Strain Fitness in Sphingobium sp. HT1-2 around GFF3649

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,691,609	+				-2.0
3,691,618	+				+0.3
3,691,618	+				-1.9
3,691,623	-				+0.6
3,691,634	-				-0.2
3,691,636	-				+0.5
3,691,653	+				+0.5
3,691,655	+				-1.8
3,691,655	+				+0.9
3,691,661	-				-1.5
3,691,661	-				-2.0
3,691,661	-				+0.5
3,691,661	-				-0.3
3,691,661	-				+0.4
3,691,661	-				-0.1
3,691,663	-				-0.5
3,691,663	-				-2.2
3,691,663	-				+0.5
3,691,663	-				-0.9
3,691,668	-				-0.3
3,691,669	-				-0.5
3,691,673	+				-0.5
3,691,681	-				-1.0
3,691,683	+				-1.6
3,691,692	+				-2.0
3,691,700	-				+0.4
3,691,700	-				-0.8
3,691,702	+				+1.4
3,691,702	+				+1.7
3,691,702	+				+0.6
3,691,703	+				-0.6
3,691,710	-				-0.5
3,691,710	-				+1.1
3,691,710	-				-0.2
3,691,710	-				-0.2
3,691,710	-				-1.2
3,691,741	+				-0.7
3,691,741	+				+0.8
3,691,749	-		GFF3648	0.10	-0.3
3,691,749	-		GFF3648	0.10	-0.2
3,691,756	+		GFF3648	0.11	-1.8
3,691,756	+		GFF3648	0.11	-1.5
3,691,760	+		GFF3648	0.11	+0.2
3,691,765	-		GFF3648	0.12	-0.9
3,691,765	-		GFF3648	0.12	+0.4
3,691,775	-		GFF3648	0.13	+0.3
3,691,778	+		GFF3648	0.13	+0.3
3,691,780	+		GFF3648	0.14	+0.8
3,691,780	+		GFF3648	0.14	-0.0
3,691,781	-		GFF3648	0.14	+0.8
3,691,798	+		GFF3648	0.16	-1.5
3,691,803	+		GFF3648	0.16	+0.0
3,691,812	+		GFF3648	0.17	-0.4
3,691,815	+		GFF3648	0.17	-0.3
3,691,828	-		GFF3648	0.19	-0.3
3,691,830	+		GFF3648	0.19	+1.3
3,691,830	-		GFF3648	0.19	+0.2
3,691,835	+		GFF3648	0.20	+1.0
3,691,853	-		GFF3648	0.22	-0.4
3,691,853	-		GFF3648	0.22	-0.3
3,691,901	+		GFF3648	0.27	+0.0
3,691,906	+		GFF3648	0.28	-1.3
3,691,907	+		GFF3648	0.28	-0.3
3,691,909	-		GFF3648	0.28	-0.3
3,691,921	-		GFF3648	0.29	+0.4
3,691,927	+		GFF3648	0.30	+0.7
3,691,937	-		GFF3648	0.31	-0.0
3,691,942	-		GFF3648	0.32	+0.1
3,691,944	+		GFF3648	0.32	-1.7
3,691,947	+		GFF3648	0.32	+0.3
3,691,955	-		GFF3648	0.33	+0.5
3,691,955	-		GFF3648	0.33	+0.4
3,691,964	-		GFF3648	0.34	-0.5
3,691,965	-		GFF3648	0.34	-2.5
3,691,975	+		GFF3648	0.35	-1.1
3,691,975	+		GFF3648	0.35	+1.0
3,691,983	-		GFF3648	0.36	-1.6
3,692,019	+		GFF3648	0.40	-0.1
3,692,019	+		GFF3648	0.40	-0.0
3,692,024	+		GFF3648	0.41	+1.0
3,692,024	+		GFF3648	0.41	-0.6
3,692,032	-		GFF3648	0.42	-0.5
3,692,035	-		GFF3648	0.42	-0.9
3,692,051	+		GFF3648	0.44	-0.8
3,692,051	+		GFF3648	0.44	+0.8
3,692,051	+		GFF3648	0.44	-0.7
3,692,059	-		GFF3648	0.45	+0.3
3,692,059	-		GFF3648	0.45	-0.4
3,692,059	-		GFF3648	0.45	+0.6
3,692,059	-		GFF3648	0.45	-0.9
3,692,065	+		GFF3648	0.45	-0.1
3,692,065	-		GFF3648	0.45	+0.1
3,692,070	+		GFF3648	0.46	+0.5
3,692,070	+		GFF3648	0.46	+0.5
3,692,070	+		GFF3648	0.46	+0.9
3,692,070	+		GFF3648	0.46	+0.1
3,692,070	+		GFF3648	0.46	+0.2
3,692,070	+		GFF3648	0.46	+0.4
3,692,070	+		GFF3648	0.46	-0.8
3,692,070	+		GFF3648	0.46	-0.2
3,692,070	+		GFF3648	0.46	-1.6
3,692,070	+		GFF3648	0.46	+0.4
3,692,070	+		GFF3648	0.46	+0.1
3,692,070	+		GFF3648	0.46	+0.7
3,692,070	+		GFF3648	0.46	+1.0
3,692,070	+		GFF3648	0.46	-0.6
3,692,070	+		GFF3648	0.46	+0.4
3,692,070	+		GFF3648	0.46	-0.3
3,692,070	+		GFF3648	0.46	-0.6
3,692,070	+		GFF3648	0.46	-1.0
3,692,070	+		GFF3648	0.46	+0.1
3,692,070	+		GFF3648	0.46	+1.3
3,692,070	+		GFF3648	0.46	-0.2
3,692,070	+		GFF3648	0.46	+1.5
3,692,070	+		GFF3648	0.46	+0.7
3,692,070	+		GFF3648	0.46	-0.3
3,692,070	+		GFF3648	0.46	+1.9
3,692,070	+		GFF3648	0.46	-0.5
3,692,070	+		GFF3648	0.46	+1.0
3,692,070	+		GFF3648	0.46	-0.0
3,692,073	-		GFF3648	0.46	+0.6
3,692,075	+		GFF3648	0.46	+0.2
3,692,075	+		GFF3648	0.46	+1.1
3,692,078	-		GFF3648	0.47	+0.8
3,692,078	-		GFF3648	0.47	+0.4
3,692,078	-		GFF3648	0.47	+0.7
3,692,078	-		GFF3648	0.47	-0.5
3,692,078	-		GFF3648	0.47	-1.2
3,692,078	-		GFF3648	0.47	-2.9
3,692,078	-		GFF3648	0.47	+0.2
3,692,078	-		GFF3648	0.47	-1.5
3,692,078	-		GFF3648	0.47	-0.3
3,692,078	-		GFF3648	0.47	+0.1
3,692,078	-		GFF3648	0.47	-1.8
3,692,078	-		GFF3648	0.47	-0.8
3,692,078	-		GFF3648	0.47	-0.6
3,692,078	-		GFF3648	0.47	+0.8
3,692,078	-		GFF3648	0.47	-0.1
3,692,078	-		GFF3648	0.47	+0.4
3,692,078	-		GFF3648	0.47	+0.5
3,692,078	-		GFF3648	0.47	-1.7
3,692,078	-		GFF3648	0.47	+0.0
3,692,078	-		GFF3648	0.47	-0.4
3,692,078	-		GFF3648	0.47	+0.8
3,692,078	-		GFF3648	0.47	-0.3
3,692,083	+		GFF3648	0.47	+0.1
3,692,083	-		GFF3648	0.47	-0.9
3,692,083	-		GFF3648	0.47	-0.5
3,692,083	-		GFF3648	0.47	+1.2
3,692,083	-		GFF3648	0.47	+0.8
3,692,083	-		GFF3648	0.47	-1.4
3,692,083	-		GFF3648	0.47	-0.3
3,692,087	+		GFF3648	0.48	-0.6
3,692,129	+		GFF3648	0.52	-0.7
3,692,129	+		GFF3648	0.52	+0.0
3,692,131	+		GFF3648	0.52	+0.9
3,692,139	-		GFF3648	0.53	-1.3
3,692,149	+		GFF3648	0.54	-1.9
3,692,159	+		GFF3648	0.56	+0.9
3,692,159	+		GFF3648	0.56	+0.2
3,692,159	+		GFF3648	0.56	+0.6
3,692,159	+		GFF3648	0.56	+0.1
3,692,159	+		GFF3648	0.56	+0.5
3,692,159	+		GFF3648	0.56	+0.3
3,692,165	-		GFF3648	0.56	+0.6
3,692,167	-		GFF3648	0.56	+0.0
3,692,167	-		GFF3648	0.56	-0.1
3,692,167	-		GFF3648	0.56	+2.2
3,692,167	-		GFF3648	0.56	+0.6
3,692,167	-		GFF3648	0.56	-0.4
3,692,169	+		GFF3648	0.57	+1.0
3,692,172	-		GFF3648	0.57	+0.5
3,692,210	+		GFF3648	0.61	-0.4
3,692,210	-		GFF3648	0.61	-0.4
3,692,217	+		GFF3648	0.62	-1.7
3,692,217	+		GFF3648	0.62	-0.1
3,692,217	+		GFF3648	0.62	+1.3
3,692,217	+		GFF3648	0.62	-0.8
3,692,217	+		GFF3648	0.62	-1.9
3,692,218	+		GFF3648	0.62	-1.2
3,692,218	-		GFF3648	0.62	-0.9
3,692,223	-		GFF3648	0.63	-1.3
3,692,225	-		GFF3648	0.63	-1.0
3,692,225	-		GFF3648	0.63	+1.0
3,692,225	-		GFF3648	0.63	-0.7
3,692,262	-		GFF3648	0.67	-2.5
3,692,262	-		GFF3648	0.67	-1.1
3,692,289	+		GFF3648	0.70	-1.2
3,692,297	-		GFF3648	0.71	-1.4
3,692,297	-		GFF3648	0.71	-1.6
3,692,297	-		GFF3648	0.71	+0.4
3,692,304	+		GFF3648	0.72	-1.6
3,692,310	-		GFF3648	0.72	-0.1
3,692,312	-		GFF3648	0.73	-1.7
3,692,329	+		GFF3648	0.74	-0.8
3,692,329	+		GFF3648	0.74	-0.5
3,692,329	+		GFF3648	0.74	-0.8
3,692,337	+		GFF3648	0.75	+0.4
3,692,337	-		GFF3648	0.75	+0.9
3,692,337	-		GFF3648	0.75	+0.6
3,692,337	-		GFF3648	0.75	-1.2
3,692,339	+		GFF3648	0.76	+0.6
3,692,345	-		GFF3648	0.76	-1.2
3,692,345	-		GFF3648	0.76	+0.4
3,692,345	-		GFF3648	0.76	-0.2
3,692,407	+		GFF3648	0.83	-0.3
3,692,430	+		GFF3648	0.86	-0.4
3,692,433	-		GFF3648	0.86	-0.6
3,692,450	-		GFF3648	0.88	-1.6
3,692,476	+				-0.9
3,692,485	+				+1.3
3,692,513	+				-0.9
3,692,513	+				-0.2
3,692,518	+				+0.4
3,692,521	-				+0.6
3,692,521	-				-0.7
3,692,523	+				-0.2
3,692,526	-				-0.1
3,692,531	-				+0.6
3,692,531	-				+0.4
3,692,544	-				+0.7
3,692,553	+				-0.5
3,692,569	-				-0.3
3,692,576	+				+0.0
3,692,576	+				+1.3
3,692,576	+				+0.4
3,692,576	+				-1.0
3,692,576	+				+0.0
3,692,576	+				+0.6
3,692,584	-				-0.0
3,692,584	-				-2.0
3,692,584	-				-0.9
3,692,584	-				+1.0
3,692,584	-				+0.7
3,692,584	-				+0.9
3,692,584	-				-1.4
3,692,584	-				-0.4
3,692,584	-				+0.3
3,692,584	-				-0.1
3,692,584	-				-0.2
3,692,584	-				+0.2
3,692,584	-				+0.7
3,692,584	-				-0.4
3,692,617	-		GFF3649	0.13	+0.0
3,692,635	+		GFF3649	0.17	-0.4
3,692,671	+		GFF3649	0.25	+1.2
3,692,679	+		GFF3649	0.26	+0.8
3,692,680	+		GFF3649	0.26	-0.9
3,692,688	-		GFF3649	0.28	-1.6
3,692,718	+		GFF3649	0.35	+0.5
3,692,721	-		GFF3649	0.35	+0.9
3,692,723	+		GFF3649	0.36	+0.4
3,692,773	+		GFF3649	0.46	-0.6
3,692,773	+		GFF3649	0.46	+0.8
3,692,773	+		GFF3649	0.46	+0.3
3,692,773	+		GFF3649	0.46	-0.5
3,692,781	-		GFF3649	0.48	-1.5
3,692,781	-		GFF3649	0.48	-2.2
3,692,781	-		GFF3649	0.48	+0.6
3,692,784	+		GFF3649	0.49	+0.4
3,692,807	-		GFF3649	0.54	+0.2
3,692,821	-		GFF3649	0.57	-0.9
3,692,829	+		GFF3649	0.58	+0.7
3,692,829	+		GFF3649	0.58	-0.2
3,692,829	+		GFF3649	0.58	-1.8
3,692,829	+		GFF3649	0.58	+0.8
3,692,829	+		GFF3649	0.58	+0.0
3,692,837	+		GFF3649	0.60	-0.8
3,692,837	-		GFF3649	0.60	-1.5
3,692,837	-		GFF3649	0.60	-2.4
3,692,837	-		GFF3649	0.60	+1.4
3,692,837	-		GFF3649	0.60	-0.3
3,692,837	-		GFF3649	0.60	-2.4
3,692,837	-		GFF3649	0.60	+0.1
3,692,837	-		GFF3649	0.60	-1.6
3,692,837	-		GFF3649	0.60	+0.3
3,692,837	-		GFF3649	0.60	+0.3
3,692,839	+		GFF3649	0.60	-1.2
3,692,839	+		GFF3649	0.60	-0.5
3,692,842	-		GFF3649	0.61	+0.7
3,692,845	-		GFF3649	0.62	+0.8
3,692,845	-		GFF3649	0.62	-1.4
3,692,847	-		GFF3649	0.62	+0.3
3,692,847	-		GFF3649	0.62	-1.4
3,692,847	-		GFF3649	0.62	+1.7
3,692,847	-		GFF3649	0.62	-0.8
3,692,847	-		GFF3649	0.62	-1.9
3,692,847	-		GFF3649	0.62	+0.1
3,692,872	+		GFF3649	0.68	+0.3
3,692,880	-		GFF3649	0.69	-0.3
3,692,880	-		GFF3649	0.69	-0.4
3,692,910	+		GFF3649	0.76	-0.3
3,692,915	+		GFF3649	0.77	+0.0
3,692,918	-		GFF3649	0.77	+0.4
3,692,923	-		GFF3649	0.78	-1.2
3,692,937	-		GFF3649	0.81	+0.5
3,692,937	-		GFF3649	0.81	-0.3
3,692,939	-		GFF3649	0.82	+0.1
3,692,992	+				+0.1
3,692,992	+				-1.5
3,693,017	+				-1.0
3,693,030	-				+1.0
3,693,035	-				-0.6
3,693,058	+				+0.1
3,693,058	+				+0.8
3,693,068	+				-1.6
3,693,080	+				-1.4
3,693,086	+				-0.6
3,693,106	+				+2.0
3,693,130	+				+0.6
3,693,133	-				-1.0
3,693,139	+				+0.8
3,693,149	+				+1.6
3,693,152	-				+0.5
3,693,157	-				-0.6
3,693,167	+				+1.6
3,693,171	-				-0.8
3,693,188	-				-0.6
3,693,204	+				-2.4
3,693,210	-				-0.4
3,693,212	-				+0.2
3,693,247	+				-0.4
3,693,247	+				-0.3
3,693,253	+				+0.1
3,693,255	-				-2.1
3,693,280	+				-0.1
3,693,280	+				-0.8
3,693,287	+				+0.3
3,693,288	-				-0.6
3,693,295	+				+1.1
3,693,295	-				-1.4
3,693,300	+				-0.5
3,693,300	+				-0.1
3,693,302	-				-1.0
3,693,303	-				-0.7
3,693,311	+		GFF3650	0.10	-2.4
3,693,316	+		GFF3650	0.10	-0.3
3,693,316	+		GFF3650	0.10	+0.8
3,693,316	+		GFF3650	0.10	+0.1
3,693,316	+		GFF3650	0.10	+0.2
3,693,316	+		GFF3650	0.10	-0.3
3,693,321	+		GFF3650	0.11	+0.8
3,693,321	+		GFF3650	0.11	-0.2
3,693,321	+		GFF3650	0.11	+0.6
3,693,324	-		GFF3650	0.11	+0.5
3,693,324	-		GFF3650	0.11	-2.2
3,693,324	-		GFF3650	0.11	+0.1
3,693,324	-		GFF3650	0.11	+0.1
3,693,324	-		GFF3650	0.11	-1.8
3,693,390	-		GFF3650	0.17	+0.2
3,693,417	+		GFF3650	0.20	+1.0
3,693,426	+		GFF3650	0.20	+0.4
3,693,426	+		GFF3650	0.20	+0.2
3,693,426	+		GFF3650	0.20	-1.2
3,693,426	+		GFF3650	0.20	-2.0
3,693,433	+		GFF3650	0.21	+1.2
3,693,434	-		GFF3650	0.21	-1.0
3,693,434	-		GFF3650	0.21	+0.6
3,693,434	-		GFF3650	0.21	-1.2
3,693,435	-		GFF3650	0.21	-0.5
3,693,458	-		GFF3650	0.23	+0.8
3,693,460	+		GFF3650	0.23	+0.8
3,693,468	+		GFF3650	0.24	+0.8
3,693,468	+		GFF3650	0.24	-0.8
3,693,469	+		GFF3650	0.24	+0.3
3,693,469	+		GFF3650	0.24	+0.8
3,693,469	+		GFF3650	0.24	+1.2
3,693,476	-		GFF3650	0.25	-2.3
3,693,477	-		GFF3650	0.25	+0.4
3,693,484	-		GFF3650	0.26	-0.3
3,693,502	+		GFF3650	0.27	+0.4
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