Strain Fitness in Sphingobium sp. HT1-2 around GFF3744

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,784,873	+		GFF3743	0.31	+0.2
3,784,917	+		GFF3743	0.34	-1.8
3,784,925	-		GFF3743	0.34	+0.6
3,784,927	+		GFF3743	0.35	-2.3
3,784,935	-		GFF3743	0.35	+0.1
3,784,958	-		GFF3743	0.37	-2.3
3,784,969	-		GFF3743	0.38	-0.4
3,784,977	+		GFF3743	0.38	-0.7
3,784,977	+		GFF3743	0.38	-0.3
3,784,977	+		GFF3743	0.38	-0.7
3,784,977	+		GFF3743	0.38	-2.5
3,784,977	+		GFF3743	0.38	-1.3
3,784,977	+		GFF3743	0.38	-0.7
3,784,977	+		GFF3743	0.38	-1.4
3,784,985	-		GFF3743	0.39	+0.4
3,784,985	-		GFF3743	0.39	-0.1
3,784,985	-		GFF3743	0.39	-0.1
3,784,985	-		GFF3743	0.39	-0.0
3,784,995	-		GFF3743	0.39	+1.1
3,785,000	+		GFF3743	0.40	+0.3
3,785,000	+		GFF3743	0.40	-0.0
3,785,002	+		GFF3743	0.40	-3.2
3,785,002	+		GFF3743	0.40	-1.7
3,785,010	-		GFF3743	0.40	-0.8
3,785,010	-		GFF3743	0.40	+0.6
3,785,038	-		GFF3743	0.42	-0.8
3,785,071	-		GFF3743	0.45	-1.3
3,785,081	+		GFF3743	0.45	-0.7
3,785,086	-		GFF3743	0.46	-1.6
3,785,089	-		GFF3743	0.46	-0.5
3,785,089	-		GFF3743	0.46	+0.9
3,785,098	+		GFF3743	0.47	-0.1
3,785,100	+		GFF3743	0.47	+1.6
3,785,108	-		GFF3743	0.47	-2.4
3,785,136	-		GFF3743	0.49	-0.7
3,785,143	-		GFF3743	0.50	-0.4
3,785,145	-		GFF3743	0.50	-2.7
3,785,153	+		GFF3743	0.51	+0.8
3,785,153	+		GFF3743	0.51	-0.2
3,785,167	+		GFF3743	0.52	+0.2
3,785,192	-		GFF3743	0.53	-0.0
3,785,197	+		GFF3743	0.54	-2.0
3,785,216	+		GFF3743	0.55	+0.5
3,785,216	+		GFF3743	0.55	+1.2
3,785,216	+		GFF3743	0.55	+1.0
3,785,216	+		GFF3743	0.55	+0.7
3,785,216	+		GFF3743	0.55	+0.5
3,785,216	+		GFF3743	0.55	-1.5
3,785,224	-		GFF3743	0.56	-0.9
3,785,224	-		GFF3743	0.56	-1.5
3,785,224	-		GFF3743	0.56	-0.6
3,785,224	-		GFF3743	0.56	-0.1
3,785,231	+		GFF3743	0.56	-0.4
3,785,231	-		GFF3743	0.56	+0.2
3,785,237	-		GFF3743	0.56	+0.9
3,785,237	-		GFF3743	0.56	+0.1
3,785,237	-		GFF3743	0.56	+1.3
3,785,237	-		GFF3743	0.56	-1.0
3,785,239	+		GFF3743	0.57	+0.0
3,785,240	+		GFF3743	0.57	-1.1
3,785,247	-		GFF3743	0.57	-0.6
3,785,247	-		GFF3743	0.57	+0.7
3,785,263	+		GFF3743	0.58	-0.8
3,785,308	+		GFF3743	0.62	-1.4
3,785,308	+		GFF3743	0.62	+0.5
3,785,308	+		GFF3743	0.62	-0.5
3,785,311	-		GFF3743	0.62	-1.9
3,785,316	-		GFF3743	0.62	-0.7
3,785,316	-		GFF3743	0.62	-0.4
3,785,316	-		GFF3743	0.62	-0.5
3,785,316	-		GFF3743	0.62	-2.0
3,785,338	-		GFF3743	0.64	-0.1
3,785,338	-		GFF3743	0.64	-1.4
3,785,338	-		GFF3743	0.64	+0.0
3,785,365	+		GFF3743	0.66	-0.6
3,785,365	+		GFF3743	0.66	-1.6
3,785,371	-		GFF3743	0.66	-1.1
3,785,371	-		GFF3743	0.66	+0.4
3,785,371	-		GFF3743	0.66	-0.9
3,785,373	-		GFF3743	0.66	-0.8
3,785,373	-		GFF3743	0.66	-1.1
3,785,384	-		GFF3743	0.67	+0.8
3,785,392	-		GFF3743	0.67	-0.6
3,785,418	+		GFF3743	0.69	-0.4
3,785,421	-		GFF3743	0.69	-0.4
3,785,445	+		GFF3743	0.71	-1.1
3,785,453	-		GFF3743	0.72	+0.4
3,785,493	+		GFF3743	0.75	-0.6
3,785,493	+		GFF3743	0.75	-1.7
3,785,500	+		GFF3743	0.75	-0.6
3,785,518	+		GFF3743	0.76	+0.3
3,785,518	+		GFF3743	0.76	+1.0
3,785,518	+		GFF3743	0.76	-0.2
3,785,560	+		GFF3743	0.79	+0.3
3,785,560	+		GFF3743	0.79	+0.4
3,785,589	+		GFF3743	0.81	-0.6
3,785,598	+		GFF3743	0.82	+0.4
3,785,598	+		GFF3743	0.82	-1.6
3,785,606	+		GFF3743	0.83	+0.6
3,785,606	+		GFF3743	0.83	-2.4
3,785,606	+		GFF3743	0.83	+0.3
3,785,614	-		GFF3743	0.83	-1.3
3,785,614	-		GFF3743	0.83	+0.4
3,785,616	-		GFF3743	0.83	+1.0
3,785,616	-		GFF3743	0.83	+0.8
3,785,623	+		GFF3743	0.84	-0.4
3,785,623	+		GFF3743	0.84	-1.0
3,785,631	-		GFF3743	0.84	-1.3
3,785,631	-		GFF3743	0.84	+0.0
3,785,649	-		GFF3743	0.86	-0.0
3,785,649	-		GFF3743	0.86	+1.4
3,785,650	+		GFF3743	0.86	-1.1
3,785,650	+		GFF3743	0.86	+0.7
3,785,650	+		GFF3743	0.86	-0.3
3,785,650	+		GFF3743	0.86	-1.5
3,785,650	+		GFF3743	0.86	+0.2
3,785,660	+		GFF3743	0.86	+1.0
3,785,660	+		GFF3743	0.86	-0.2
3,785,668	-		GFF3743	0.87	-0.3
3,785,668	-		GFF3743	0.87	-0.3
3,785,668	-		GFF3743	0.87	+0.3
3,785,668	-		GFF3743	0.87	+0.2
3,785,717	+				+1.6
3,785,722	+				-0.0
3,785,730	-				-1.0
3,785,750	+				+0.6
3,785,763	+				-1.3
3,785,768	+				+1.3
3,785,776	-				-0.3
3,785,782	-				+0.4
3,785,798	+				+0.7
3,785,798	+				-0.3
3,785,798	+				-1.4
3,785,798	+				-0.2
3,785,798	+				+0.0
3,785,799	-				-0.2
3,785,806	-				+0.3
3,785,806	-				-2.6
3,785,806	-				-1.2
3,785,806	-				-0.5
3,785,841	-				-0.2
3,785,841	-				-0.3
3,785,845	+				-0.3
3,785,885	-				+0.6
3,785,892	-				-1.4
3,785,899	-				+0.2
3,785,904	+				-0.1
3,785,904	+				+1.1
3,785,917	-		GFF3744	0.12	+0.7
3,785,917	-		GFF3744	0.12	-0.8
3,785,966	+		GFF3744	0.24	+0.5
3,785,966	+		GFF3744	0.24	-1.1
3,785,966	+		GFF3744	0.24	+0.3
3,785,974	-		GFF3744	0.26	+1.0
3,785,974	-		GFF3744	0.26	+1.3
3,786,020	-		GFF3744	0.38	+0.2
3,786,026	-		GFF3744	0.39	-1.2
3,786,037	+		GFF3744	0.42	+0.1
3,786,037	+		GFF3744	0.42	-3.0
3,786,037	+		GFF3744	0.42	-0.4
3,786,037	+		GFF3744	0.42	+0.4
3,786,045	-		GFF3744	0.44	+1.6
3,786,045	-		GFF3744	0.44	+0.6
3,786,045	-		GFF3744	0.44	-0.8
3,786,096	+		GFF3744	0.57	-0.7
3,786,145	+		GFF3744	0.69	-2.0
3,786,151	-		GFF3744	0.70	-0.2
3,786,151	-		GFF3744	0.70	-0.8
3,786,168	+		GFF3744	0.75	-2.5
3,786,168	+		GFF3744	0.75	-1.4
3,786,173	+		GFF3744	0.76	-0.1
3,786,176	-		GFF3744	0.77	+0.4
3,786,176	-		GFF3744	0.77	-0.5
3,786,178	+		GFF3744	0.77	-0.2
3,786,178	+		GFF3744	0.77	-1.2
3,786,178	+		GFF3744	0.77	+0.4
3,786,181	-		GFF3744	0.78	+0.3
3,786,186	-		GFF3744	0.79	+1.9
3,786,186	-		GFF3744	0.79	-2.5
3,786,193	-		GFF3744	0.81	+0.1
3,786,196	-		GFF3744	0.82	-1.6
3,786,202	+		GFF3744	0.83	-0.3
3,786,207	+		GFF3744	0.84	-0.7
3,786,212	+		GFF3744	0.86	-0.2
3,786,212	+		GFF3744	0.86	-0.4
3,786,215	-		GFF3744	0.86	+0.6
3,786,220	-		GFF3744	0.88	+0.7
3,786,258	+				-0.6
3,786,263	+				-2.0
3,786,263	+				-1.3
3,786,263	+				+1.3
3,786,263	+				-0.2
3,786,271	-				-1.0
3,786,271	-				+0.1
3,786,271	-				-1.1
3,786,288	+				-0.2
3,786,288	+				+0.0
3,786,288	+				+0.8
3,786,288	+				-1.7
3,786,296	+				-0.1
3,786,296	+				-1.6
3,786,296	-				+0.8
3,786,296	-				+0.2
3,786,296	-				+0.2
3,786,296	-				+0.4
3,786,296	-				-0.1
3,786,318	+				-0.0
3,786,320	+				+1.3
3,786,328	-				-0.1
3,786,328	-				-0.6
3,786,330	+				+0.7
3,786,336	-				-0.1
3,786,338	+				-0.7
3,786,346	-				+0.6
3,786,346	-				+0.5
3,786,351	-				-0.4
3,786,351	-				+0.1
3,786,351	-				+0.6
3,786,351	-				+0.0
3,786,401	-				+0.9
3,786,420	-				-0.0
3,786,428	-				-1.0
3,786,435	+				-1.4
3,786,436	+				-0.5