Strain Fitness in Sphingobium sp. HT1-2 around GFF3608

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,654,603	-				+0.8
3,654,603	-				+0.2
3,654,619	+				-0.3
3,654,619	+				-1.7
3,654,619	+				-1.1
3,654,652	+				+0.3
3,654,660	-				+0.6
3,654,660	-				-0.1
3,654,660	-				+0.2
3,654,665	+				+0.1
3,654,690	-				+1.0
3,654,691	-				-0.1
3,654,802	+				+0.4
3,654,802	+				-0.2
3,654,861	-				-1.8
3,654,871	-				-1.3
3,654,982	-				+2.3
3,654,997	-				+0.9
3,654,998	+				-1.1
3,655,015	+				+0.6
3,655,020	+				-0.4
3,655,020	+				-1.3
3,655,030	+				-2.0
3,655,030	+				-0.9
3,655,038	-				+0.2
3,655,049	+				+0.4
3,655,062	-				-0.5
3,655,083	+				-0.8
3,655,091	-				+0.5
3,655,093	+				+0.6
3,655,099	+				-1.4
3,655,103	-				+0.9
3,655,152	+				-1.5
3,655,160	-				-1.1
3,655,171	+				-1.1
3,655,188	+				-0.8
3,655,206	-		GFF3607	0.14	-0.9
3,655,223	+		GFF3607	0.19	+1.4
3,655,223	+		GFF3607	0.19	-1.2
3,655,231	-		GFF3607	0.22	+1.4
3,655,231	-		GFF3607	0.22	+0.0
3,655,231	-		GFF3607	0.22	-2.2
3,655,231	-		GFF3607	0.22	+0.4
3,655,305	+		GFF3607	0.44	-0.8
3,655,344	-		GFF3607	0.56	-1.2
3,655,352	+		GFF3607	0.58	+0.7
3,655,354	+		GFF3607	0.59	+0.5
3,655,384	+		GFF3607	0.68	-0.4
3,655,435	-		GFF3607	0.84	-2.2
3,655,457	-				-0.2
3,655,457	-				-0.2
3,655,460	+				-0.8
3,655,526	+				+0.2
3,655,533	-				-0.5
3,655,549	+				+0.0
3,655,556	+				+0.8
3,655,557	-				+0.1
3,655,557	-				+0.9
3,655,557	-				+0.1
3,655,614	+				+0.3
3,655,620	+				-1.9
3,655,752	-		GFF3608	0.15	+0.1
3,655,752	-		GFF3608	0.15	-0.0
3,655,754	+		GFF3608	0.15	+0.5
3,655,762	-		GFF3608	0.16	-0.0
3,655,779	-		GFF3608	0.18	-0.4
3,655,779	-		GFF3608	0.18	-1.9
3,655,779	-		GFF3608	0.18	-1.4
3,655,797	+		GFF3608	0.19	-0.4
3,655,841	+		GFF3608	0.23	-1.6
3,655,882	-		GFF3608	0.27	-1.2
3,655,883	+		GFF3608	0.27	+1.1
3,655,893	+		GFF3608	0.28	-0.6
3,655,893	+		GFF3608	0.28	+0.4
3,655,893	+		GFF3608	0.28	-1.4
3,655,893	+		GFF3608	0.28	+0.0
3,655,896	-		GFF3608	0.28	-0.4
3,655,898	+		GFF3608	0.28	+1.6
3,655,898	+		GFF3608	0.28	-0.8
3,655,898	+		GFF3608	0.28	-0.9
3,655,898	+		GFF3608	0.28	+0.9
3,655,906	-		GFF3608	0.29	+0.7
3,655,906	-		GFF3608	0.29	-1.1
3,655,906	-		GFF3608	0.29	+0.6
3,655,906	-		GFF3608	0.29	-1.4
3,655,906	-		GFF3608	0.29	-1.4
3,655,988	-		GFF3608	0.36	-0.8
3,656,011	+		GFF3608	0.38	+0.2
3,656,013	+		GFF3608	0.38	-0.8
3,656,016	-		GFF3608	0.39	-1.8
3,656,022	-		GFF3608	0.39	-1.2
3,656,075	-		GFF3608	0.44	-1.8
3,656,141	+		GFF3608	0.50	-1.6
3,656,141	+		GFF3608	0.50	-0.1
3,656,149	-		GFF3608	0.50	-1.3
3,656,151	+		GFF3608	0.50	+0.5
3,656,175	+		GFF3608	0.53	-2.5
3,656,176	+		GFF3608	0.53	-0.4
3,656,176	+		GFF3608	0.53	+0.8
3,656,176	+		GFF3608	0.53	-0.1
3,656,184	-		GFF3608	0.53	+0.2
3,656,197	+		GFF3608	0.54	-1.8
3,656,198	+		GFF3608	0.55	+0.4
3,656,210	-		GFF3608	0.56	+1.0
3,656,235	+		GFF3608	0.58	+0.9
3,656,243	-		GFF3608	0.58	-0.4
3,656,243	-		GFF3608	0.58	+0.3
3,656,243	-		GFF3608	0.58	-2.1
3,656,301	+		GFF3608	0.64	-1.1
3,656,305	+		GFF3608	0.64	-0.2
3,656,314	-		GFF3608	0.65	+0.3
3,656,314	-		GFF3608	0.65	+0.2
3,656,330	+		GFF3608	0.66	-1.2
3,656,335	+		GFF3608	0.67	-1.1
3,656,335	+		GFF3608	0.67	-0.7
3,656,348	+		GFF3608	0.68	-1.7
3,656,383	+		GFF3608	0.71	-1.0
3,656,383	+		GFF3608	0.71	-1.5
3,656,383	+		GFF3608	0.71	-0.4
3,656,383	+		GFF3608	0.71	-1.0
3,656,383	+		GFF3608	0.71	+1.6
3,656,383	+		GFF3608	0.71	-0.3
3,656,383	+		GFF3608	0.71	-1.1
3,656,383	+		GFF3608	0.71	-0.2
3,656,383	+		GFF3608	0.71	+0.4
3,656,383	+		GFF3608	0.71	+0.6
3,656,383	+		GFF3608	0.71	+0.9
3,656,391	-		GFF3608	0.72	-0.4
3,656,391	-		GFF3608	0.72	-0.5
3,656,391	-		GFF3608	0.72	-0.2
3,656,391	-		GFF3608	0.72	-0.1
3,656,391	-		GFF3608	0.72	-1.6
3,656,391	-		GFF3608	0.72	-1.0
3,656,391	-		GFF3608	0.72	+0.4
3,656,391	-		GFF3608	0.72	-0.7
3,656,391	-		GFF3608	0.72	-0.3
3,656,391	-		GFF3608	0.72	-1.9
3,656,391	-		GFF3608	0.72	+0.2
3,656,409	+		GFF3608	0.73	+0.6
3,656,417	-		GFF3608	0.74	-1.6
3,656,417	-		GFF3608	0.74	+1.2
3,656,421	-		GFF3608	0.74	+0.3
3,656,436	-		GFF3608	0.75	+0.1
3,656,436	-		GFF3608	0.75	-0.0
3,656,436	-		GFF3608	0.75	-0.4
3,656,436	-		GFF3608	0.75	+0.2
3,656,436	-		GFF3608	0.75	-0.5
3,656,436	-		GFF3608	0.75	+0.8
3,656,436	-		GFF3608	0.75	-1.4
3,656,446	-		GFF3608	0.76	+0.6
3,656,446	-		GFF3608	0.76	+0.6
3,656,446	-		GFF3608	0.76	+1.2
3,656,494	+		GFF3608	0.81	-1.6
3,656,494	+		GFF3608	0.81	-0.4
3,656,502	-		GFF3608	0.81	-0.6
3,656,531	+		GFF3608	0.84	+0.5
3,656,534	-		GFF3608	0.84	+1.0
3,656,534	-		GFF3608	0.84	+0.9
3,656,557	+		GFF3608	0.86	+0.7
3,656,591	+		GFF3608	0.89	+0.2
3,656,591	+		GFF3608	0.89	-0.8
3,656,592	-		GFF3608	0.89	+0.9
3,656,599	-		GFF3608	0.90	-0.1
3,656,599	-		GFF3608	0.90	+0.0
3,656,601	+				-0.0
3,656,604	-				-0.5
3,656,608	+				-0.7
3,656,609	-				+0.5
3,656,629	+				-0.6
3,656,642	-				-0.0
3,656,648	-				+0.9
3,656,652	+				-0.1
3,656,660	-				+1.4
3,656,669	-				-2.6
3,656,674	-				+0.5
3,656,684	-				-0.0
3,656,694	-				+1.1
3,656,723	+				+0.8
3,656,725	+				+1.1
3,656,728	-				+0.2
3,656,733	+				+0.5
3,656,735	+				+1.0
3,656,748	-				+1.5
3,656,772	-				-0.2
3,656,839	-				-0.1
3,656,839	-				-2.0
3,656,844	-				+0.7
3,656,929	+				-0.3
3,656,929	+				-1.7
3,656,929	+				+0.3
3,656,929	+				+1.5
3,656,929	+				-0.1
3,656,929	+				+0.8
3,656,929	+				-0.4
3,656,929	+				-1.1
3,656,929	+				-0.3
3,656,935	+				-0.5
3,656,937	-				-1.4
3,656,937	-				-0.1
3,656,937	-				+0.5
3,656,937	-				-1.0
3,656,940	+				-1.1
3,656,960	+				-1.3
3,656,968	-				+0.8
3,656,976	-				+0.5
3,657,032	+				-0.3
3,657,078	+				-0.9
3,657,086	-				+1.4
3,657,102	-				+0.3
3,657,107	-				-0.4
3,657,167	-				-0.8
3,657,167	-				+0.5
3,657,178	-				-0.4
3,657,219	+				+0.5
3,657,294	+		GFF3609	0.19	+0.0
3,657,320	-		GFF3609	0.25	-0.8
3,657,345	-		GFF3609	0.32	+0.0
3,657,406	+		GFF3609	0.47	+0.2
3,657,428	+		GFF3609	0.52	+0.2
3,657,428	+		GFF3609	0.52	+1.0
3,657,436	-		GFF3609	0.54	+0.6
3,657,436	-		GFF3609	0.54	-1.1
3,657,436	-		GFF3609	0.54	-2.2
3,657,436	-		GFF3609	0.54	+0.5
3,657,527	+		GFF3609	0.76	+1.2
3,657,534	+		GFF3609	0.78	-0.2
3,657,534	+		GFF3609	0.78	+1.8
3,657,535	-		GFF3609	0.78	+0.6
3,657,543	+		GFF3609	0.80	-2.1
3,657,553	+		GFF3609	0.83	+0.4
3,657,579	+		GFF3609	0.89	-0.1
3,657,622	+				+1.0
3,657,646	-				+1.0
3,657,662	-				-0.9
3,657,667	-				-0.1