Strain Fitness in Sphingobium sp. HT1-2 around GFF3696

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,739,118	+		GFF3694	0.47	+0.3
3,739,119	-		GFF3694	0.47	-1.5
3,739,137	+		GFF3694	0.49	+1.3
3,739,155	+		GFF3694	0.51	+0.3
3,739,155	+		GFF3694	0.51	-1.0
3,739,163	-		GFF3694	0.52	-1.7
3,739,163	-		GFF3694	0.52	-0.7
3,739,163	-		GFF3694	0.52	+0.3
3,739,170	-		GFF3694	0.52	-0.3
3,739,178	-		GFF3694	0.53	-1.2
3,739,183	-		GFF3694	0.54	+0.4
3,739,186	+		GFF3694	0.54	-0.7
3,739,190	-		GFF3694	0.54	-0.4
3,739,219	+		GFF3694	0.57	-1.4
3,739,227	-		GFF3694	0.58	+0.7
3,739,259	+		GFF3694	0.61	-2.0
3,739,267	-		GFF3694	0.62	+0.5
3,739,267	-		GFF3694	0.62	+0.3
3,739,279	+		GFF3694	0.63	-0.9
3,739,281	+		GFF3694	0.63	-0.3
3,739,289	-		GFF3694	0.64	-1.5
3,739,289	-		GFF3694	0.64	+0.1
3,739,289	-		GFF3694	0.64	-1.5
3,739,292	+		GFF3694	0.65	-0.4
3,739,300	-		GFF3694	0.65	+0.9
3,739,300	-		GFF3694	0.65	+0.8
3,739,304	+		GFF3694	0.66	-0.3
3,739,307	+		GFF3694	0.66	-1.2
3,739,317	+		GFF3694	0.67	-0.5
3,739,318	+		GFF3694	0.67	+0.9
3,739,318	+		GFF3694	0.67	-0.1
3,739,326	-		GFF3694	0.68	+0.7
3,739,326	-		GFF3694	0.68	+0.2
3,739,326	-		GFF3694	0.68	+0.1
3,739,326	-		GFF3694	0.68	-2.4
3,739,326	-		GFF3694	0.68	+0.5
3,739,336	+		GFF3694	0.69	-1.1
3,739,336	+		GFF3694	0.69	+0.3
3,739,338	+		GFF3694	0.69	-0.2
3,739,346	-		GFF3694	0.70	+0.6
3,739,346	-		GFF3694	0.70	+0.6
3,739,346	-		GFF3694	0.70	+0.1
3,739,374	-		GFF3694	0.73	+0.3
3,739,383	+		GFF3694	0.74	-0.7
3,739,391	-		GFF3694	0.74	+0.7
3,739,391	-		GFF3694	0.74	+0.9
3,739,391	-		GFF3694	0.74	-2.5
3,739,391	-		GFF3694	0.74	-1.3
3,739,393	+		GFF3694	0.75	+0.1
3,739,393	+		GFF3694	0.75	-0.3
3,739,401	-		GFF3694	0.76	+0.9
3,739,408	-		GFF3694	0.76	-1.6
3,739,421	-		GFF3694	0.78	+0.1
3,739,429	+		GFF3694	0.78	-0.9
3,739,437	-		GFF3694	0.79	+0.1
3,739,447	-		GFF3694	0.80	-0.2
3,739,447	-		GFF3694	0.80	-1.8
3,739,506	+		GFF3694	0.86	+2.0
3,739,508	-		GFF3694	0.86	+0.3
3,739,509	-		GFF3694	0.86	+0.1
3,739,509	-		GFF3694	0.86	+0.4
3,739,532	+		GFF3694	0.89	-0.5
3,739,540	-		GFF3694	0.89	+0.9
3,739,540	-		GFF3694	0.89	-1.2
3,739,559	-				-2.1
3,739,559	-				+1.3
3,739,583	+				+0.9
3,739,585	+				-2.7
3,739,585	+				-2.0
3,739,593	-				+0.1
3,739,647	-				+0.3
3,739,678	+				-0.1
3,739,678	+				+1.4
3,739,678	+				+0.8
3,739,683	+				+1.8
3,739,692	-				+0.2
3,739,702	+				-0.1
3,739,710	-				+0.8
3,739,712	-				-0.4
3,739,712	-				+1.8
3,739,712	-				-0.2
3,739,715	+				-0.7
3,739,715	+				-0.4
3,739,715	+				-1.7
3,739,715	+				-0.0
3,739,715	+				-0.5
3,739,721	+				-0.3
3,739,721	+				+0.3
3,739,722	+				+0.5
3,739,722	+				+0.6
3,739,722	+				+0.4
3,739,722	-				+0.8
3,739,722	-				+1.4
3,739,722	-				+0.1
3,739,723	-				+0.4
3,739,729	-				-0.7
3,739,729	-				+0.9
3,739,786	+		GFF3695	0.28	+0.1
3,739,877	+		GFF3695	0.73	-0.3
3,740,120	-				+0.5
3,740,138	+				+0.2
3,740,143	+				-0.3
3,740,143	+				+0.7
3,740,143	+				-1.1
3,740,143	+				+0.3
3,740,143	+				+1.6
3,740,143	+				-3.1
3,740,143	+				-0.9
3,740,143	+				-0.2
3,740,143	+				-1.0
3,740,151	-				+0.6
3,740,151	-				-0.9
3,740,151	-				+0.7
3,740,151	-				+0.9
3,740,151	-				-0.5
3,740,151	-				-0.0
3,740,151	-				-0.6
3,740,151	-				+0.2
3,740,186	-				-0.2
3,740,190	-				+0.2
3,740,192	-				-0.4
3,740,192	-				-0.4
3,740,201	-		GFF3696	0.11	-0.4
3,740,229	+		GFF3696	0.14	-2.0
3,740,250	+		GFF3696	0.16	-0.9
3,740,275	+		GFF3696	0.18	-1.2
3,740,279	+		GFF3696	0.19	-0.0
3,740,281	+		GFF3696	0.19	-1.4
3,740,296	+		GFF3696	0.20	-0.3
3,740,297	-		GFF3696	0.20	-0.4
3,740,299	-		GFF3696	0.21	-0.9
3,740,335	+		GFF3696	0.24	+0.7
3,740,343	-		GFF3696	0.25	+0.9
3,740,343	-		GFF3696	0.25	-1.6
3,740,354	+		GFF3696	0.26	-0.3
3,740,354	+		GFF3696	0.26	-0.8
3,740,362	-		GFF3696	0.27	-1.8
3,740,396	+		GFF3696	0.30	-3.0
3,740,401	+		GFF3696	0.31	-0.7
3,740,409	-		GFF3696	0.32	+0.0
3,740,411	+		GFF3696	0.32	-2.0
3,740,416	+		GFF3696	0.32	-0.4
3,740,426	+		GFF3696	0.33	-2.6
3,740,426	+		GFF3696	0.33	-0.6
3,740,426	+		GFF3696	0.33	+0.3
3,740,426	+		GFF3696	0.33	-0.3
3,740,426	+		GFF3696	0.33	+0.6
3,740,434	-		GFF3696	0.34	-0.4
3,740,434	-		GFF3696	0.34	-0.1
3,740,441	+		GFF3696	0.35	+1.1
3,740,442	+		GFF3696	0.35	-0.1
3,740,444	-		GFF3696	0.35	-0.9
3,740,449	-		GFF3696	0.36	+0.2
3,740,449	-		GFF3696	0.36	-0.6
3,740,450	-		GFF3696	0.36	-1.1
3,740,453	+		GFF3696	0.36	-0.7
3,740,461	-		GFF3696	0.37	+1.3
3,740,464	+		GFF3696	0.37	-1.4
3,740,465	+		GFF3696	0.37	+0.6
3,740,466	+		GFF3696	0.37	+0.5
3,740,476	+		GFF3696	0.38	+0.4
3,740,476	+		GFF3696	0.38	-1.6
3,740,476	+		GFF3696	0.38	+0.1
3,740,476	+		GFF3696	0.38	-0.4
3,740,484	-		GFF3696	0.39	-1.4
3,740,494	+		GFF3696	0.40	-2.2
3,740,500	-		GFF3696	0.41	-2.5
3,740,502	-		GFF3696	0.41	+0.1
3,740,519	+		GFF3696	0.42	+0.4
3,740,519	+		GFF3696	0.42	-0.7
3,740,519	+		GFF3696	0.42	+0.4
3,740,550	-		GFF3696	0.46	-0.4
3,740,607	+		GFF3696	0.51	+0.1
3,740,609	+		GFF3696	0.51	-0.5
3,740,609	+		GFF3696	0.51	-0.9
3,740,609	+		GFF3696	0.51	+0.9
3,740,609	-		GFF3696	0.51	+0.1
3,740,614	+		GFF3696	0.52	-0.3
3,740,614	+		GFF3696	0.52	-0.6
3,740,615	-		GFF3696	0.52	-1.3
3,740,615	-		GFF3696	0.52	-2.0
3,740,619	+		GFF3696	0.52	-0.0
3,740,622	-		GFF3696	0.53	-0.8
3,740,622	-		GFF3696	0.53	+0.3
3,740,627	-		GFF3696	0.53	+0.0
3,740,646	+		GFF3696	0.55	+0.4
3,740,646	+		GFF3696	0.55	+1.0
3,740,654	+		GFF3696	0.56	+0.0
3,740,667	+		GFF3696	0.57	+0.5
3,740,667	-		GFF3696	0.57	-1.6
3,740,672	+		GFF3696	0.58	+1.2
3,740,680	-		GFF3696	0.59	+1.3
3,740,680	-		GFF3696	0.59	-0.1
3,740,712	+		GFF3696	0.62	-0.8
3,740,742	+		GFF3696	0.65	-2.0
3,740,742	+		GFF3696	0.65	+0.9
3,740,742	+		GFF3696	0.65	-2.4
3,740,747	+		GFF3696	0.65	-0.2
3,740,750	-		GFF3696	0.65	-0.2
3,740,750	-		GFF3696	0.65	-0.3
3,740,750	-		GFF3696	0.65	+0.3
3,740,750	-		GFF3696	0.65	-0.4
3,740,752	+		GFF3696	0.66	+1.8
3,740,755	-		GFF3696	0.66	+0.5
3,740,756	-		GFF3696	0.66	-1.6
3,740,767	+		GFF3696	0.67	+0.9
3,740,773	+		GFF3696	0.68	+0.4
3,740,783	+		GFF3696	0.69	-1.4
3,740,786	-		GFF3696	0.69	-0.2
3,740,786	-		GFF3696	0.69	+0.6
3,740,786	-		GFF3696	0.69	-0.1
3,740,800	+		GFF3696	0.70	+0.5
3,740,800	+		GFF3696	0.70	-0.1
3,740,808	-		GFF3696	0.71	-0.2
3,740,833	+		GFF3696	0.74	-0.9
3,740,839	-		GFF3696	0.74	-1.3
3,740,842	-		GFF3696	0.75	+0.3
3,740,851	-		GFF3696	0.76	+0.6
3,740,862	-		GFF3696	0.77	-1.6
3,740,875	+		GFF3696	0.78	+0.2
3,740,875	+		GFF3696	0.78	-0.5
3,740,875	+		GFF3696	0.78	-1.4
3,740,883	-		GFF3696	0.79	-0.3
3,740,883	-		GFF3696	0.79	+0.9
3,740,883	-		GFF3696	0.79	-1.4
3,740,883	-		GFF3696	0.79	+0.0
3,740,897	+		GFF3696	0.80	-0.7
3,740,897	+		GFF3696	0.80	-0.1
3,740,897	+		GFF3696	0.80	+0.6
3,740,905	-		GFF3696	0.81	+1.4
3,740,905	-		GFF3696	0.81	+0.8
3,740,905	-		GFF3696	0.81	-0.0
3,740,905	-		GFF3696	0.81	-0.1
3,740,905	-		GFF3696	0.81	-1.3
3,740,915	+		GFF3696	0.82	-0.7
3,740,915	-		GFF3696	0.82	+1.0
3,740,942	+		GFF3696	0.85	+0.2
3,740,958	+		GFF3696	0.86	-0.2
3,740,958	+		GFF3696	0.86	+0.5
3,740,958	+		GFF3696	0.86	+0.6
3,740,958	+		GFF3696	0.86	-0.2
3,740,963	+		GFF3696	0.87	+0.9
3,740,966	-		GFF3696	0.87	+0.5
3,740,966	-		GFF3696	0.87	-0.9
3,740,966	-		GFF3696	0.87	-0.3
3,740,998	+				-0.8
3,740,998	+				-1.2
3,740,999	-				+0.7
3,741,003	+				-0.8
3,741,003	+				+0.1
3,741,006	-				+0.4
3,741,006	-				-1.4
3,741,006	-				-0.8
3,741,006	-				-1.0
3,741,006	-				-0.2
3,741,008	+				-0.2
3,741,008	+				-0.7
3,741,016	-				-2.0
3,741,016	-				-0.4
3,741,023	+				-0.5
3,741,027	+				-1.3
3,741,027	+				+0.6
3,741,037	+				+0.3
3,741,045	-				-0.2
3,741,065	+				-0.9
3,741,065	+				-0.2
3,741,065	+				+0.3
3,741,065	+				-0.4
3,741,065	+				-1.0
3,741,073	-				-0.8
3,741,073	-				-1.0
3,741,073	-				-0.6
3,741,073	-				-0.0
3,741,089	+				-0.1
3,741,092	+				-0.8
3,741,093	-				-0.6
3,741,095	+				-0.1
3,741,097	-				+0.6
3,741,102	+				+0.6
3,741,102	+				-0.4
3,741,102	+				-0.5
3,741,102	+				-0.8
3,741,102	+				-1.9
3,741,102	+				-0.9
3,741,110	-				+0.0
3,741,110	-				-0.4
3,741,110	-				-0.2
3,741,110	-				-0.7
3,741,110	-				+1.4
3,741,110	-				+0.4
3,741,110	-				+0.6
3,741,110	-				+0.2
3,741,110	-				-0.5
3,741,110	-				-0.1
3,741,110	-				+0.6
3,741,110	-				+1.2
3,741,116	+				+1.0
3,741,143	-				-0.9
3,741,163	-				+1.3
3,741,167	-				-1.6
3,741,169	-				+0.1
3,741,188	+				-0.7
3,741,188	-				-1.6
3,741,193	+				-1.6
3,741,193	+				-0.2
3,741,193	+				+0.0
3,741,198	+				-1.3
3,741,198	+				-1.0
3,741,198	+				+0.9
3,741,200	+				+0.7
3,741,200	+				-0.9
3,741,201	-				-1.1
3,741,205	+				-1.5
3,741,206	-				+0.1
3,741,208	-				+0.1
3,741,234	+				+0.2
3,741,285	+				+1.5
3,741,293	-				+0.8
3,741,307	+				-0.4
3,741,307	+				+0.2
3,741,307	-				-0.7
3,741,307	-				+0.7
3,741,307	-				+1.2
3,741,312	+				-3.0
3,741,317	+				+0.1
3,741,338	-				-1.6
3,741,345	+				-1.1
3,741,345	+				-1.2
3,741,345	+				-0.4
3,741,345	+				-0.5
3,741,353	-				-3.2
3,741,353	-				-1.9
3,741,361	+				-2.4
3,741,362	+				-0.4
3,741,370	-				-0.6
3,741,370	-				-0.7
3,741,372	+				-1.8
3,741,372	+				-1.6
3,741,372	+				-1.0
3,741,372	+				-0.6
3,741,394	-				-2.5
3,741,406	+				-1.6
3,741,414	+				-1.8
3,741,414	+				-3.6
3,741,422	-				-3.1
3,741,422	-				-0.4
3,741,422	-				-1.4
3,741,435	+				-1.3
3,741,435	+				-0.9
3,741,435	+				-1.9
3,741,435	+				-2.3
3,741,435	+				-2.9
3,741,443	-				-2.7
3,741,443	-				-1.6
3,741,465	+				-2.6
3,741,468	-				-3.4
3,741,469	+				-1.3
3,741,469	+				-1.3
3,741,477	-				-2.1
3,741,479	+				-1.4
3,741,486	+				-2.5
3,741,486	+				-1.9
3,741,494	-				-3.2
3,741,494	-				+0.2
3,741,505	+				-2.6
3,741,515	+		GFF3697	0.10	-3.6
3,741,515	+		GFF3697	0.10	-2.3
3,741,515	+		GFF3697	0.10	-1.8
3,741,523	-		GFF3697	0.11	-2.2
3,741,545	+		GFF3697	0.13	-1.8
3,741,549	+		GFF3697	0.13	-2.7
3,741,549	+		GFF3697	0.13	-2.0
3,741,570	+		GFF3697	0.15	-0.4
3,741,591	-		GFF3697	0.16	-1.6
3,741,611	+		GFF3697	0.18	-2.6
3,741,611	+		GFF3697	0.18	-3.1
3,741,611	+		GFF3697	0.18	-1.9
3,741,611	+		GFF3697	0.18	-1.8
3,741,619	-		GFF3697	0.19	-2.0
3,741,619	-		GFF3697	0.19	-0.8
3,741,619	-		GFF3697	0.19	-3.1
3,741,620	-		GFF3697	0.19	-3.0
3,741,620	-		GFF3697	0.19	-1.4
3,741,637	+		GFF3697	0.20	-0.6
3,741,645	-		GFF3697	0.21	-1.9
3,741,647	+		GFF3697	0.21	-2.9
3,741,654	+		GFF3697	0.22	-2.2
3,741,654	+		GFF3697	0.22	-2.6
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