Strain Fitness in Sphingobium sp. HT1-2 around GFF3646

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,689,063	+				-0.6
3,689,064	-				-0.8
3,689,196	+				-1.1
3,689,205	-				-0.9
3,689,244	+				-1.0
3,689,244	+				-0.1
3,689,244	+				-1.7
3,689,244	+				-0.2
3,689,244	+				-1.0
3,689,244	+				+0.4
3,689,244	+				-0.1
3,689,244	+				+0.1
3,689,249	+				-2.4
3,689,252	-				-2.4
3,689,252	-				-0.8
3,689,252	-				-0.7
3,689,252	-				-1.4
3,689,252	-				+0.3
3,689,252	-				+0.1
3,689,252	-				-1.0
3,689,252	-				+0.9
3,689,257	-				+0.6
3,689,257	-				-0.5
3,689,260	+				-0.9
3,689,262	-				-2.0
3,689,263	+				-0.4
3,689,304	-				-0.3
3,689,310	-				+0.4
3,689,378	-				+0.0
3,689,414	+				-0.5
3,689,422	-				+0.0
3,689,487	+				-2.3
3,689,490	-				+0.6
3,689,544	+				+1.3
3,689,557	-				-0.3
3,689,605	+				-0.1
3,689,606	-				+0.8
3,689,625	-				+0.7
3,689,644	+				-1.3
3,689,644	+				-0.9
3,689,644	+				-1.2
3,689,652	-				-1.0
3,689,652	-				-0.1
3,689,652	-				-1.5
3,689,652	-				+0.4
3,689,652	-				-1.0
3,689,652	-				+0.8
3,689,652	-				-0.0
3,689,658	+				-0.4
3,689,672	-				-1.8
3,689,703	+				+0.7
3,689,703	+				-1.6
3,689,709	-				-0.7
3,689,711	-				+0.1
3,689,711	-				-1.7
3,689,739	-		GFF3644	0.18	+0.8
3,689,749	-		GFF3644	0.27	+0.8
3,689,779	-		GFF3644	0.54	-0.5
3,689,783	+		GFF3644	0.57	-0.5
3,689,806	-		GFF3644	0.77	-0.3
3,689,813	+		GFF3644	0.83	+0.1
3,689,823	-				+0.5
3,689,825	+				-2.2
3,689,825	+				-2.1
3,689,825	+				-1.4
3,689,825	+				-1.3
3,689,825	+				-1.1
3,689,825	+				-0.0
3,689,833	-				+0.2
3,689,833	-				+0.1
3,689,833	-				-0.9
3,689,833	-				+0.1
3,689,833	-				-1.7
3,689,833	-				+1.2
3,689,833	-				-0.9
3,689,853	+				-1.2
3,689,853	-				-0.9
3,689,859	+				-2.4
3,689,860	-				-0.2
3,689,860	-				+0.1
3,689,861	+				-0.4
3,689,861	-				+0.0
3,689,861	-				-0.1
3,689,861	-				-0.0
3,689,871	+				-0.0
3,689,879	-				-0.9
3,689,879	-				-0.3
3,689,879	-				+0.2
3,689,879	-				-0.1
3,689,879	-				-0.6
3,689,879	-				+1.5
3,689,881	+				+0.8
3,689,943	+		GFF3645	0.51	-2.2
3,689,956	-		GFF3645	0.60	-1.1
3,689,973	-		GFF3645	0.72	+0.7
3,689,974	+		GFF3645	0.72	-0.1
3,689,975	-		GFF3645	0.73	+0.7
3,689,975	-		GFF3645	0.73	-1.9
3,689,975	-		GFF3645	0.73	-1.0
3,690,006	-				-0.5
3,690,047	+				-1.3
3,690,047	+				-0.0
3,690,047	+				-1.3
3,690,049	-				-0.3
3,690,055	-				+0.4
3,690,055	-				+0.2
3,690,055	-				-1.3
3,690,070	+				+0.6
3,690,070	+				+0.7
3,690,070	+				+0.8
3,690,075	+				-1.7
3,690,075	+				-1.1
3,690,078	-				-1.4
3,690,078	-				+0.6
3,690,083	-				-0.1
3,690,094	+				+0.3
3,690,111	+				-1.4
3,690,146	-				-0.5
3,690,150	+				-1.8
3,690,157	+				-2.2
3,690,158	-				-1.4
3,690,158	-				+1.1
3,690,158	-				-0.1
3,690,158	-				-1.1
3,690,185	+		GFF3646	0.11	+0.9
3,690,185	+		GFF3646	0.11	-2.1
3,690,193	-		GFF3646	0.12	+0.6
3,690,246	-		GFF3646	0.16	-0.0
3,690,269	+		GFF3646	0.18	+0.8
3,690,269	+		GFF3646	0.18	-0.2
3,690,277	-		GFF3646	0.19	-0.4
3,690,287	-		GFF3646	0.20	+0.5
3,690,323	+		GFF3646	0.23	-0.4
3,690,325	-		GFF3646	0.23	-0.1
3,690,336	-		GFF3646	0.24	-0.8
3,690,361	+		GFF3646	0.26	-1.1
3,690,361	+		GFF3646	0.26	-1.8
3,690,361	+		GFF3646	0.26	+1.0
3,690,361	+		GFF3646	0.26	-0.1
3,690,361	+		GFF3646	0.26	-1.6
3,690,366	+		GFF3646	0.26	+1.1
3,690,366	+		GFF3646	0.26	-2.0
3,690,366	+		GFF3646	0.26	+0.6
3,690,366	+		GFF3646	0.26	-1.0
3,690,366	+		GFF3646	0.26	+0.2
3,690,369	-		GFF3646	0.27	-1.7
3,690,374	-		GFF3646	0.27	-0.4
3,690,374	-		GFF3646	0.27	+0.8
3,690,374	-		GFF3646	0.27	-0.8
3,690,374	-		GFF3646	0.27	+0.4
3,690,374	-		GFF3646	0.27	-0.6
3,690,374	-		GFF3646	0.27	+1.0
3,690,385	+		GFF3646	0.28	+0.7
3,690,385	+		GFF3646	0.28	+1.5
3,690,385	+		GFF3646	0.28	-0.4
3,690,385	+		GFF3646	0.28	-0.5
3,690,393	+		GFF3646	0.29	-0.6
3,690,393	-		GFF3646	0.29	+0.9
3,690,393	-		GFF3646	0.29	-0.2
3,690,393	-		GFF3646	0.29	-0.7
3,690,393	-		GFF3646	0.29	-0.0
3,690,395	+		GFF3646	0.29	+1.0
3,690,397	+		GFF3646	0.29	+1.1
3,690,401	-		GFF3646	0.29	+0.0
3,690,403	-		GFF3646	0.29	+0.1
3,690,403	-		GFF3646	0.29	-2.8
3,690,403	-		GFF3646	0.29	-1.4
3,690,403	-		GFF3646	0.29	-1.5
3,690,403	-		GFF3646	0.29	-1.2
3,690,403	-		GFF3646	0.29	+0.6
3,690,403	-		GFF3646	0.29	+0.8
3,690,405	-		GFF3646	0.30	+0.7
3,690,417	-		GFF3646	0.31	-0.3
3,690,424	-		GFF3646	0.31	-0.3
3,690,424	-		GFF3646	0.31	+1.4
3,690,435	-		GFF3646	0.32	-0.4
3,690,471	+		GFF3646	0.35	-0.8
3,690,471	+		GFF3646	0.35	+0.4
3,690,471	+		GFF3646	0.35	-0.2
3,690,471	+		GFF3646	0.35	+0.5
3,690,471	+		GFF3646	0.35	-0.5
3,690,473	+		GFF3646	0.35	-1.7
3,690,479	-		GFF3646	0.36	-0.4
3,690,479	-		GFF3646	0.36	-0.5
3,690,479	-		GFF3646	0.36	-3.2
3,690,479	-		GFF3646	0.36	-0.8
3,690,479	-		GFF3646	0.36	+0.3
3,690,481	-		GFF3646	0.36	-0.8
3,690,481	-		GFF3646	0.36	+1.0
3,690,507	-		GFF3646	0.38	+0.5
3,690,511	-		GFF3646	0.39	-0.3
3,690,526	-		GFF3646	0.40	-0.4
3,690,526	-		GFF3646	0.40	+0.6
3,690,528	-		GFF3646	0.40	-0.2
3,690,547	-		GFF3646	0.42	-1.2
3,690,559	+		GFF3646	0.43	+0.7
3,690,562	-		GFF3646	0.43	-0.6
3,690,564	+		GFF3646	0.43	+0.2
3,690,567	-		GFF3646	0.43	-1.2
3,690,572	-		GFF3646	0.44	+0.8
3,690,572	-		GFF3646	0.44	+0.4
3,690,588	+		GFF3646	0.45	+1.0
3,690,588	-		GFF3646	0.45	-0.8
3,690,592	+		GFF3646	0.45	-1.3
3,690,596	-		GFF3646	0.46	-1.0
3,690,608	+		GFF3646	0.47	+0.4
3,690,610	-		GFF3646	0.47	+0.7
3,690,616	+		GFF3646	0.47	+0.2
3,690,616	+		GFF3646	0.47	-1.1
3,690,616	+		GFF3646	0.47	+1.5
3,690,616	+		GFF3646	0.47	-0.2
3,690,616	+		GFF3646	0.47	-1.4
3,690,616	+		GFF3646	0.47	+0.1
3,690,616	+		GFF3646	0.47	+0.6
3,690,616	+		GFF3646	0.47	+0.3
3,690,616	+		GFF3646	0.47	-1.2
3,690,616	+		GFF3646	0.47	-0.7
3,690,621	+		GFF3646	0.48	+1.6
3,690,621	+		GFF3646	0.48	+0.4
3,690,621	+		GFF3646	0.48	-1.1
3,690,621	+		GFF3646	0.48	-0.4
3,690,621	+		GFF3646	0.48	+0.8
3,690,621	+		GFF3646	0.48	-0.2
3,690,621	+		GFF3646	0.48	-0.6
3,690,621	+		GFF3646	0.48	-0.1
3,690,621	+		GFF3646	0.48	-1.7
3,690,624	-		GFF3646	0.48	-0.6
3,690,624	-		GFF3646	0.48	-0.2
3,690,624	-		GFF3646	0.48	-1.5
3,690,624	-		GFF3646	0.48	-0.9
3,690,624	-		GFF3646	0.48	+0.1
3,690,626	+		GFF3646	0.48	+0.2
3,690,626	+		GFF3646	0.48	-0.2
3,690,626	+		GFF3646	0.48	-1.7
3,690,626	+		GFF3646	0.48	+0.7
3,690,626	+		GFF3646	0.48	+0.9
3,690,626	+		GFF3646	0.48	-0.7
3,690,626	+		GFF3646	0.48	+0.9
3,690,626	+		GFF3646	0.48	-2.4
3,690,626	+		GFF3646	0.48	-2.2
3,690,626	+		GFF3646	0.48	-1.7
3,690,626	+		GFF3646	0.48	-2.2
3,690,626	+		GFF3646	0.48	-1.7
3,690,628	+		GFF3646	0.48	-0.1
3,690,629	-		GFF3646	0.48	+2.0
3,690,629	-		GFF3646	0.48	+0.1
3,690,629	-		GFF3646	0.48	-0.7
3,690,629	-		GFF3646	0.48	+0.4
3,690,629	-		GFF3646	0.48	-0.1
3,690,629	-		GFF3646	0.48	+0.9
3,690,629	-		GFF3646	0.48	+0.1
3,690,629	-		GFF3646	0.48	-1.1
3,690,629	-		GFF3646	0.48	-0.5
3,690,629	-		GFF3646	0.48	-0.6
3,690,629	-		GFF3646	0.48	-1.0
3,690,629	-		GFF3646	0.48	+0.1
3,690,629	-		GFF3646	0.48	-2.2
3,690,629	-		GFF3646	0.48	+0.2
3,690,631	+		GFF3646	0.49	-1.0
3,690,634	-		GFF3646	0.49	+0.4
3,690,634	-		GFF3646	0.49	+0.2
3,690,634	-		GFF3646	0.49	+0.1
3,690,634	-		GFF3646	0.49	-0.3
3,690,634	-		GFF3646	0.49	+0.2
3,690,634	-		GFF3646	0.49	-1.4
3,690,634	-		GFF3646	0.49	+0.3
3,690,634	-		GFF3646	0.49	-0.7
3,690,634	-		GFF3646	0.49	+0.5
3,690,634	-		GFF3646	0.49	-0.3
3,690,634	-		GFF3646	0.49	-0.4
3,690,634	-		GFF3646	0.49	-0.1
3,690,634	-		GFF3646	0.49	-1.1
3,690,634	-		GFF3646	0.49	-0.3
3,690,634	-		GFF3646	0.49	+0.3
3,690,634	-		GFF3646	0.49	+0.0
3,690,634	-		GFF3646	0.49	-1.8
3,690,653	+		GFF3646	0.50	+1.0
3,690,653	+		GFF3646	0.50	+0.6
3,690,661	-		GFF3646	0.51	-0.3
3,690,667	+		GFF3646	0.52	+1.8
3,690,675	-		GFF3646	0.52	-0.1
3,690,675	-		GFF3646	0.52	+0.4
3,690,701	-		GFF3646	0.54	+2.0
3,690,706	-		GFF3646	0.55	+0.4
3,690,722	+		GFF3646	0.56	+0.3
3,690,727	+		GFF3646	0.57	-0.2
3,690,734	+		GFF3646	0.57	+0.0
3,690,734	+		GFF3646	0.57	-0.9
3,690,734	+		GFF3646	0.57	+0.4
3,690,734	+		GFF3646	0.57	+0.8
3,690,734	+		GFF3646	0.57	-0.4
3,690,734	+		GFF3646	0.57	-0.3
3,690,734	+		GFF3646	0.57	-1.2
3,690,734	+		GFF3646	0.57	-0.0
3,690,734	+		GFF3646	0.57	-0.2
3,690,742	-		GFF3646	0.58	-2.0
3,690,742	-		GFF3646	0.58	-0.7
3,690,742	-		GFF3646	0.58	-0.3
3,690,742	-		GFF3646	0.58	+0.1
3,690,742	-		GFF3646	0.58	+1.0
3,690,742	-		GFF3646	0.58	-0.3
3,690,742	-		GFF3646	0.58	+0.6
3,690,742	-		GFF3646	0.58	-2.2
3,690,742	-		GFF3646	0.58	+0.4
3,690,742	-		GFF3646	0.58	-1.4
3,690,742	-		GFF3646	0.58	-2.0
3,690,742	-		GFF3646	0.58	-0.5
3,690,742	-		GFF3646	0.58	-0.6
3,690,742	-		GFF3646	0.58	-0.3
3,690,742	-		GFF3646	0.58	-0.3
3,690,742	-		GFF3646	0.58	+0.5
3,690,742	-		GFF3646	0.58	+1.5
3,690,744	+		GFF3646	0.58	+0.7
3,690,744	+		GFF3646	0.58	-0.6
3,690,744	+		GFF3646	0.58	+0.5
3,690,744	+		GFF3646	0.58	-0.3
3,690,744	+		GFF3646	0.58	+0.8
3,690,744	+		GFF3646	0.58	+0.7
3,690,744	+		GFF3646	0.58	-2.3
3,690,744	+		GFF3646	0.58	-0.3
3,690,744	+		GFF3646	0.58	+0.5
3,690,744	+		GFF3646	0.58	-0.3
3,690,744	+		GFF3646	0.58	-1.3
3,690,744	+		GFF3646	0.58	-0.5
3,690,744	+		GFF3646	0.58	+1.9
3,690,744	+		GFF3646	0.58	+0.0
3,690,744	+		GFF3646	0.58	-0.4
3,690,747	-		GFF3646	0.58	-0.6
3,690,752	-		GFF3646	0.59	+0.5
3,690,752	-		GFF3646	0.59	+0.2
3,690,752	-		GFF3646	0.59	+1.2
3,690,752	-		GFF3646	0.59	-1.1
3,690,752	-		GFF3646	0.59	+1.0
3,690,752	-		GFF3646	0.59	-0.0
3,690,752	-		GFF3646	0.59	+0.7
3,690,752	-		GFF3646	0.59	-0.8
3,690,752	-		GFF3646	0.59	-0.6
3,690,752	-		GFF3646	0.59	-1.3
3,690,752	-		GFF3646	0.59	+0.0
3,690,752	-		GFF3646	0.59	+0.7
3,690,752	-		GFF3646	0.59	-1.9
3,690,752	-		GFF3646	0.59	-1.8
3,690,752	-		GFF3646	0.59	+1.7
3,690,752	-		GFF3646	0.59	+0.6
3,690,755	-		GFF3646	0.59	-0.2
3,690,757	+		GFF3646	0.59	+0.2
3,690,757	+		GFF3646	0.59	-0.8
3,690,757	+		GFF3646	0.59	+0.6
3,690,757	+		GFF3646	0.59	+0.0
3,690,757	+		GFF3646	0.59	-1.4
3,690,757	+		GFF3646	0.59	+1.0
3,690,757	+		GFF3646	0.59	+0.2
3,690,757	+		GFF3646	0.59	-0.9
3,690,757	+		GFF3646	0.59	+1.1
3,690,757	+		GFF3646	0.59	+0.5
3,690,764	-		GFF3646	0.60	-0.1
3,690,765	-		GFF3646	0.60	-0.5
3,690,765	-		GFF3646	0.60	+0.4
3,690,765	-		GFF3646	0.60	-0.6
3,690,765	-		GFF3646	0.60	+0.9
3,690,765	-		GFF3646	0.60	+1.6
3,690,765	-		GFF3646	0.60	-1.7
3,690,765	-		GFF3646	0.60	-0.6
3,690,765	-		GFF3646	0.60	+0.6
3,690,765	-		GFF3646	0.60	+1.1
3,690,834	-		GFF3646	0.65	+1.2
3,690,844	+		GFF3646	0.66	-1.1
3,690,844	+		GFF3646	0.66	-0.2
3,690,850	+		GFF3646	0.67	-0.2
3,690,852	-		GFF3646	0.67	-0.3
3,690,869	-		GFF3646	0.68	-1.1
3,690,874	+		GFF3646	0.69	+0.7
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3,690,874	-		GFF3646	0.69	-2.0
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3,690,874	-		GFF3646	0.69	-1.0
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3,691,037	+		GFF3646	0.82	-0.7
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3,691,078	-		GFF3646	0.86	+0.1
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3,691,088	+		GFF3646	0.87	-2.1
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3,691,101	-		GFF3646	0.88	-1.4
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3,691,113	+		GFF3646	0.89	+0.1
3,691,140	-				-0.7
3,691,160	-				-0.5
3,691,160	-				-1.7
3,691,194	+				+1.7
3,691,202	-				-0.6
3,691,210	-				+0.0
3,691,215	+				-0.4
3,691,250	+				-0.6
3,691,262	+				-0.4
3,691,262	+				+0.3
3,691,262	+				+0.4
3,691,262	+				-0.5
3,691,262	-				+0.2
3,691,267	+				-0.6
3,691,269	-				-2.1
3,691,270	-				-1.0
3,691,270	-				-0.6
3,691,272	+				+1.2
3,691,276	+				-0.1
3,691,284	-				+0.9
3,691,284	-				+0.4
3,691,304	+				-0.2
3,691,309	+				+0.2
3,691,312	-				+0.6
3,691,354	-				-1.7
3,691,363	+				+0.9
3,691,363	+				+0.7
3,691,418	+				-0.5
3,691,421	-				-0.6
3,691,609	+				-2.0
3,691,618	+				+0.3
3,691,618	+				-1.9
3,691,623	-				+0.6
3,691,634	-				-0.2
3,691,636	-				+0.5
3,691,653	+				+0.5
3,691,655	+				-1.8
3,691,655	+				+0.9
3,691,661	-				-1.5
3,691,661	-				-2.0
3,691,661	-				+0.5
3,691,661	-				-0.3
3,691,661	-				+0.4
3,691,661	-				-0.1
3,691,663	-				-0.5
3,691,663	-				-2.2
3,691,663	-				+0.5
3,691,663	-				-0.9
3,691,668	-				-0.3
3,691,669	-				-0.5
3,691,673	+				-0.5
3,691,681	-				-1.0
3,691,683	+				-1.6
3,691,692	+				-2.0
3,691,700	-				+0.4
3,691,700	-				-0.8
3,691,702	+				+1.4
3,691,702	+				+1.7
3,691,702	+				+0.6
3,691,703	+				-0.6
3,691,710	-				-0.5
3,691,710	-				+1.1
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3,691,710	-				-0.2
3,691,710	-				-1.2
3,691,741	+				-0.7
3,691,741	+				+0.8
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3,691,756	+		GFF3648	0.11	-1.5
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3,691,798	+		GFF3648	0.16	-1.5
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3,691,815	+		GFF3648	0.17	-0.3
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3,691,830	+		GFF3648	0.19	+1.3
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3,691,944	+		GFF3648	0.32	-1.7
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