Strain Fitness in Sphingobium sp. HT1-2 around GFF3783

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,824,049	-				+1.2
3,824,054	-				-1.8
3,824,056	-				-1.0
3,824,059	+				+0.6
3,824,059	-				+0.5
3,824,067	-				-0.2
3,824,075	+				-0.8
3,824,083	-				-2.1
3,824,101	-				-1.3
3,824,101	-				-1.5
3,824,121	+				+0.3
3,824,121	+				-1.4
3,824,121	+				+1.3
3,824,121	+				+0.8
3,824,124	-				-0.1
3,824,129	-				-0.4
3,824,153	+				-0.2
3,824,192	+		GFF3782	0.12	+0.4
3,824,192	+		GFF3782	0.12	+2.2
3,824,198	+		GFF3782	0.13	+0.5
3,824,206	+		GFF3782	0.14	-0.5
3,824,206	-		GFF3782	0.14	-0.0
3,824,206	-		GFF3782	0.14	-0.4
3,824,206	-		GFF3782	0.14	-3.0
3,824,219	+		GFF3782	0.15	-0.5
3,824,219	+		GFF3782	0.15	+0.2
3,824,238	-		GFF3782	0.18	+0.0
3,824,255	+		GFF3782	0.20	-0.8
3,824,286	+		GFF3782	0.23	+1.4
3,824,319	-		GFF3782	0.27	+0.6
3,824,325	-		GFF3782	0.28	-1.6
3,824,360	+		GFF3782	0.32	+0.6
3,824,431	+		GFF3782	0.41	+0.8
3,824,460	+		GFF3782	0.44	+0.5
3,824,484	-		GFF3782	0.47	+0.1
3,824,613	+		GFF3782	0.62	-0.1
3,824,621	-		GFF3782	0.63	+1.1
3,824,631	-		GFF3782	0.64	-1.0
3,824,655	+		GFF3782	0.67	-0.1
3,824,663	+		GFF3782	0.68	+0.7
3,824,663	+		GFF3782	0.68	+0.1
3,824,663	+		GFF3782	0.68	+0.6
3,824,663	+		GFF3782	0.68	+0.8
3,824,663	+		GFF3782	0.68	+0.5
3,824,671	-		GFF3782	0.69	+1.5
3,824,688	+		GFF3782	0.71	-0.8
3,824,697	+		GFF3782	0.72	-0.1
3,824,697	+		GFF3782	0.72	+1.7
3,824,697	+		GFF3782	0.72	+0.8
3,824,697	+		GFF3782	0.72	-1.3
3,824,705	-		GFF3782	0.73	-1.6
3,824,705	-		GFF3782	0.73	-2.4
3,824,705	-		GFF3782	0.73	+0.9
3,824,751	+		GFF3782	0.79	+1.2
3,824,751	+		GFF3782	0.79	+0.7
3,824,759	-		GFF3782	0.79	+0.2
3,824,759	-		GFF3782	0.79	-0.8
3,824,759	-		GFF3782	0.79	-0.8
3,824,759	-		GFF3782	0.79	+0.8
3,824,759	-		GFF3782	0.79	+2.5
3,824,759	-		GFF3782	0.79	+1.8
3,824,759	-		GFF3782	0.79	-0.8
3,824,770	+		GFF3782	0.81	+0.6
3,824,778	-		GFF3782	0.82	-0.4
3,824,778	-		GFF3782	0.82	-0.8
3,824,785	+		GFF3782	0.83	+0.6
3,824,788	-		GFF3782	0.83	-0.7
3,824,874	-				+0.3
3,824,892	+				-0.3
3,824,900	-				+1.4
3,824,905	-				+0.7
3,824,949	+				+0.0
3,825,100	+				-2.8
3,825,103	+				-1.5
3,825,150	-				-1.2
3,825,191	+				-2.5
3,825,232	+		GFF3783	0.11	-1.2
3,825,243	-		GFF3783	0.12	-0.2
3,825,250	+		GFF3783	0.12	-0.2
3,825,250	+		GFF3783	0.12	-0.2
3,825,275	+		GFF3783	0.14	-3.4
3,825,275	-		GFF3783	0.14	-0.8
3,825,306	-		GFF3783	0.16	-0.8
3,825,343	+		GFF3783	0.18	-0.4
3,825,361	+		GFF3783	0.19	-2.3
3,825,388	+		GFF3783	0.21	-1.7
3,825,393	+		GFF3783	0.21	+0.4
3,825,502	-		GFF3783	0.28	-1.2
3,825,504	+		GFF3783	0.28	-0.2
3,825,543	-		GFF3783	0.31	-2.3
3,825,592	+		GFF3783	0.34	-2.7
3,825,592	+		GFF3783	0.34	-1.6
3,825,599	-		GFF3783	0.34	-1.5
3,825,600	-		GFF3783	0.34	-1.8
3,825,600	-		GFF3783	0.34	-1.2
3,825,600	-		GFF3783	0.34	-0.2
3,825,600	-		GFF3783	0.34	-1.9
3,825,626	+		GFF3783	0.36	-1.3
3,825,667	-		GFF3783	0.38	-2.4
3,825,770	+		GFF3783	0.45	+0.4
3,825,776	-		GFF3783	0.45	+0.1
3,825,778	-		GFF3783	0.45	-0.4
3,825,981	+		GFF3783	0.58	-2.4
3,826,017	-		GFF3783	0.60	-1.6
3,826,054	+		GFF3783	0.62	-0.8
3,826,107	+		GFF3783	0.65	-2.3
3,826,121	-		GFF3783	0.66	-1.8
3,826,123	+		GFF3783	0.66	-0.8
3,826,131	-		GFF3783	0.67	-2.2
3,826,131	-		GFF3783	0.67	-0.9
3,826,131	-		GFF3783	0.67	+0.1
3,826,194	-		GFF3783	0.71	+0.6
3,826,196	+		GFF3783	0.71	-1.7
3,826,196	+		GFF3783	0.71	+0.2
3,826,204	-		GFF3783	0.71	-0.8
3,826,228	+		GFF3783	0.73	-1.8
3,826,228	+		GFF3783	0.73	-1.2
3,826,228	+		GFF3783	0.73	+0.3
3,826,228	+		GFF3783	0.73	-1.0
3,826,228	+		GFF3783	0.73	-2.3
3,826,228	+		GFF3783	0.73	-1.4
3,826,228	+		GFF3783	0.73	-1.0
3,826,236	-		GFF3783	0.73	-0.7
3,826,236	-		GFF3783	0.73	-2.3
3,826,236	-		GFF3783	0.73	-1.0
3,826,236	-		GFF3783	0.73	-0.8
3,826,236	-		GFF3783	0.73	-0.9
3,826,236	-		GFF3783	0.73	-1.4
3,826,236	-		GFF3783	0.73	-0.9
3,826,242	+		GFF3783	0.74	-0.5
3,826,311	+		GFF3783	0.78	-2.7
3,826,368	-		GFF3783	0.81	-0.8
3,826,422	+		GFF3783	0.85	-0.6
3,826,430	-		GFF3783	0.85	-1.4
3,826,491	+		GFF3783	0.89	-0.4
3,826,509	-				-1.2
3,826,554	-				-1.3
3,826,561	+				-1.8
3,826,561	+				-1.7
3,826,561	+				-1.1
3,826,569	-				-0.3
3,826,569	-				-0.3
3,826,569	-				+0.4
3,826,569	-				-2.2
3,826,569	-				-0.3
3,826,569	-				-2.7
3,826,574	+				-2.2
3,826,580	-				-1.8
3,826,587	-				+0.7
3,826,702	+				-1.2
3,826,708	+		GFF3784	0.12	-2.2
3,826,729	+		GFF3784	0.20	-0.0
3,826,818	-		GFF3784	0.55	+0.2
3,826,857	+		GFF3784	0.71	-0.4
3,827,005	+				-1.7
3,827,005	+				+1.1
3,827,005	+				-0.0
3,827,005	+				-0.2
3,827,010	+				-0.3
3,827,013	-				-1.1
3,827,015	-				-0.2
3,827,017	+				-0.3
3,827,040	-				+0.8
3,827,040	-				-1.5
3,827,050	-				+1.3
3,827,067	-				-0.0
3,827,075	-				-2.0
3,827,075	-				-0.3
3,827,101	+				-0.9
3,827,101	+				-0.4
3,827,101	+				-0.1
3,827,106	+				-1.3
3,827,155	+				-0.4
3,827,155	+				-0.2
3,827,198	+				-1.0
3,827,198	+				-2.3
3,827,206	-				+0.6
3,827,206	-				-2.3
3,827,206	-				-0.2
3,827,206	-				-0.2
3,827,206	-				+0.4
3,827,213	-		GFF3785	0.10	-1.9
3,827,218	-		GFF3785	0.11	-0.2
3,827,254	+		GFF3785	0.15	+0.9
3,827,277	+		GFF3785	0.17	-0.8
3,827,292	+		GFF3785	0.19	-0.9
3,827,300	-		GFF3785	0.20	-1.0
3,827,321	-		GFF3785	0.22	-0.2
3,827,331	+		GFF3785	0.23	+0.8
3,827,339	-		GFF3785	0.24	+0.2
3,827,346	+		GFF3785	0.25	-0.8
3,827,347	-		GFF3785	0.25	+1.1
3,827,354	-		GFF3785	0.25	-0.6
3,827,354	-		GFF3785	0.25	-0.3
3,827,354	-		GFF3785	0.25	-0.4
3,827,379	-		GFF3785	0.28	+1.5
3,827,391	+		GFF3785	0.29	-2.5
3,827,404	-		GFF3785	0.31	+0.5
3,827,463	-		GFF3785	0.37	-1.2
3,827,472	+		GFF3785	0.38	-0.2
3,827,480	-		GFF3785	0.39	+1.0
3,827,487	-		GFF3785	0.40	-0.6
3,827,508	+		GFF3785	0.42	-1.0
3,827,508	+		GFF3785	0.42	-1.8
3,827,516	-		GFF3785	0.43	+0.4
3,827,516	-		GFF3785	0.43	-1.2
3,827,516	-		GFF3785	0.43	+0.4
3,827,516	-		GFF3785	0.43	+0.8
3,827,516	-		GFF3785	0.43	-0.2
3,827,527	+		GFF3785	0.44	-0.3
3,827,577	+		GFF3785	0.49	-1.8
3,827,583	+		GFF3785	0.50	+0.4
3,827,590	-		GFF3785	0.51	+0.5
3,827,611	+		GFF3785	0.53	+0.4
3,827,619	-		GFF3785	0.54	-0.3
3,827,636	+		GFF3785	0.56	-1.3
3,827,637	-		GFF3785	0.56	-2.2
3,827,643	+		GFF3785	0.57	+0.2
3,827,649	+		GFF3785	0.57	-0.5
3,827,649	+		GFF3785	0.57	+1.0
3,827,649	+		GFF3785	0.57	+0.1
3,827,651	-		GFF3785	0.57	-1.1
3,827,651	-		GFF3785	0.57	-2.0