Strain Fitness in Sphingobium sp. HT1-2 around GFF3735

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,778,205	+		GFF3733	0.89	-0.1
3,778,215	+		GFF3733	0.89	+1.2
3,778,242	+				-0.3
3,778,250	+				-0.3
3,778,250	+				-0.2
3,778,250	+				-2.4
3,778,250	+				-0.2
3,778,250	+				+0.6
3,778,250	+				+0.3
3,778,250	+				+0.1
3,778,250	+				-1.4
3,778,250	+				-0.2
3,778,253	+				-1.9
3,778,253	+				+0.6
3,778,253	-				-1.0
3,778,258	-				+1.2
3,778,258	-				+0.2
3,778,258	-				-0.6
3,778,261	-				-0.2
3,778,268	-				+1.1
3,778,277	+				-0.1
3,778,285	-				+0.8
3,778,285	-				-1.5
3,778,302	-				-0.2
3,778,306	+				-2.4
3,778,306	+				-1.5
3,778,314	-				-0.5
3,778,314	-				+0.5
3,778,314	-				+0.2
3,778,318	+				-1.2
3,778,360	-				-0.6
3,778,374	-				+0.1
3,778,384	+				-0.6
3,778,384	-				+0.9
3,778,385	+				-0.4
3,778,385	+				-1.0
3,778,391	+				-0.2
3,778,392	-				-0.2
3,778,393	-				-0.8
3,778,395	+				+0.7
3,778,401	-				-0.6
3,778,425	-				+0.6
3,778,428	-				-0.5
3,778,430	-				-0.2
3,778,435	+				-1.2
3,778,462	+				-0.9
3,778,473	+				-0.3
3,778,473	+				-0.1
3,778,481	-				-1.2
3,778,481	-				-1.6
3,778,493	-				-0.4
3,778,495	-				-0.7
3,778,495	-				+0.3
3,778,507	+				+0.7
3,778,507	+				+0.2
3,778,507	+				-0.4
3,778,513	+				-0.8
3,778,515	-				-0.0
3,778,521	-				+0.4
3,778,521	-				-0.1
3,778,521	-				+0.1
3,778,535	-				+0.2
3,778,535	-				-0.0
3,778,535	-				+0.2
3,778,556	+		GFF3734	0.11	-0.3
3,778,556	+		GFF3734	0.11	-0.2
3,778,564	-		GFF3734	0.12	+0.3
3,778,564	-		GFF3734	0.12	-1.4
3,778,564	-		GFF3734	0.12	+2.2
3,778,593	-		GFF3734	0.17	+1.1
3,778,615	+		GFF3734	0.20	+1.1
3,778,623	-		GFF3734	0.21	+0.5
3,778,623	-		GFF3734	0.21	-0.5
3,778,623	-		GFF3734	0.21	-1.0
3,778,632	-		GFF3734	0.22	+0.3
3,778,634	+		GFF3734	0.23	+1.1
3,778,639	+		GFF3734	0.24	-1.5
3,778,644	+		GFF3734	0.24	+1.1
3,778,645	+		GFF3734	0.24	-0.4
3,778,649	+		GFF3734	0.25	-0.9
3,778,654	+		GFF3734	0.26	-1.4
3,778,687	-		GFF3734	0.31	-1.4
3,778,691	+		GFF3734	0.31	-0.6
3,778,691	+		GFF3734	0.31	+1.4
3,778,691	+		GFF3734	0.31	-0.0
3,778,691	+		GFF3734	0.31	+0.3
3,778,691	+		GFF3734	0.31	-0.8
3,778,697	+		GFF3734	0.32	-1.2
3,778,699	-		GFF3734	0.32	-1.4
3,778,699	-		GFF3734	0.32	+0.2
3,778,701	+		GFF3734	0.33	+1.6
3,778,705	-		GFF3734	0.33	+0.6
3,778,706	+		GFF3734	0.33	+1.3
3,778,739	+		GFF3734	0.38	+0.5
3,778,739	+		GFF3734	0.38	-1.6
3,778,741	-		GFF3734	0.39	-1.0
3,778,747	-		GFF3734	0.40	+0.3
3,778,758	-		GFF3734	0.41	-0.5
3,778,762	+		GFF3734	0.42	-0.0
3,778,763	+		GFF3734	0.42	+0.8
3,778,763	+		GFF3734	0.42	-0.6
3,778,764	+		GFF3734	0.42	+1.2
3,778,765	-		GFF3734	0.42	-0.7
3,778,770	-		GFF3734	0.43	-1.9
3,778,772	+		GFF3734	0.43	+0.8
3,778,782	+		GFF3734	0.45	-1.6
3,778,782	+		GFF3734	0.45	-1.3
3,778,782	+		GFF3734	0.45	-1.0
3,778,782	+		GFF3734	0.45	+0.0
3,778,790	-		GFF3734	0.46	+0.2
3,778,790	-		GFF3734	0.46	-1.0
3,778,792	+		GFF3734	0.46	+1.5
3,778,798	+		GFF3734	0.47	-0.1
3,778,807	-		GFF3734	0.49	-1.6
3,778,808	-		GFF3734	0.49	-2.1
3,778,884	-		GFF3734	0.60	-1.5
3,778,885	-		GFF3734	0.60	-0.8
3,778,885	-		GFF3734	0.60	-1.8
3,778,889	+		GFF3734	0.61	-0.9
3,778,901	+		GFF3734	0.62	-0.7
3,778,911	+		GFF3734	0.64	+1.1
3,778,919	+		GFF3734	0.65	+0.6
3,778,919	+		GFF3734	0.65	-0.4
3,778,919	+		GFF3734	0.65	-0.4
3,778,927	-		GFF3734	0.66	-0.7
3,778,927	-		GFF3734	0.66	-1.9
3,778,929	+		GFF3734	0.67	+1.3
3,778,929	+		GFF3734	0.67	-2.2
3,778,937	-		GFF3734	0.68	-1.5
3,778,937	-		GFF3734	0.68	-0.5
3,778,937	-		GFF3734	0.68	-0.9
3,778,937	-		GFF3734	0.68	-1.5
3,778,937	-		GFF3734	0.68	+0.6
3,778,983	+		GFF3734	0.75	-0.4
3,779,019	-		GFF3734	0.80	-1.4
3,779,026	+		GFF3734	0.81	-0.9
3,779,031	+		GFF3734	0.82	+1.0
3,779,110	-				-1.4
3,779,147	+				-0.5
3,779,155	-				+0.4
3,779,176	-				-1.1
3,779,176	-				-0.4
3,779,183	-				-0.2
3,779,186	+				+0.3
3,779,189	-				+0.8
3,779,189	-				-0.3
3,779,201	-				-0.6
3,779,210	+				+0.7
3,779,258	-				+1.2
3,779,268	-				-1.0
3,779,272	-				-0.5
3,779,288	-				+0.9
3,779,296	+		GFF3735	0.11	-0.4
3,779,296	+		GFF3735	0.11	+0.3
3,779,304	-		GFF3735	0.12	-0.5
3,779,304	-		GFF3735	0.12	-2.1
3,779,304	-		GFF3735	0.12	+0.3
3,779,319	-		GFF3735	0.13	-0.0
3,779,319	-		GFF3735	0.13	+2.3
3,779,355	-		GFF3735	0.17	+0.3
3,779,363	+		GFF3735	0.18	-1.7
3,779,363	-		GFF3735	0.18	+1.4
3,779,371	-		GFF3735	0.19	-0.7
3,779,379	-		GFF3735	0.20	-0.0
3,779,379	-		GFF3735	0.20	+1.0
3,779,400	-		GFF3735	0.22	+1.4
3,779,411	+		GFF3735	0.24	+0.6
3,779,426	-		GFF3735	0.25	+0.5
3,779,433	+		GFF3735	0.26	-1.8
3,779,449	-		GFF3735	0.28	+0.7
3,779,455	+		GFF3735	0.29	+1.1
3,779,455	-		GFF3735	0.29	+0.4
3,779,460	-		GFF3735	0.29	-0.3
3,779,465	-		GFF3735	0.30	+0.5
3,779,483	-		GFF3735	0.32	+0.1
3,779,491	-		GFF3735	0.33	-1.6
3,779,494	+		GFF3735	0.33	-0.6
3,779,494	+		GFF3735	0.33	-1.4
3,779,494	+		GFF3735	0.33	-2.2
3,779,494	+		GFF3735	0.33	-0.2
3,779,499	+		GFF3735	0.34	+0.7
3,779,502	-		GFF3735	0.34	+0.3
3,779,502	-		GFF3735	0.34	-0.9
3,779,505	+		GFF3735	0.34	-0.8
3,779,549	+		GFF3735	0.39	-0.3
3,779,575	+		GFF3735	0.42	-1.0
3,779,583	+		GFF3735	0.43	-1.3
3,779,600	+		GFF3735	0.45	-0.9
3,779,600	+		GFF3735	0.45	+0.1
3,779,600	+		GFF3735	0.45	-0.8
3,779,600	+		GFF3735	0.45	-0.2
3,779,600	+		GFF3735	0.45	+0.4
3,779,600	+		GFF3735	0.45	+1.2
3,779,600	+		GFF3735	0.45	-0.1
3,779,600	+		GFF3735	0.45	-0.7
3,779,600	+		GFF3735	0.45	-0.3
3,779,600	+		GFF3735	0.45	-0.6
3,779,600	+		GFF3735	0.45	-0.2
3,779,608	-		GFF3735	0.46	-0.7
3,779,608	-		GFF3735	0.46	+0.3
3,779,608	-		GFF3735	0.46	+0.2
3,779,608	-		GFF3735	0.46	+1.2
3,779,608	-		GFF3735	0.46	-0.9
3,779,618	+		GFF3735	0.47	+0.1
3,779,626	+		GFF3735	0.48	-0.5
3,779,626	-		GFF3735	0.48	-0.5
3,779,626	-		GFF3735	0.48	-2.0
3,779,637	+		GFF3735	0.49	+1.2
3,779,645	-		GFF3735	0.50	+1.6
3,779,647	+		GFF3735	0.50	-1.2
3,779,655	-		GFF3735	0.51	+0.4
3,779,678	+		GFF3735	0.54	-1.0
3,779,681	-		GFF3735	0.54	-1.0
3,779,681	-		GFF3735	0.54	+0.0
3,779,681	-		GFF3735	0.54	-0.7
3,779,697	+		GFF3735	0.56	+0.1
3,779,707	-		GFF3735	0.57	+0.0
3,779,710	-		GFF3735	0.58	+0.8
3,779,733	-		GFF3735	0.60	+0.4
3,779,750	+		GFF3735	0.62	-0.3
3,779,776	+		GFF3735	0.65	+1.5
3,779,781	+		GFF3735	0.66	-2.3
3,779,781	+		GFF3735	0.66	-1.0
3,779,781	+		GFF3735	0.66	-1.2
3,779,789	-		GFF3735	0.66	-2.0
3,779,789	-		GFF3735	0.66	-0.7
3,779,789	-		GFF3735	0.66	+1.5
3,779,789	-		GFF3735	0.66	+0.2
3,779,797	-		GFF3735	0.67	-1.4
3,779,845	-		GFF3735	0.73	+0.6
3,779,860	+		GFF3735	0.74	-0.2
3,779,883	-		GFF3735	0.77	+0.5
3,779,884	+		GFF3735	0.77	-3.0
3,779,892	-		GFF3735	0.78	+1.1
3,779,892	-		GFF3735	0.78	-1.7
3,779,892	-		GFF3735	0.78	+1.0
3,779,892	-		GFF3735	0.78	-1.2
3,779,894	+		GFF3735	0.78	+1.1
3,779,894	+		GFF3735	0.78	-0.4
3,779,894	+		GFF3735	0.78	-0.6
3,779,894	+		GFF3735	0.78	-0.9
3,779,894	+		GFF3735	0.78	-0.4
3,779,894	+		GFF3735	0.78	+0.5
3,779,894	+		GFF3735	0.78	-0.7
3,779,894	+		GFF3735	0.78	+0.4
3,779,894	+		GFF3735	0.78	+1.2
3,779,894	+		GFF3735	0.78	+0.2
3,779,894	+		GFF3735	0.78	+0.1
3,779,894	+		GFF3735	0.78	-0.6
3,779,894	+		GFF3735	0.78	-0.3
3,779,894	+		GFF3735	0.78	-1.3
3,779,899	+		GFF3735	0.79	-1.2
3,779,902	-		GFF3735	0.79	-0.2
3,779,902	-		GFF3735	0.79	-0.2
3,779,902	-		GFF3735	0.79	-0.6
3,779,902	-		GFF3735	0.79	-1.9
3,779,902	-		GFF3735	0.79	+1.1
3,779,902	-		GFF3735	0.79	+0.3
3,779,902	-		GFF3735	0.79	+0.4
3,779,902	-		GFF3735	0.79	-0.7
3,779,902	-		GFF3735	0.79	+0.1
3,779,902	-		GFF3735	0.79	+0.9
3,779,902	-		GFF3735	0.79	+0.7
3,779,902	-		GFF3735	0.79	-0.2
3,779,902	-		GFF3735	0.79	-1.3
3,779,902	-		GFF3735	0.79	+0.4
3,779,902	-		GFF3735	0.79	+1.4
3,779,902	-		GFF3735	0.79	+1.5
3,779,902	-		GFF3735	0.79	-0.3
3,779,902	-		GFF3735	0.79	+0.7
3,779,902	-		GFF3735	0.79	+0.4
3,779,902	-		GFF3735	0.79	+1.1
3,779,902	-		GFF3735	0.79	+1.6
3,779,902	-		GFF3735	0.79	-0.0
3,779,902	-		GFF3735	0.79	-0.4
3,779,902	-		GFF3735	0.79	-1.4
3,779,904	+		GFF3735	0.79	-0.3
3,779,904	+		GFF3735	0.79	+0.0
3,779,907	-		GFF3735	0.80	+0.2
3,779,907	-		GFF3735	0.80	+1.3
3,779,912	-		GFF3735	0.80	+0.0
3,779,920	+		GFF3735	0.81	+0.8
3,779,935	+		GFF3735	0.83	-0.4
3,779,935	+		GFF3735	0.83	-0.5
3,779,935	+		GFF3735	0.83	-0.1
3,779,935	+		GFF3735	0.83	+0.5
3,779,935	+		GFF3735	0.83	+0.5
3,779,935	+		GFF3735	0.83	+1.7
3,779,943	-		GFF3735	0.84	-1.2
3,779,943	-		GFF3735	0.84	-0.2
3,779,943	-		GFF3735	0.84	+0.5
3,779,943	-		GFF3735	0.84	-0.0
3,779,943	-		GFF3735	0.84	-1.4
3,779,950	+		GFF3735	0.85	+0.2
3,779,958	-		GFF3735	0.86	+0.2
3,779,958	-		GFF3735	0.86	+0.6
3,779,958	-		GFF3735	0.86	-1.0
3,779,959	+		GFF3735	0.86	-0.0
3,779,984	-		GFF3735	0.88	-0.7
3,779,994	-		GFF3735	0.90	-1.3
3,780,000	+				-0.4
3,780,003	-				-0.1
3,780,029	+				+0.4
3,780,029	+				-2.5
3,780,037	-				-1.1
3,780,037	-				-2.0
3,780,037	-				+0.3
3,780,039	-				-0.0
3,780,068	-				-1.4
3,780,070	+				-0.8
3,780,088	+				-0.9
3,780,121	+		GFF3736	0.12	-1.4
3,780,121	+		GFF3736	0.12	-0.8
3,780,121	+		GFF3736	0.12	+0.0
3,780,121	+		GFF3736	0.12	-0.8
3,780,121	+		GFF3736	0.12	+0.4
3,780,121	+		GFF3736	0.12	-1.7
3,780,127	-		GFF3736	0.13	-1.9
3,780,129	-		GFF3736	0.14	-0.5
3,780,129	-		GFF3736	0.14	-0.4
3,780,129	-		GFF3736	0.14	+0.5
3,780,129	-		GFF3736	0.14	-0.5
3,780,161	-		GFF3736	0.23	+0.2
3,780,176	+		GFF3736	0.28	+0.5
3,780,178	+		GFF3736	0.28	+0.7
3,780,186	-		GFF3736	0.31	-0.3
3,780,186	-		GFF3736	0.31	-1.4
3,780,196	+		GFF3736	0.34	-1.3
3,780,201	+		GFF3736	0.35	-0.2
3,780,209	-		GFF3736	0.37	-0.2
3,780,214	-		GFF3736	0.39	+0.7
3,780,219	-		GFF3736	0.40	+0.2
3,780,222	-		GFF3736	0.41	-0.3
3,780,232	+		GFF3736	0.44	+0.5
3,780,232	+		GFF3736	0.44	-0.2
3,780,240	-		GFF3736	0.47	+0.4
3,780,241	-		GFF3736	0.47	-2.1
3,780,244	+		GFF3736	0.48	+0.9
3,780,244	+		GFF3736	0.48	-0.6
3,780,265	-		GFF3736	0.54	-0.1
3,780,265	-		GFF3736	0.54	-1.0
3,780,293	+		GFF3736	0.62	-0.2
3,780,293	+		GFF3736	0.62	-0.7
3,780,296	-		GFF3736	0.63	+1.0
3,780,296	-		GFF3736	0.63	-2.1
3,780,300	+		GFF3736	0.64	+0.2
3,780,301	-		GFF3736	0.65	+0.4
3,780,308	-		GFF3736	0.67	-1.3
3,780,324	+		GFF3736	0.71	+0.3
3,780,324	+		GFF3736	0.71	+0.8
3,780,324	+		GFF3736	0.71	-0.5
3,780,324	+		GFF3736	0.71	+1.7
3,780,324	+		GFF3736	0.71	-0.6
3,780,324	+		GFF3736	0.71	+1.1
3,780,324	+		GFF3736	0.71	+0.2
3,780,330	+		GFF3736	0.73	-0.7
3,780,332	-		GFF3736	0.74	-0.2
3,780,332	-		GFF3736	0.74	+0.8
3,780,332	-		GFF3736	0.74	+0.4
3,780,332	-		GFF3736	0.74	-0.7
3,780,332	-		GFF3736	0.74	-0.4
3,780,348	-		GFF3736	0.78	-0.9
3,780,348	-		GFF3736	0.78	-1.5
3,780,390	-				+0.6
3,780,401	+				-0.4
3,780,409	-				-0.7
3,780,409	-				+0.3
3,780,416	+				+1.4
3,780,416	+				-2.1
3,780,424	-				-1.7
3,780,453	-				+0.5
3,780,477	+				-2.2
3,780,483	+				+1.2
3,780,484	+				-1.1
3,780,509	-				+0.6
3,780,553	+		GFF3737	0.19	+0.6
3,780,556	-		GFF3737	0.20	-0.2
3,780,565	-		GFF3737	0.23	+0.8
3,780,568	+		GFF3737	0.24	-0.0
3,780,606	-		GFF3737	0.39	-0.5
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3,780,635	+		GFF3737	0.50	-0.6
3,780,643	-		GFF3737	0.53	-0.9
3,780,643	-		GFF3737	0.53	+0.3
3,780,647	+		GFF3737	0.54	-0.4
3,780,661	-		GFF3737	0.59	-0.2
3,780,666	-		GFF3737	0.61	-2.3
3,780,673	+		GFF3737	0.64	+1.0
3,780,675	-		GFF3737	0.65	+1.2
3,780,691	-		GFF3737	0.71	+0.8
3,780,715	+		GFF3737	0.80	+0.2
3,780,715	+		GFF3737	0.80	+0.0
3,780,717	-		GFF3737	0.81	-0.1
3,780,717	-		GFF3737	0.81	-0.3
3,780,717	-		GFF3737	0.81	+0.2
3,780,717	-		GFF3737	0.81	-2.7
3,780,723	-		GFF3737	0.83	-0.8
3,780,723	-		GFF3737	0.83	-2.0
3,780,726	+		GFF3737	0.84	+0.1
3,780,749	+				+0.8
3,780,749	+				-0.5
3,780,749	+				-0.3
3,780,757	-				-0.4
3,780,785	+				-2.0
3,780,797	+				+1.8
3,780,797	+				-1.7
3,780,797	-				+0.3
3,780,807	+				+0.4
3,780,813	+				+1.0
3,780,813	+				-1.2
3,780,818	+				+0.2
3,780,818	+				-0.7
3,780,821	-				+0.3
3,780,821	-				-0.8
3,780,828	+				+0.3
3,780,828	+				-0.8
3,780,828	+				+0.2
3,780,828	+				-0.8
3,780,828	+				+0.2
3,780,828	+				-0.5
3,780,836	-		GFF3738	0.10	-0.2
3,780,848	+		GFF3738	0.12	+0.4
3,780,851	-		GFF3738	0.12	-1.2
3,780,856	-		GFF3738	0.13	+1.0
3,780,874	+		GFF3738	0.15	+0.0
3,780,874	+		GFF3738	0.15	+1.0
3,780,874	+		GFF3738	0.15	-1.3
3,780,874	+		GFF3738	0.15	-0.4
3,780,874	+		GFF3738	0.15	-1.7
3,780,874	+		GFF3738	0.15	+0.4
3,780,879	+		GFF3738	0.15	+0.4
3,780,879	+		GFF3738	0.15	+1.4
3,780,882	-		GFF3738	0.16	-2.0
3,780,882	-		GFF3738	0.16	-1.8
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3,780,882	-		GFF3738	0.16	+0.6
3,780,882	-		GFF3738	0.16	+1.2
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3,780,882	-		GFF3738	0.16	-0.8
3,780,882	-		GFF3738	0.16	+0.2
3,780,905	-		GFF3738	0.19	-0.4
3,780,905	-		GFF3738	0.19	-1.5
3,780,931	+		GFF3738	0.22	-0.0
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3,780,938	+		GFF3738	0.23	-0.6
3,780,946	+		GFF3738	0.24	-0.6
3,780,946	-		GFF3738	0.24	+0.5
3,780,947	+		GFF3738	0.24	+0.1
3,780,956	-		GFF3738	0.25	+0.1
3,780,957	+		GFF3738	0.25	+0.5
3,780,964	+		GFF3738	0.26	+0.8
3,780,981	-		GFF3738	0.28	-0.3
3,781,003	-		GFF3738	0.31	-0.7
3,781,037	+		GFF3738	0.35	-1.2
3,781,039	-		GFF3738	0.36	-0.2
3,781,043	+		GFF3738	0.36	-0.0
3,781,058	+		GFF3738	0.38	-0.0
3,781,072	-		GFF3738	0.40	+1.5
3,781,072	-		GFF3738	0.40	-0.6
3,781,074	+		GFF3738	0.40	-1.0
3,781,079	+		GFF3738	0.41	-1.0
3,781,079	+		GFF3738	0.41	-3.1
3,781,079	+		GFF3738	0.41	-0.9
3,781,079	+		GFF3738	0.41	+0.1
3,781,079	+		GFF3738	0.41	+1.9
3,781,082	-		GFF3738	0.41	-0.1
3,781,082	-		GFF3738	0.41	-0.5
3,781,084	+		GFF3738	0.41	-0.3