+				-0.3
3,858,008	+				+1.6
3,858,017	+				-1.5
3,858,017	+				-0.2
3,858,022	+				+0.4
3,858,031	-				+0.2
3,858,044	+				-1.9
3,858,071	-				+0.4
3,858,092	-				-0.5
3,858,106	+				-1.7
3,858,107	+				-0.2
3,858,107	-				+0.0
3,858,114	-				-0.5
3,858,139	-				+0.0
3,858,146	+				-1.6
3,858,146	+				-0.1
3,858,146	+				+1.5
3,858,154	-		GFF3816	0.10	+0.2
3,858,164	-		GFF3816	0.11	-1.5
3,858,196	+		GFF3816	0.15	-2.1
3,858,205	-		GFF3816	0.17	-0.4
3,858,208	+		GFF3816	0.17	+0.1
3,858,216	-		GFF3816	0.18	-2.8
3,858,251	-		GFF3816	0.22	-1.4
3,858,253	+		GFF3816	0.23	-2.4
3,858,258	+		GFF3816	0.23	-1.4
3,858,261	-		GFF3816	0.24	-0.7
3,858,279	+		GFF3816	0.26	+1.1
3,858,290	+		GFF3816	0.27	-0.5
3,858,298	-		GFF3816	0.28	-2.2
3,858,298	-		GFF3816	0.28	-2.9
3,858,298	-		GFF3816	0.28	+0.4
3,858,298	-		GFF3816	0.28	-0.2
3,858,298	-		GFF3816	0.28	-1.3
3,858,309	+		GFF3816	0.30	+0.9
3,858,312	-		GFF3816	0.30	-2.0
3,858,317	-		GFF3816	0.31	-2.2
3,858,317	-		GFF3816	0.31	+0.0
3,858,323	-		GFF3816	0.31	-1.8
3,858,325	+		GFF3816	0.32	-0.0
3,858,333	-		GFF3816	0.33	-1.2
3,858,354	-		GFF3816	0.35	-1.0
3,858,363	+		GFF3816	0.36	-0.1
3,858,364	+		GFF3816	0.36	-2.1
3,858,432	+		GFF3816	0.45	+1.9
3,858,449	-		GFF3816	0.47	-0.8
3,858,466	+		GFF3816	0.49	+0.6
3,858,471	+		GFF3816	0.50	-0.4
3,858,476	+		GFF3816	0.51	-1.0
3,858,493	+		GFF3816	0.53	-1.6
3,858,520	+		GFF3816	0.56	-0.5
3,858,520	+		GFF3816	0.56	-0.6
3,858,520	+		GFF3816	0.56	-0.9
3,858,550	-		GFF3816	0.60	-0.8
3,858,554	+		GFF3816	0.60	+0.5
3,858,555	+		GFF3816	0.60	-1.1
3,858,592	+		GFF3816	0.65	-0.7
3,858,593	+		GFF3816	0.65	-1.5
3,858,600	-		GFF3816	0.66	-1.6
3,858,601	-		GFF3816	0.66	-0.5
3,858,601	-		GFF3816	0.66	-0.2
3,858,601	-		GFF3816	0.66	-0.6
3,858,621	+		GFF3816	0.69	-0.4
3,858,681	-		GFF3816	0.76	-0.2
3,858,686	-		GFF3816	0.77	-2.1
3,858,696	+		GFF3816	0.78	-1.2
3,858,732	+		GFF3816	0.83	+0.1
3,858,756	+		GFF3816	0.86	-0.4
3,858,765	+		GFF3816	0.87	-0.5
3,858,768	-		GFF3816	0.87	-0.9
3,858,768	-		GFF3816	0.87	-0.6
3,858,781	-		GFF3816	0.89	-1.3
3,858,786	-		GFF3816	0.89	-0.3
3,858,792	-				-2.1
3,858,792	-				+0.3
3,858,792	-				-0.7
3,858,824	-				-2.4
3,858,827	+				-0.6
3,858,827	+				-0.6
3,858,827	+				-2.1
3,858,835	-				-1.7
3,858,835	-				-0.9
3,858,879	-				+0.6
3,858,879	-				-2.5
3,858,883	+				-1.3
3,858,885	+				-3.2
3,858,891	-				-0.5
3,858,892	+				+0.8
3,858,893	-				-1.2
3,858,910	-				-0.6
3,858,910	-				+0.1
3,858,938	-				-0.4
3,858,943	+				-0.5
3,858,951	-				-1.6
3,858,960	+				-1.6
3,858,960	+				-2.1
3,858,992	+				+0.1
3,859,049	+				+1.2
3,859,075	-		GFF3817	0.12	-0.5
3,859,077	+		GFF3817	0.12	-0.4
3,859,077	+		GFF3817	0.12	+0.2
3,859,077	+		GFF3817	0.12	+0.0
3,859,077	+		GFF3817	0.12	+0.3
3,859,077	+		GFF3817	0.12	-0.5
3,859,085	-		GFF3817	0.13	-2.1
3,859,085	-		GFF3817	0.13	+0.6
3,859,085	-		GFF3817	0.13	+0.2
3,859,087	+		GFF3817	0.13	-1.9
3,859,189	-		GFF3817	0.23	-0.5
3,859,189	-		GFF3817	0.23	-2.5
3,859,194	-		GFF3817	0.24	+0.2
3,859,214	+		GFF3817	0.26	+0.0
3,859,217	+		GFF3817	0.26	-0.8
3,859,220	-		GFF3817	0.26	+0.5
3,859,222	+		GFF3817	0.26	-0.3
3,859,228	-		GFF3817	0.27	-0.1
3,859,275	-		GFF3817	0.32	+0.4
3,859,292	+		GFF3817	0.33	-0.1
3,859,292	+		GFF3817	0.33	-0.2
3,859,300	-		GFF3817	0.34	+0.0
3,859,300	-		GFF3817	0.34	-1.9
3,859,319	-		GFF3817	0.36	-2.9
3,859,325	-		GFF3817	0.37	-3.1
3,859,334	-		GFF3817	0.38	+0.9
3,859,358	-		GFF3817	0.40	-0.8
3,859,366	-		GFF3817	0.41	-0.6
3,859,368	-		GFF3817	0.41	-1.1
3,859,378	+		GFF3817	0.42	-0.4
3,859,443	-		GFF3817	0.49	+2.0
3,859,443	-		GFF3817	0.49	+0.5
3,859,448	+		GFF3817	0.49	-1.3
3,859,456	-		GFF3817	0.50	-0.4
3,859,456	-		GFF3817	0.50	-0.7
3,859,456	-		GFF3817	0.50	-0.2
3,859,456	-		GFF3817	0.50	+1.1
3,859,483	-		GFF3817	0.53	-0.4
3,859,520	-		GFF3817	0.56	-0.7
3,859,552	+		GFF3817	0.60	-1.4
3,859,552	+		GFF3817	0.60	+0.7
3,859,552	+		GFF3817	0.60	-1.0
3,859,566	+		GFF3817	0.61	+0.7
3,859,567	+		GFF3817	0.61	-2.8
3,859,575	+		GFF3817	0.62	+0.5
3,859,575	+		GFF3817	0.62	+0.5
3,859,584	+		GFF3817	0.63	-0.8
3,859,590	-		GFF3817	0.63	+0.5
3,859,646	+		GFF3817	0.69	-0.1
3,859,646	+		GFF3817	0.69	-0.1
3,859,656	-		GFF3817	0.70	+1.0
3,859,672	+		GFF3817	0.72	-1.3
3,859,680	-		GFF3817	0.72	-2.3
3,859,680	-		GFF3817	0.72	-0.2
3,859,680	-		GFF3817	0.72	+0.0
3,859,682	+		GFF3817	0.73	-0.7
3,859,709	+		GFF3817	0.75	+0.3
3,859,709	+		GFF3817	0.75	-0.2
3,859,709	+		GFF3817	0.75	-1.6
3,859,713	+		GFF3817	0.76	+0.3
3,859,717	-		GFF3817	0.76	+0.2
3,859,755	-		GFF3817	0.80	+0.7
3,859,777	+		GFF3817	0.82	+0.0
3,859,784	+		GFF3817	0.83	+1.2
3,859,785	-		GFF3817	0.83	+0.1
3,859,786	-		GFF3817	0.83	-3.0
3,859,792	-		GFF3817	0.84	+0.7
3,859,797	+		GFF3817	0.84	+1.3
3,859,805	-		GFF3817	0.85	-0.4
3,859,829	+		GFF3817	0.87	-1.3
3,859,829	+		GFF3817	0.87	+0.5
3,859,829	+		GFF3817	0.87	-0.6
3,859,829	+		GFF3817	0.87	-0.2
3,859,837	-		GFF3817	0.88	-0.3
3,859,861	+				+1.0
3,859,861	+				-1.2
3,859,864	-				-0.6
3,859,869	-				+1.0
3,859,869	-				-1.2