Strain Fitness in Sphingobium sp. HT1-2 around GFF3779

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,819,735	-		GFF3778	0.66	+1.6
3,819,785	-		GFF3778	0.68	-0.4
3,819,795	-		GFF3778	0.69	+0.2
3,820,668	+				-1.7
3,820,671	-				+0.7
3,820,682	-				+0.6
3,820,682	-				+0.5
3,820,682	-				+0.8
3,820,709	-				-0.7
3,820,728	-				+0.7
3,820,728	-				-1.0
3,820,730	-				-0.5
3,820,747	+				+0.1
3,820,755	-				-0.2
3,820,788	-				+0.3
3,820,793	-				-1.9
3,820,798	-				-1.0
3,820,838	+		GFF3779	0.11	-0.3
3,820,875	+		GFF3779	0.14	-0.1
3,820,875	+		GFF3779	0.14	+0.3
3,820,883	-		GFF3779	0.15	-1.0
3,820,908	-		GFF3779	0.17	-0.2
3,820,908	-		GFF3779	0.17	-2.2
3,820,923	+		GFF3779	0.18	-2.0
3,820,924	-		GFF3779	0.18	-0.3
3,820,969	+		GFF3779	0.23	+0.2
3,820,974	+		GFF3779	0.23	+0.1
3,821,014	+		GFF3779	0.27	-0.0
3,821,015	-		GFF3779	0.27	-1.4
3,821,042	+		GFF3779	0.29	-0.3
3,821,042	+		GFF3779	0.29	-2.9
3,821,042	+		GFF3779	0.29	-0.5
3,821,042	-		GFF3779	0.29	-1.2
3,821,043	-		GFF3779	0.29	-0.1
3,821,050	-		GFF3779	0.30	+0.4
3,821,077	+		GFF3779	0.32	-0.7
3,821,098	+		GFF3779	0.34	-1.1
3,821,103	+		GFF3779	0.35	+0.4
3,821,103	+		GFF3779	0.35	-0.6
3,821,103	+		GFF3779	0.35	-0.6
3,821,111	-		GFF3779	0.36	-0.7
3,821,111	-		GFF3779	0.36	-0.8
3,821,111	-		GFF3779	0.36	-0.3
3,821,111	-		GFF3779	0.36	-1.3
3,821,142	+		GFF3779	0.38	+1.1
3,821,168	+		GFF3779	0.41	+0.7
3,821,170	-		GFF3779	0.41	-0.4
3,821,176	-		GFF3779	0.41	-1.2
3,821,226	-		GFF3779	0.46	+0.4
3,821,228	+		GFF3779	0.46	-1.9
3,821,233	+		GFF3779	0.47	+0.8
3,821,233	+		GFF3779	0.47	-0.1
3,821,233	+		GFF3779	0.47	-1.8
3,821,233	+		GFF3779	0.47	-0.2
3,821,241	-		GFF3779	0.47	+0.4
3,821,241	-		GFF3779	0.47	+0.0
3,821,241	-		GFF3779	0.47	-1.3
3,821,251	-		GFF3779	0.48	-0.2
3,821,253	+		GFF3779	0.49	+0.7
3,821,253	+		GFF3779	0.49	-0.8
3,821,261	-		GFF3779	0.49	-0.2
3,821,261	-		GFF3779	0.49	-1.0
3,821,261	-		GFF3779	0.49	-0.9
3,821,263	+		GFF3779	0.49	+0.0
3,821,288	+		GFF3779	0.52	-0.9
3,821,288	+		GFF3779	0.52	+0.7
3,821,314	+		GFF3779	0.54	-0.2
3,821,319	+		GFF3779	0.55	+0.8
3,821,319	+		GFF3779	0.55	-0.6
3,821,319	+		GFF3779	0.55	-1.4
3,821,319	+		GFF3779	0.55	-0.8
3,821,319	+		GFF3779	0.55	+0.4
3,821,319	+		GFF3779	0.55	+0.2
3,821,319	+		GFF3779	0.55	+1.1
3,821,319	+		GFF3779	0.55	+0.6
3,821,320	+		GFF3779	0.55	-2.6
3,821,323	-		GFF3779	0.55	-0.4
3,821,325	+		GFF3779	0.55	-2.0
3,821,325	+		GFF3779	0.55	+0.2
3,821,325	+		GFF3779	0.55	-1.4
3,821,325	+		GFF3779	0.55	-0.9
3,821,325	+		GFF3779	0.55	+0.2
3,821,325	+		GFF3779	0.55	-0.4
3,821,327	-		GFF3779	0.55	-2.3
3,821,327	-		GFF3779	0.55	+0.6
3,821,327	-		GFF3779	0.55	+0.4
3,821,327	-		GFF3779	0.55	-1.0
3,821,331	+		GFF3779	0.56	+0.3
3,821,333	-		GFF3779	0.56	-0.0
3,821,333	-		GFF3779	0.56	-0.9
3,821,333	-		GFF3779	0.56	+0.2
3,821,333	-		GFF3779	0.56	-0.4
3,821,333	-		GFF3779	0.56	-0.2
3,821,333	-		GFF3779	0.56	+0.4
3,821,338	+		GFF3779	0.56	+1.2
3,821,343	+		GFF3779	0.57	-1.7
3,821,380	-		GFF3779	0.60	+0.4
3,821,386	+		GFF3779	0.61	-1.4
3,821,394	-		GFF3779	0.61	-0.7
3,821,394	-		GFF3779	0.61	+0.3
3,821,396	+		GFF3779	0.62	+0.5
3,821,396	+		GFF3779	0.62	+0.1
3,821,396	+		GFF3779	0.62	+1.3
3,821,447	+		GFF3779	0.66	+0.7
3,821,447	+		GFF3779	0.66	-0.5
3,821,452	+		GFF3779	0.67	-1.5
3,821,455	-		GFF3779	0.67	-1.1
3,821,455	-		GFF3779	0.67	-0.2
3,821,460	-		GFF3779	0.67	-1.9
3,821,460	-		GFF3779	0.67	+0.1
3,821,460	-		GFF3779	0.67	-1.2
3,821,460	-		GFF3779	0.67	-0.8
3,821,465	-		GFF3779	0.68	-1.1
3,821,465	-		GFF3779	0.68	-0.2
3,821,472	+		GFF3779	0.69	-1.0
3,821,472	+		GFF3779	0.69	-0.9
3,821,480	-		GFF3779	0.69	+0.5
3,821,480	-		GFF3779	0.69	-1.5
3,821,480	-		GFF3779	0.69	+0.8
3,821,512	+		GFF3779	0.72	-0.6
3,821,516	-		GFF3779	0.73	+1.0
3,821,524	-		GFF3779	0.73	+0.5
3,821,524	-		GFF3779	0.73	+0.2
3,821,571	+		GFF3779	0.78	+0.7
3,821,573	+		GFF3779	0.78	+0.4
3,821,573	+		GFF3779	0.78	-1.7
3,821,573	+		GFF3779	0.78	+0.5
3,821,581	-		GFF3779	0.79	-0.0
3,821,581	-		GFF3779	0.79	-0.3
3,821,581	-		GFF3779	0.79	-1.4
3,821,625	-		GFF3779	0.83	-1.0
3,821,625	-		GFF3779	0.83	-1.4
3,821,627	-		GFF3779	0.83	-0.7
3,821,664	+		GFF3779	0.86	-2.4
3,821,664	+		GFF3779	0.86	-0.1
3,821,669	-		GFF3779	0.87	-0.0
3,821,669	-		GFF3779	0.87	+0.3
3,821,669	-		GFF3779	0.87	-0.7
3,821,669	-		GFF3779	0.87	+0.1
3,821,672	-		GFF3779	0.87	+0.8
3,821,692	+		GFF3779	0.89	-0.2
3,821,692	-		GFF3779	0.89	-0.3
3,821,692	-		GFF3779	0.89	-0.7
3,821,697	-		GFF3779	0.89	-0.0
3,821,699	-		GFF3779	0.89	-0.7
3,821,717	-				-0.5
3,821,717	-				-1.5
3,821,729	+				-1.3
3,821,755	-				+0.5
3,821,758	-				+0.6
3,821,758	-				-1.2
3,821,764	-				+0.0
3,821,783	-				-0.3
3,821,785	+				-0.2
3,821,785	+				+1.0
3,821,793	-				+0.9
3,821,793	-				-1.8
3,821,811	+				+0.0
3,821,819	-				+0.9
3,821,840	+				-0.8
3,821,840	+				-1.1
3,821,840	+				+0.8
3,821,840	+				-0.0
3,821,840	+				-0.8
3,821,840	+				-1.4
3,821,840	+				-0.8
3,821,840	+				-0.3
3,821,840	+				+0.7
3,821,840	+				+0.4
3,821,840	+				+1.4
3,821,840	+				-1.9
3,821,840	+				-2.2
3,821,840	+				-0.4
3,821,843	-				-0.2
3,821,848	-				-0.8
3,821,848	-				-1.1
3,821,848	-				-0.9
3,821,848	-				-1.0
3,821,848	-				-0.5
3,821,848	-				+0.2
3,821,848	-				+0.8
3,821,895	-				-0.8
3,821,901	+				-0.4
3,821,901	+				-1.0
3,821,912	+				-0.9
3,821,925	+				-2.2
3,821,959	+				+0.5
3,821,959	+				-1.1
3,821,959	+				+0.3
3,821,964	+				+0.3
3,821,967	-				-2.1
3,821,967	-				+0.5
3,821,967	-				-1.2
3,821,976	-				+0.1
3,821,980	+				-2.7
3,821,992	+				-1.2
3,822,016	+		GFF3780	0.12	-0.9
3,822,016	+		GFF3780	0.12	-0.6
3,822,024	-		GFF3780	0.13	-0.9
3,822,026	-		GFF3780	0.14	+0.3
3,822,030	+		GFF3780	0.14	-1.0
3,822,030	+		GFF3780	0.14	-0.3
3,822,030	+		GFF3780	0.14	+0.8
3,822,030	+		GFF3780	0.14	-0.0
3,822,030	+		GFF3780	0.14	+1.0
3,822,030	+		GFF3780	0.14	-0.5
3,822,030	+		GFF3780	0.14	-0.5
3,822,038	+		GFF3780	0.15	-0.6
3,822,038	+		GFF3780	0.15	-0.3
3,822,038	+		GFF3780	0.15	+0.4
3,822,038	-		GFF3780	0.15	-0.8
3,822,038	-		GFF3780	0.15	-1.5
3,822,038	-		GFF3780	0.15	-2.0
3,822,038	-		GFF3780	0.15	-0.4
3,822,038	-		GFF3780	0.15	-1.2
3,822,038	-		GFF3780	0.15	+0.3
3,822,038	-		GFF3780	0.15	-1.3
3,822,038	-		GFF3780	0.15	+0.5
3,822,038	-		GFF3780	0.15	+0.9
3,822,055	+		GFF3780	0.17	-0.5
3,822,055	+		GFF3780	0.17	+1.0
3,822,055	+		GFF3780	0.17	-1.5
3,822,055	+		GFF3780	0.17	-0.3
3,822,055	+		GFF3780	0.17	-1.0
3,822,055	+		GFF3780	0.17	-0.0
3,822,056	-		GFF3780	0.17	-1.0
3,822,063	-		GFF3780	0.18	-0.5
3,822,063	-		GFF3780	0.18	+1.1
3,822,063	-		GFF3780	0.18	+0.2
3,822,063	-		GFF3780	0.18	-1.1
3,822,065	+		GFF3780	0.18	+1.0
3,822,068	-		GFF3780	0.19	+0.7
3,822,073	-		GFF3780	0.19	+0.5
3,822,073	-		GFF3780	0.19	+0.7
3,822,073	-		GFF3780	0.19	-1.7
3,822,073	-		GFF3780	0.19	-1.3
3,822,078	-		GFF3780	0.20	-2.4
3,822,094	-		GFF3780	0.22	-0.2
3,822,096	+		GFF3780	0.22	-1.2
3,822,096	+		GFF3780	0.22	-0.3
3,822,096	+		GFF3780	0.22	+0.4
3,822,097	+		GFF3780	0.22	-1.1
3,822,105	+		GFF3780	0.23	-1.6
3,822,119	-		GFF3780	0.25	-0.2
3,822,119	-		GFF3780	0.25	-1.7
3,822,119	-		GFF3780	0.25	-1.5
3,822,126	-		GFF3780	0.26	-0.3
3,822,127	-		GFF3780	0.26	+0.6
3,822,127	-		GFF3780	0.26	+0.2
3,822,147	-		GFF3780	0.29	-1.9
3,822,162	-		GFF3780	0.30	-1.9
3,822,178	+		GFF3780	0.32	-1.7
3,822,183	-		GFF3780	0.33	+1.5
3,822,183	-		GFF3780	0.33	+0.1
3,822,188	-		GFF3780	0.34	+0.4
3,822,199	-		GFF3780	0.35	-0.7
3,822,202	+		GFF3780	0.35	-1.0
3,822,210	-		GFF3780	0.36	-0.4
3,822,210	-		GFF3780	0.36	+0.3
3,822,222	+		GFF3780	0.38	-0.8
3,822,222	+		GFF3780	0.38	-0.1
3,822,230	-		GFF3780	0.39	-0.3
3,822,232	+		GFF3780	0.39	-0.1
3,822,232	+		GFF3780	0.39	+0.5
3,822,232	+		GFF3780	0.39	-0.1
3,822,232	+		GFF3780	0.39	-0.4
3,822,232	+		GFF3780	0.39	-1.4
3,822,232	+		GFF3780	0.39	+0.5
3,822,235	-		GFF3780	0.39	+0.1
3,822,235	-		GFF3780	0.39	-1.3
3,822,240	-		GFF3780	0.40	+1.3
3,822,248	-		GFF3780	0.41	-0.4
3,822,248	-		GFF3780	0.41	-1.7
3,822,290	+		GFF3780	0.46	-0.2
3,822,291	+		GFF3780	0.46	+0.7
3,822,306	-		GFF3780	0.48	-0.6
3,822,307	-		GFF3780	0.48	+0.4
3,822,319	+		GFF3780	0.50	+0.4
3,822,319	+		GFF3780	0.50	+1.1
3,822,319	+		GFF3780	0.50	-0.5
3,822,319	+		GFF3780	0.50	-1.7
3,822,324	+		GFF3780	0.50	-0.3
3,822,325	+		GFF3780	0.51	-0.5
3,822,325	-		GFF3780	0.51	+0.1
3,822,327	-		GFF3780	0.51	+1.4
3,822,327	-		GFF3780	0.51	-1.7
3,822,327	-		GFF3780	0.51	-0.2
3,822,327	-		GFF3780	0.51	+0.5
3,822,329	+		GFF3780	0.51	-0.3
3,822,332	-		GFF3780	0.51	-0.4
3,822,333	-		GFF3780	0.52	+0.7
3,822,333	-		GFF3780	0.52	+0.5
3,822,382	+		GFF3780	0.58	-1.4
3,822,401	+		GFF3780	0.60	-1.5
3,822,401	+		GFF3780	0.60	-1.0
3,822,401	+		GFF3780	0.60	-0.6
3,822,401	+		GFF3780	0.60	-0.2
3,822,401	+		GFF3780	0.60	-0.9
3,822,401	+		GFF3780	0.60	-0.9
3,822,409	-		GFF3780	0.61	-1.2
3,822,409	-		GFF3780	0.61	-1.9
3,822,409	-		GFF3780	0.61	-0.4
3,822,409	-		GFF3780	0.61	-0.2
3,822,409	-		GFF3780	0.61	-0.5
3,822,409	-		GFF3780	0.61	+0.2
3,822,409	-		GFF3780	0.61	-2.2
3,822,409	-		GFF3780	0.61	+1.9
3,822,414	-		GFF3780	0.62	+1.4
3,822,417	+		GFF3780	0.62	+0.5
3,822,417	+		GFF3780	0.62	+1.1
3,822,419	+		GFF3780	0.62	+1.2
3,822,419	+		GFF3780	0.62	+0.7
3,822,419	+		GFF3780	0.62	-0.5
3,822,419	+		GFF3780	0.62	+0.4
3,822,419	+		GFF3780	0.62	-1.1
3,822,426	-		GFF3780	0.63	-2.0
3,822,437	+		GFF3780	0.64	-0.3
3,822,437	-		GFF3780	0.64	-2.2
3,822,481	+		GFF3780	0.70	-0.4
3,822,481	+		GFF3780	0.70	-0.5
3,822,487	+		GFF3780	0.71	-0.8
3,822,489	+		GFF3780	0.71	-0.4
3,822,495	-		GFF3780	0.72	-0.4
3,822,495	-		GFF3780	0.72	+0.4
3,822,511	+		GFF3780	0.74	+0.9
3,822,513	-		GFF3780	0.74	-1.0
3,822,519	-		GFF3780	0.75	-0.6
3,822,519	-		GFF3780	0.75	+0.5
3,822,524	+		GFF3780	0.75	+0.8
3,822,532	-		GFF3780	0.76	+0.1
3,822,534	+		GFF3780	0.76	+0.3
3,822,542	-		GFF3780	0.77	+1.1
3,822,542	-		GFF3780	0.77	+0.6
3,822,544	+		GFF3780	0.78	-0.4
3,822,590	+		GFF3780	0.83	-0.2
3,822,592	-		GFF3780	0.84	+0.3
3,822,597	-		GFF3780	0.84	+0.6
3,822,615	+		GFF3780	0.86	+1.0
3,822,628	+		GFF3780	0.88	-0.9
3,822,642	+		GFF3780	0.90	-1.2
3,822,644	-				-0.7
3,822,670	+				+0.0
3,822,670	+				+0.8
3,822,678	-				-0.5
3,822,700	-				-0.1
3,822,708	+				-0.7
3,822,716	-				+0.9
3,822,717	+				-0.5
3,822,717	+				-0.0
3,822,724	+				+1.1
3,822,724	+				+0.9
3,822,724	+				-1.7
3,822,725	-				+0.4
3,822,725	-				-0.0
3,822,725	-				+0.2
3,822,732	-				-2.4
3,822,733	-				+1.0
3,822,736	+				-0.0
3,822,736	+				-0.7
3,822,744	-				-0.9
3,822,782	+				+0.1
3,822,783	+				+0.4
3,822,791	-				-1.8