Strain Fitness in Sphingobium sp. HT1-2 around GFF3683

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,724,953	+		GFF3680	0.67	-0.7
3,724,953	-		GFF3680	0.67	+0.8
3,724,959	-		GFF3680	0.67	-0.8
3,724,959	-		GFF3680	0.67	+0.5
3,724,963	+		GFF3680	0.68	-1.0
3,724,997	+		GFF3680	0.70	-0.6
3,725,002	-		GFF3680	0.70	-1.0
3,725,022	+		GFF3680	0.72	-1.9
3,725,033	+		GFF3680	0.73	+0.5
3,725,041	-		GFF3680	0.73	-0.1
3,725,046	+		GFF3680	0.74	+0.8
3,725,065	+		GFF3680	0.75	-1.4
3,725,065	+		GFF3680	0.75	+0.8
3,725,065	+		GFF3680	0.75	-0.3
3,725,073	-		GFF3680	0.75	-1.2
3,725,115	+		GFF3680	0.78	-0.5
3,725,115	+		GFF3680	0.78	-1.1
3,725,115	+		GFF3680	0.78	+0.2
3,725,123	-		GFF3680	0.79	+0.4
3,725,123	-		GFF3680	0.79	-0.9
3,725,123	-		GFF3680	0.79	+0.6
3,725,123	-		GFF3680	0.79	-0.4
3,725,182	-		GFF3680	0.83	-0.6
3,725,187	+		GFF3680	0.83	-0.0
3,725,191	+		GFF3680	0.84	-0.7
3,725,204	-		GFF3680	0.85	+0.9
3,725,239	+		GFF3680	0.87	+1.1
3,725,239	+		GFF3680	0.87	+0.2
3,725,246	-		GFF3680	0.88	+0.8
3,725,247	-		GFF3680	0.88	+2.0
3,725,247	-		GFF3680	0.88	+0.3
3,725,247	-		GFF3680	0.88	-0.2
3,725,259	+		GFF3680	0.89	+0.4
3,725,297	+				-1.0
3,725,297	+				-1.3
3,725,299	-				+0.3
3,725,319	+				-0.6
3,725,322	-				-1.2
3,725,345	+				+0.4
3,725,351	+				-0.6
3,725,353	-				+0.7
3,725,353	-				+1.3
3,725,378	+				+0.3
3,725,378	+				+0.3
3,725,378	+				+0.4
3,725,378	+				-1.5
3,725,378	+				-0.5
3,725,386	-				+0.3
3,725,386	-				+0.7
3,725,386	-				-0.4
3,725,386	-				-0.6
3,725,389	+				+0.4
3,725,396	+				-0.8
3,725,397	-				+0.6
3,725,404	-				+1.1
3,725,404	-				-2.1
3,725,478	+		GFF3681	0.60	-1.6
3,725,478	+		GFF3681	0.60	-1.0
3,725,486	-		GFF3681	0.67	+1.2
3,725,486	-		GFF3681	0.67	+0.7
3,725,497	+		GFF3681	0.76	+0.5
3,725,497	+		GFF3681	0.76	-0.2
3,725,497	+		GFF3681	0.76	-2.4
3,725,505	-		GFF3681	0.83	-0.4
3,725,515	-				+0.3
3,725,516	-				-0.5
3,725,529	+				-0.4
3,725,551	+				-0.2
3,725,551	+				-0.2
3,725,552	-				-0.7
3,725,584	+		GFF3682	0.13	-0.2
3,725,609	+		GFF3682	0.28	-1.3
3,725,611	+		GFF3682	0.29	-0.7
3,725,617	-		GFF3682	0.32	-0.3
3,725,617	-		GFF3682	0.32	-0.0
3,725,621	-		GFF3682	0.34	-0.2
3,725,643	-		GFF3682	0.47	-1.0
3,725,654	-		GFF3682	0.53	-0.3
3,725,660	-		GFF3682	0.57	-0.1
3,725,669	+		GFF3682	0.62	+1.2
3,725,669	+		GFF3682	0.62	-0.5
3,725,669	+		GFF3682	0.62	+1.2
3,725,669	+		GFF3682	0.62	+0.5
3,725,669	+		GFF3682	0.62	+0.8
3,725,669	+		GFF3682	0.62	-0.3
3,725,669	+		GFF3682	0.62	-0.9
3,725,669	+		GFF3682	0.62	-0.9
3,725,669	+		GFF3682	0.62	-0.2
3,725,669	+		GFF3682	0.62	-1.1
3,725,669	+		GFF3682	0.62	-1.1
3,725,670	-		GFF3682	0.63	-1.3
3,725,675	-		GFF3682	0.66	-1.3
3,725,675	-		GFF3682	0.66	+0.4
3,725,675	-		GFF3682	0.66	+0.8
3,725,677	-		GFF3682	0.67	+1.1
3,725,677	-		GFF3682	0.67	+0.6
3,725,677	-		GFF3682	0.67	-0.6
3,725,677	-		GFF3682	0.67	+0.4
3,725,677	-		GFF3682	0.67	-1.3
3,725,677	-		GFF3682	0.67	+0.6
3,725,677	-		GFF3682	0.67	+1.3
3,725,677	-		GFF3682	0.67	-0.3
3,725,677	-		GFF3682	0.67	+0.8
3,725,677	-		GFF3682	0.67	-0.0
3,725,677	-		GFF3682	0.67	-0.3
3,725,677	-		GFF3682	0.67	-1.3
3,725,677	-		GFF3682	0.67	-0.3
3,725,677	-		GFF3682	0.67	+0.3
3,725,677	-		GFF3682	0.67	-0.3
3,725,677	-		GFF3682	0.67	-0.0
3,725,677	-		GFF3682	0.67	-1.2
3,725,733	+				+0.4
3,725,746	-				+0.5
3,725,746	-				-0.7
3,725,754	+				-0.8
3,725,763	+				-1.0
3,725,771	-				+0.5
3,725,771	-				+0.1
3,725,771	-				+0.1
3,725,776	+				-0.2
3,725,798	+				-0.4
3,725,799	+				-0.6
3,725,805	-				-0.7
3,725,813	-				-0.5
3,725,815	-				+0.1
3,725,821	-				+0.6
3,725,826	-				-1.0
3,725,830	-				+0.2
3,725,830	-				+0.2
3,725,830	-				+0.0
3,725,834	+				-1.2
3,725,842	-				-2.5
3,725,842	-				-1.7
3,725,853	+				-0.3
3,725,861	-				+0.2
3,725,861	-				-1.5
3,725,868	-				+1.3
3,725,908	+				+0.3
3,725,933	-				+1.0
3,725,946	+				+0.7
3,725,947	+				-1.2
3,725,954	-				-0.3
3,725,966	-				-1.5
3,725,975	+				-1.4
3,726,003	-		GFF3683	0.11	+0.7
3,726,014	+		GFF3683	0.12	+0.1
3,726,014	+		GFF3683	0.12	+0.3
3,726,022	-		GFF3683	0.13	-3.0
3,726,034	-		GFF3683	0.14	-0.2
3,726,035	+		GFF3683	0.15	-0.2
3,726,045	-		GFF3683	0.16	+0.1
3,726,045	-		GFF3683	0.16	+0.9
3,726,049	-		GFF3683	0.16	-0.5
3,726,056	+		GFF3683	0.17	+0.3
3,726,066	+		GFF3683	0.18	-1.1
3,726,074	-		GFF3683	0.18	-1.3
3,726,074	-		GFF3683	0.18	+0.0
3,726,087	-		GFF3683	0.20	-1.0
3,726,087	-		GFF3683	0.20	+0.3
3,726,120	+		GFF3683	0.23	-0.9
3,726,125	+		GFF3683	0.24	-0.4
3,726,133	-		GFF3683	0.24	-2.4
3,726,195	-		GFF3683	0.31	-0.1
3,726,200	-		GFF3683	0.31	+0.0
3,726,206	+		GFF3683	0.32	-2.2
3,726,216	+		GFF3683	0.33	+0.9
3,726,216	+		GFF3683	0.33	+0.6
3,726,216	+		GFF3683	0.33	+1.0
3,726,216	+		GFF3683	0.33	+0.6
3,726,216	+		GFF3683	0.33	-0.2
3,726,216	+		GFF3683	0.33	+0.1
3,726,216	+		GFF3683	0.33	-0.4
3,726,221	+		GFF3683	0.33	-0.4
3,726,221	+		GFF3683	0.33	+1.8
3,726,224	+		GFF3683	0.33	-0.4
3,726,224	-		GFF3683	0.33	-1.2
3,726,224	-		GFF3683	0.33	+0.4
3,726,224	-		GFF3683	0.33	+1.2
3,726,224	-		GFF3683	0.33	+0.1
3,726,224	-		GFF3683	0.33	+0.1
3,726,224	-		GFF3683	0.33	+0.3
3,726,224	-		GFF3683	0.33	-1.4
3,726,229	-		GFF3683	0.34	-0.8
3,726,229	-		GFF3683	0.34	-1.4
3,726,263	+		GFF3683	0.37	-1.2
3,726,263	-		GFF3683	0.37	-0.3
3,726,268	+		GFF3683	0.38	-0.4
3,726,268	+		GFF3683	0.38	+0.9
3,726,268	+		GFF3683	0.38	-0.8
3,726,268	+		GFF3683	0.38	+0.5
3,726,273	+		GFF3683	0.38	-0.5
3,726,273	+		GFF3683	0.38	-1.2
3,726,273	+		GFF3683	0.38	-2.7
3,726,276	-		GFF3683	0.39	+2.4
3,726,276	-		GFF3683	0.39	+0.4
3,726,278	+		GFF3683	0.39	-0.6
3,726,281	-		GFF3683	0.39	+0.0
3,726,317	+		GFF3683	0.43	+0.6
3,726,351	-		GFF3683	0.46	-0.4
3,726,354	-		GFF3683	0.46	+0.0
3,726,389	+		GFF3683	0.50	-0.6
3,726,397	-		GFF3683	0.51	-0.7
3,726,404	+		GFF3683	0.51	+0.3
3,726,404	+		GFF3683	0.51	-0.8
3,726,413	-		GFF3683	0.52	-1.2
3,726,422	+		GFF3683	0.53	+0.3
3,726,424	+		GFF3683	0.53	-0.4
3,726,436	+		GFF3683	0.55	+0.7
3,726,446	+		GFF3683	0.56	-0.5
3,726,483	-		GFF3683	0.59	-0.0
3,726,488	-		GFF3683	0.60	-0.3
3,726,495	+		GFF3683	0.60	-0.1
3,726,495	+		GFF3683	0.60	-0.4
3,726,496	+		GFF3683	0.61	+0.7
3,726,501	-		GFF3683	0.61	-0.6
3,726,504	-		GFF3683	0.61	-1.2
3,726,515	+		GFF3683	0.62	-0.3
3,726,515	+		GFF3683	0.62	+0.0
3,726,515	+		GFF3683	0.62	+0.8
3,726,515	+		GFF3683	0.62	+2.0
3,726,515	+		GFF3683	0.62	-0.4
3,726,519	+		GFF3683	0.63	+1.0
3,726,523	-		GFF3683	0.63	-1.8
3,726,540	+		GFF3683	0.65	+0.6
3,726,540	+		GFF3683	0.65	-0.8
3,726,547	+		GFF3683	0.66	+0.8
3,726,548	-		GFF3683	0.66	+0.2
3,726,555	-		GFF3683	0.66	+1.2
3,726,557	+		GFF3683	0.67	+0.3
3,726,563	+		GFF3683	0.67	+0.3
3,726,563	+		GFF3683	0.67	-1.0
3,726,565	-		GFF3683	0.67	-0.4
3,726,565	-		GFF3683	0.67	-0.2
3,726,565	-		GFF3683	0.67	+0.9
3,726,565	-		GFF3683	0.67	+0.6
3,726,571	-		GFF3683	0.68	+0.2
3,726,571	-		GFF3683	0.68	-1.3
3,726,587	+		GFF3683	0.70	-1.2
3,726,587	+		GFF3683	0.70	+0.6
3,726,590	-		GFF3683	0.70	+1.0
3,726,590	-		GFF3683	0.70	-0.3
3,726,590	-		GFF3683	0.70	-1.2
3,726,590	-		GFF3683	0.70	+0.4
3,726,590	-		GFF3683	0.70	-1.6
3,726,595	-		GFF3683	0.70	+0.6
3,726,595	-		GFF3683	0.70	+1.1
3,726,597	-		GFF3683	0.71	-0.6
3,726,603	-		GFF3683	0.71	-1.7
3,726,610	-		GFF3683	0.72	+0.1
3,726,611	-		GFF3683	0.72	-1.4
3,726,616	+		GFF3683	0.73	-0.5
3,726,616	+		GFF3683	0.73	-0.8
3,726,624	-		GFF3683	0.73	+0.4
3,726,651	+		GFF3683	0.76	-1.7
3,726,656	+		GFF3683	0.77	-1.8
3,726,656	+		GFF3683	0.77	-2.9
3,726,664	-		GFF3683	0.77	+0.2
3,726,664	-		GFF3683	0.77	-1.2
3,726,673	+		GFF3683	0.78	-0.1
3,726,674	-		GFF3683	0.78	+0.5
3,726,674	-		GFF3683	0.78	+0.2
3,726,674	-		GFF3683	0.78	+0.7
3,726,675	+		GFF3683	0.78	+0.2
3,726,681	-		GFF3683	0.79	-2.1
3,726,699	-		GFF3683	0.81	-0.6
3,726,701	+		GFF3683	0.81	+0.1
3,726,703	-		GFF3683	0.81	-0.6
3,726,709	-		GFF3683	0.82	-1.1
3,726,709	-		GFF3683	0.82	+0.9
3,726,732	-		GFF3683	0.84	-0.4
3,726,734	+		GFF3683	0.84	+1.1
3,726,734	+		GFF3683	0.84	-2.0
3,726,739	+		GFF3683	0.85	-0.5
3,726,739	+		GFF3683	0.85	-0.2
3,726,742	-		GFF3683	0.85	-0.6
3,726,742	-		GFF3683	0.85	+0.8
3,726,747	-		GFF3683	0.86	-0.7
3,726,747	-		GFF3683	0.86	-1.3
3,726,753	+		GFF3683	0.86	+0.1
3,726,780	-		GFF3683	0.89	+0.3
3,726,805	-				-1.0
3,726,839	+				-0.4
3,726,839	+				+1.3
3,726,839	+				-0.3
3,726,844	+				+1.4
3,726,844	+				+0.5
3,726,844	+				-0.5
3,726,844	+				-0.4
3,726,844	+				-0.5
3,726,847	-				+0.7
3,726,847	-				+1.1
3,726,847	-				-1.5
3,726,847	-				-0.1
3,726,847	-				-0.1
3,726,852	-				+1.4
3,726,881	-				-0.6
3,726,895	+				-1.2
3,726,895	+				-2.1
3,726,900	+				+0.3
3,726,903	-				-1.7
3,726,903	-				-2.0
3,726,941	+				+0.4
3,726,941	+				+0.8
3,726,948	-				-0.9
3,726,949	-				-1.4
3,727,024	+		GFF3684	0.11	-0.4
3,727,026	+		GFF3684	0.12	-0.9
3,727,026	+		GFF3684	0.12	+1.4
3,727,026	+		GFF3684	0.12	+0.1
3,727,026	+		GFF3684	0.12	+1.4
3,727,029	+		GFF3684	0.12	-0.8
3,727,034	-		GFF3684	0.12	-0.5
3,727,036	+		GFF3684	0.12	+0.2
3,727,036	+		GFF3684	0.12	-1.9
3,727,036	+		GFF3684	0.12	-0.1
3,727,043	+		GFF3684	0.13	+0.9
3,727,043	+		GFF3684	0.13	+0.7
3,727,044	-		GFF3684	0.13	+0.6
3,727,044	-		GFF3684	0.13	+0.3
3,727,044	-		GFF3684	0.13	-1.1
3,727,044	-		GFF3684	0.13	+0.3
3,727,073	-		GFF3684	0.16	-0.3
3,727,142	-		GFF3684	0.22	+0.4
3,727,145	-		GFF3684	0.22	+0.9
3,727,156	+		GFF3684	0.23	-0.4
3,727,156	+		GFF3684	0.23	-0.3
3,727,156	+		GFF3684	0.23	+0.4
3,727,164	-		GFF3684	0.24	-0.5
3,727,164	-		GFF3684	0.24	+0.6
3,727,179	-		GFF3684	0.25	-0.2
3,727,189	+		GFF3684	0.26	+0.2
3,727,189	+		GFF3684	0.26	+1.4
3,727,191	+		GFF3684	0.26	+0.8
3,727,197	-		GFF3684	0.27	-0.2
3,727,210	+		GFF3684	0.28	-0.8
3,727,222	+		GFF3684	0.29	-0.8
3,727,223	+		GFF3684	0.29	+0.9
3,727,223	+		GFF3684	0.29	+0.4
3,727,224	-		GFF3684	0.29	+1.3
3,727,230	-		GFF3684	0.30	+0.2
3,727,231	-		GFF3684	0.30	+1.2
3,727,231	-		GFF3684	0.30	-1.5
3,727,249	-		GFF3684	0.31	+1.1
3,727,296	+		GFF3684	0.36	-2.0
3,727,296	+		GFF3684	0.36	-0.8
3,727,304	-		GFF3684	0.36	-1.2
3,727,304	-		GFF3684	0.36	-0.4
3,727,321	+		GFF3684	0.38	+0.2
3,727,327	-		GFF3684	0.38	+0.8
3,727,342	+		GFF3684	0.40	-0.2
3,727,352	-		GFF3684	0.41	-0.7
3,727,352	-		GFF3684	0.41	+0.7
3,727,352	-		GFF3684	0.41	+0.1
3,727,373	-		GFF3684	0.43	+0.8
3,727,378	+		GFF3684	0.43	-0.0
3,727,396	+		GFF3684	0.45	+0.1
3,727,404	-		GFF3684	0.45	-1.3
3,727,410	+		GFF3684	0.46	-1.9
3,727,411	+		GFF3684	0.46	+2.0
3,727,418	-		GFF3684	0.47	+0.3
3,727,419	-		GFF3684	0.47	+0.3
3,727,426	+		GFF3684	0.47	-0.8
3,727,426	+		GFF3684	0.47	-1.5
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