Strain Fitness in Sphingobium sp. HT1-2 around GFF3713

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,756,324	+		GFF3711	0.64	-2.0
3,756,325	+		GFF3711	0.64	-1.5
3,756,325	+		GFF3711	0.64	+1.2
3,756,325	+		GFF3711	0.64	-1.2
3,756,325	-		GFF3711	0.64	-0.3
3,756,332	-		GFF3711	0.65	+0.4
3,756,332	-		GFF3711	0.65	-1.0
3,756,351	+		GFF3711	0.67	-2.7
3,756,351	-		GFF3711	0.67	+0.2
3,756,351	-		GFF3711	0.67	-0.1
3,756,351	-		GFF3711	0.67	-1.1
3,756,359	+		GFF3711	0.68	+0.1
3,756,361	+		GFF3711	0.68	+0.4
3,756,369	-		GFF3711	0.69	-1.2
3,756,369	-		GFF3711	0.69	+0.7
3,756,375	-		GFF3711	0.70	+0.0
3,756,388	+		GFF3711	0.71	-1.2
3,756,406	+		GFF3711	0.73	+0.9
3,756,407	+		GFF3711	0.74	+0.0
3,756,413	+		GFF3711	0.74	-0.8
3,756,414	-		GFF3711	0.74	+0.0
3,756,421	-		GFF3711	0.75	+0.2
3,756,423	+		GFF3711	0.75	-0.3
3,756,423	+		GFF3711	0.75	-3.1
3,756,423	+		GFF3711	0.75	+0.8
3,756,425	-		GFF3711	0.76	+0.3
3,756,431	-		GFF3711	0.76	-0.3
3,756,432	+		GFF3711	0.76	+0.6
3,756,432	+		GFF3711	0.76	-0.4
3,756,437	+		GFF3711	0.77	-0.6
3,756,437	+		GFF3711	0.77	+0.6
3,756,437	+		GFF3711	0.77	-0.1
3,756,437	+		GFF3711	0.77	+0.2
3,756,437	+		GFF3711	0.77	+1.2
3,756,440	-		GFF3711	0.77	+0.4
3,756,443	-		GFF3711	0.78	+0.3
3,756,450	-		GFF3711	0.79	-0.6
3,756,450	-		GFF3711	0.79	-2.2
3,756,452	+		GFF3711	0.79	+0.1
3,756,460	-		GFF3711	0.80	+0.8
3,756,474	+		GFF3711	0.81	-0.6
3,756,474	+		GFF3711	0.81	-2.0
3,756,481	+		GFF3711	0.82	-0.8
3,756,482	+		GFF3711	0.82	+0.3
3,756,482	+		GFF3711	0.82	-0.9
3,756,482	-		GFF3711	0.82	-0.4
3,756,495	-		GFF3711	0.84	+0.8
3,756,500	+		GFF3711	0.85	+0.6
3,756,500	-		GFF3711	0.85	+0.8
3,756,521	+		GFF3711	0.87	+0.2
3,756,521	+		GFF3711	0.87	-0.1
3,756,529	-		GFF3711	0.88	+1.6
3,756,531	+		GFF3711	0.88	-0.4
3,756,531	+		GFF3711	0.88	-0.1
3,756,531	+		GFF3711	0.88	+0.5
3,756,573	-				-1.3
3,756,573	-				-0.1
3,756,573	-				-0.4
3,756,583	-				-0.1
3,756,589	-				+1.0
3,756,601	-				-0.6
3,756,612	+				-0.4
3,756,618	+				-1.0
3,756,626	-				-2.6
3,756,631	+				-1.2
3,756,632	+				-0.2
3,756,633	-				+0.5
3,756,640	-				+0.5
3,756,640	-				+0.4
3,756,657	+				+0.6
3,756,658	+				-0.5
3,756,663	+				+0.9
3,756,671	-				+0.9
3,756,671	-				-0.5
3,756,691	+				+1.2
3,756,698	+				+0.2
3,756,699	-				+0.8
3,756,704	-				-0.1
3,756,709	-				+0.6
3,756,718	+				-0.3
3,756,718	+				+0.6
3,756,718	+				+0.4
3,756,726	+				+0.6
3,756,726	-				+0.3
3,756,726	-				-2.3
3,756,726	-				-1.8
3,756,726	-				-1.4
3,756,726	-				+1.6
3,756,734	+		GFF3712	0.10	+1.3
3,756,770	+		GFF3712	0.16	-1.2
3,756,770	+		GFF3712	0.16	-0.0
3,756,778	-		GFF3712	0.17	-0.7
3,756,781	+		GFF3712	0.18	-0.2
3,756,786	+		GFF3712	0.18	-0.5
3,756,789	-		GFF3712	0.19	+1.5
3,756,795	+		GFF3712	0.20	+1.7
3,756,795	+		GFF3712	0.20	-0.6
3,756,801	+		GFF3712	0.21	-1.6
3,756,801	+		GFF3712	0.21	+1.0
3,756,801	+		GFF3712	0.21	+0.1
3,756,803	-		GFF3712	0.21	+0.9
3,756,809	-		GFF3712	0.22	-0.6
3,756,809	-		GFF3712	0.22	+0.0
3,756,831	+		GFF3712	0.25	-0.7
3,756,853	+		GFF3712	0.28	-1.5
3,756,855	+		GFF3712	0.29	+0.1
3,756,855	+		GFF3712	0.29	+0.1
3,756,863	-		GFF3712	0.30	-0.4
3,756,911	-		GFF3712	0.37	-0.8
3,756,912	+		GFF3712	0.37	+0.2
3,756,913	-		GFF3712	0.38	+0.2
3,756,924	+		GFF3712	0.39	-0.4
3,756,924	+		GFF3712	0.39	-1.6
3,756,934	+		GFF3712	0.41	+0.8
3,756,934	+		GFF3712	0.41	-0.3
3,756,934	+		GFF3712	0.41	-2.4
3,756,934	+		GFF3712	0.41	+0.6
3,756,934	+		GFF3712	0.41	-1.2
3,756,942	-		GFF3712	0.42	-0.8
3,756,967	+		GFF3712	0.46	-0.8
3,756,967	+		GFF3712	0.46	-2.4
3,756,975	-		GFF3712	0.47	+1.4
3,756,975	-		GFF3712	0.47	+0.8
3,756,975	-		GFF3712	0.47	-1.1
3,756,975	-		GFF3712	0.47	-0.2
3,756,976	+		GFF3712	0.47	-0.5
3,756,981	+		GFF3712	0.48	+0.4
3,757,006	+		GFF3712	0.52	+0.2
3,757,011	+		GFF3712	0.52	-0.9
3,757,011	+		GFF3712	0.52	-2.0
3,757,016	+		GFF3712	0.53	-1.8
3,757,017	+		GFF3712	0.53	+0.9
3,757,019	-		GFF3712	0.54	+0.6
3,757,024	-		GFF3712	0.54	-0.6
3,757,036	+		GFF3712	0.56	+0.8
3,757,068	+		GFF3712	0.61	+0.4
3,757,078	+		GFF3712	0.63	-0.9
3,757,078	+		GFF3712	0.63	-0.9
3,757,078	+		GFF3712	0.63	-0.4
3,757,080	+		GFF3712	0.63	+0.4
3,757,081	-		GFF3712	0.63	-0.0
3,757,086	-		GFF3712	0.64	+0.0
3,757,086	-		GFF3712	0.64	-0.8
3,757,086	-		GFF3712	0.64	-1.4
3,757,086	-		GFF3712	0.64	+0.7
3,757,086	-		GFF3712	0.64	-0.4
3,757,086	-		GFF3712	0.64	+0.2
3,757,086	-		GFF3712	0.64	-0.8
3,757,127	+		GFF3712	0.70	-1.5
3,757,132	+		GFF3712	0.71	-0.2
3,757,140	+		GFF3712	0.72	+0.0
3,757,142	-		GFF3712	0.72	-0.2
3,757,148	+		GFF3712	0.73	+0.9
3,757,156	-		GFF3712	0.74	-1.7
3,757,174	-		GFF3712	0.77	+0.4
3,757,177	+		GFF3712	0.78	+0.6
3,757,185	-		GFF3712	0.79	+1.4
3,757,186	+		GFF3712	0.79	+0.4
3,757,202	-		GFF3712	0.81	-0.8
3,757,224	-		GFF3712	0.85	-0.7
3,757,229	+		GFF3712	0.85	+0.3
3,757,242	-		GFF3712	0.87	-2.8
3,757,250	+		GFF3712	0.89	-0.6
3,757,258	-		GFF3712	0.90	-1.1
3,757,281	+				+0.7
3,757,288	+				-0.2
3,757,289	-				+0.1
3,757,296	-				+0.9
3,757,298	+				+0.6
3,757,306	+				-0.2
3,757,314	-				-1.3
3,757,325	+				+0.9
3,757,332	+				+1.7
3,757,332	+				+0.7
3,757,332	+				-0.4
3,757,340	-				+0.1
3,757,340	-				-0.4
3,757,347	-				+0.6
3,757,347	-				-0.8
3,757,366	+		GFF3713	0.11	-0.3
3,757,372	-		GFF3713	0.12	-0.5
3,757,372	-		GFF3713	0.12	+0.2
3,757,372	-		GFF3713	0.12	-0.9
3,757,374	-		GFF3713	0.13	-1.2
3,757,374	-		GFF3713	0.13	-0.2
3,757,374	-		GFF3713	0.13	+0.3
3,757,374	-		GFF3713	0.13	+0.1
3,757,403	+		GFF3713	0.20	+0.4
3,757,403	+		GFF3713	0.20	-1.0
3,757,411	-		GFF3713	0.22	-2.0
3,757,411	-		GFF3713	0.22	+0.7
3,757,432	+		GFF3713	0.27	+0.8
3,757,432	+		GFF3713	0.27	+0.4
3,757,440	-		GFF3713	0.29	-0.2
3,757,490	-		GFF3713	0.41	+1.3
3,757,509	-		GFF3713	0.46	+0.3
3,757,509	-		GFF3713	0.46	-0.1
3,757,514	-		GFF3713	0.47	+0.7
3,757,514	-		GFF3713	0.47	-1.8
3,757,519	+		GFF3713	0.48	-0.5
3,757,520	-		GFF3713	0.48	-0.9
3,757,534	-		GFF3713	0.52	+0.2
3,757,543	-		GFF3713	0.54	-0.1
3,757,551	+		GFF3713	0.56	-1.2
3,757,559	-		GFF3713	0.58	-1.3
3,757,559	-		GFF3713	0.58	+0.8
3,757,559	-		GFF3713	0.58	-0.5
3,757,559	-		GFF3713	0.58	-0.0
3,757,559	-		GFF3713	0.58	+0.7
3,757,561	+		GFF3713	0.58	+1.0
3,757,561	+		GFF3713	0.58	+0.8
3,757,561	+		GFF3713	0.58	-1.3
3,757,561	+		GFF3713	0.58	-0.8
3,757,561	+		GFF3713	0.58	+0.7
3,757,561	+		GFF3713	0.58	+0.4
3,757,569	-		GFF3713	0.60	-0.2
3,757,569	-		GFF3713	0.60	-0.2
3,757,569	-		GFF3713	0.60	+0.4
3,757,605	-		GFF3713	0.69	-1.7
3,757,608	-		GFF3713	0.70	-0.7
3,757,613	+		GFF3713	0.71	+0.3
3,757,615	+		GFF3713	0.72	+0.2
3,757,623	-		GFF3713	0.73	+0.1
3,757,623	-		GFF3713	0.73	+0.5
3,757,623	-		GFF3713	0.73	+1.2
3,757,647	+		GFF3713	0.79	-0.8
3,757,657	+		GFF3713	0.82	+1.0
3,757,664	+		GFF3713	0.83	-0.4
3,757,666	+		GFF3713	0.84	+0.7
3,757,699	+				-0.5
3,757,707	+				-0.1
3,757,707	+				+0.6
3,757,707	+				+0.0
3,757,707	-				+0.2
3,757,715	-				-0.9
3,757,716	+				+0.3
3,757,716	+				-1.0
3,757,716	+				+0.5
3,757,716	+				-2.4
3,757,724	-				-0.9
3,757,724	-				+0.2
3,757,724	-				-1.4
3,757,724	-				-1.2
3,757,724	-				-0.2
3,757,731	+				+0.2
3,757,732	-				-0.5
3,757,733	+				-0.2
3,757,738	+				+0.6
3,757,739	-				+2.5
3,757,741	+				-0.4
3,757,754	+				-1.0
3,757,762	+				-0.5
3,757,763	-				-0.6
3,757,785	+		GFF3714	0.14	+0.7
3,757,785	+		GFF3714	0.14	+1.3
3,757,785	+		GFF3714	0.14	+0.8
3,757,785	+		GFF3714	0.14	+0.9
3,757,785	+		GFF3714	0.14	+0.3
3,757,788	-		GFF3714	0.15	-1.2
3,757,790	+		GFF3714	0.15	-2.4
3,757,793	-		GFF3714	0.16	+1.0
3,757,793	-		GFF3714	0.16	-0.6
3,757,793	-		GFF3714	0.16	+0.2
3,757,832	+		GFF3714	0.27	+0.5
3,757,832	+		GFF3714	0.27	+0.4
3,757,832	+		GFF3714	0.27	+1.0
3,757,840	-		GFF3714	0.29	+1.0
3,757,840	-		GFF3714	0.29	+1.2
3,757,844	+		GFF3714	0.30	-0.6
3,757,844	+		GFF3714	0.30	+0.6
3,757,844	+		GFF3714	0.30	-0.1
3,757,844	+		GFF3714	0.30	-0.7
3,757,844	+		GFF3714	0.30	+0.3
3,757,852	+		GFF3714	0.32	+1.5
3,757,852	+		GFF3714	0.32	-1.2
3,757,852	-		GFF3714	0.32	-0.7
3,757,852	-		GFF3714	0.32	+0.2
3,757,852	-		GFF3714	0.32	+0.5
3,757,852	-		GFF3714	0.32	+0.3
3,757,854	+		GFF3714	0.33	-1.6
3,757,854	+		GFF3714	0.33	+0.8
3,757,859	+		GFF3714	0.34	+1.6
3,757,859	+		GFF3714	0.34	-0.2
3,757,860	-		GFF3714	0.34	+0.7
3,757,867	-		GFF3714	0.36	+1.2
3,757,867	-		GFF3714	0.36	-0.7
3,757,869	+		GFF3714	0.37	-0.2
3,757,872	-		GFF3714	0.37	-0.6
3,757,872	-		GFF3714	0.37	-0.9
3,757,885	+		GFF3714	0.41	-1.9
3,757,888	-		GFF3714	0.42	-0.6
3,757,909	+		GFF3714	0.47	+0.3
3,757,921	-		GFF3714	0.51	-0.3
3,757,937	+		GFF3714	0.55	-0.7
3,757,938	+		GFF3714	0.55	+0.2
3,757,946	-		GFF3714	0.57	+0.2
3,757,946	-		GFF3714	0.57	+0.9
3,757,998	-		GFF3714	0.72	+0.3
3,758,000	+		GFF3714	0.72	-0.2
3,758,002	+		GFF3714	0.73	-1.2
3,758,010	-		GFF3714	0.75	-1.3
3,758,010	-		GFF3714	0.75	-0.4
3,758,010	-		GFF3714	0.75	-0.7
3,758,027	-		GFF3714	0.79	-0.1
3,758,033	+		GFF3714	0.81	+0.4
3,758,035	+		GFF3714	0.82	+0.4
3,758,110	-				+0.4
3,758,125	-				-1.4
3,758,131	+				+0.6
3,758,139	+				-0.1
3,758,139	+				-0.6
3,758,139	+				+0.4
3,758,147	-				-0.1
3,758,147	-				-0.8
3,758,173	-				+0.7
3,758,214	+				-2.2
3,758,238	+				-0.2
3,758,363	-				-2.0
3,758,379	+				-0.2
3,758,379	+				-0.0
3,758,387	-				-0.7
3,758,401	-				+0.0
3,758,401	-				-0.6
3,758,401	-				+0.8
3,758,404	+				-0.4
3,758,409	+				-1.0
3,758,411	+				+0.8
3,758,412	-				+0.2
3,758,412	-				+1.0
3,758,412	-				+0.8
3,758,412	-				+0.6
3,758,417	-				-0.8
3,758,422	-				+0.2
3,758,422	-				+0.1
3,758,452	-		GFF3715	0.14	+1.2
3,758,463	+		GFF3715	0.15	+0.7
3,758,468	+		GFF3715	0.16	+1.8
3,758,468	+		GFF3715	0.16	+1.0
3,758,473	-		GFF3715	0.17	-1.5
3,758,476	-		GFF3715	0.17	+0.1
3,758,480	+		GFF3715	0.18	+0.1
3,758,481	-		GFF3715	0.18	-1.0
3,758,497	+		GFF3715	0.20	+0.4
3,758,505	-		GFF3715	0.22	+1.0
3,758,515	+		GFF3715	0.23	+0.0
3,758,535	+		GFF3715	0.26	+1.8
3,758,535	+		GFF3715	0.26	-0.1
3,758,538	-		GFF3715	0.26	+0.4
3,758,540	+		GFF3715	0.27	+0.7
3,758,540	+		GFF3715	0.27	-0.4
3,758,540	+		GFF3715	0.27	-0.5
3,758,540	+		GFF3715	0.27	+1.1
3,758,540	+		GFF3715	0.27	-2.0
3,758,540	+		GFF3715	0.27	-0.1
3,758,540	+		GFF3715	0.27	+0.2
3,758,540	+		GFF3715	0.27	+1.0
3,758,541	-		GFF3715	0.27	-0.3
3,758,543	-		GFF3715	0.27	-0.6
3,758,543	-		GFF3715	0.27	-0.6
3,758,543	-		GFF3715	0.27	-0.8
3,758,548	-		GFF3715	0.28	+0.1
3,758,548	-		GFF3715	0.28	-1.2
3,758,548	-		GFF3715	0.28	+0.3
3,758,548	-		GFF3715	0.28	+0.4
3,758,559	+		GFF3715	0.30	-0.1
3,758,562	-		GFF3715	0.30	-0.4
3,758,576	+		GFF3715	0.32	-0.3
3,758,576	+		GFF3715	0.32	-0.2
3,758,584	-		GFF3715	0.33	+0.3
3,758,584	-		GFF3715	0.33	-2.7
3,758,584	-		GFF3715	0.33	+0.3
3,758,584	-		GFF3715	0.33	-0.7
3,758,584	-		GFF3715	0.33	+0.4
3,758,628	-		GFF3715	0.40	-0.8
3,758,660	+		GFF3715	0.45	+0.7
3,758,682	+		GFF3715	0.48	-1.6
3,758,689	-		GFF3715	0.49	-0.2
3,758,703	+		GFF3715	0.51	-1.3
3,758,722	+		GFF3715	0.54	-0.9
3,758,722	+		GFF3715	0.54	-0.4
3,758,724	+		GFF3715	0.54	+0.4
3,758,730	-		GFF3715	0.55	+0.1