Strain Fitness in Sphingobium sp. HT1-2 around GFF3604

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,647,663	-		GFF3602	0.59	+0.9
3,647,666	+		GFF3602	0.59	+1.1
3,647,699	+		GFF3602	0.62	-0.1
3,647,707	-		GFF3602	0.63	+0.1
3,647,716	-		GFF3602	0.64	+0.0
3,647,716	-		GFF3602	0.64	-1.6
3,647,778	+		GFF3602	0.70	-0.4
3,647,782	+		GFF3602	0.70	+1.1
3,647,782	+		GFF3602	0.70	-1.2
3,647,791	+		GFF3602	0.71	+1.0
3,647,829	+		GFF3602	0.75	-0.1
3,647,836	+		GFF3602	0.75	-0.3
3,647,897	+		GFF3602	0.81	-0.3
3,647,898	+		GFF3602	0.81	-1.5
3,647,898	+		GFF3602	0.81	-1.1
3,647,906	-		GFF3602	0.82	-0.3
3,647,922	+		GFF3602	0.83	-0.9
3,647,930	-		GFF3602	0.84	-1.4
3,647,930	-		GFF3602	0.84	+0.7
3,647,948	-		GFF3602	0.86	-1.7
3,647,966	+		GFF3602	0.87	+0.8
3,647,966	+		GFF3602	0.87	-0.4
3,647,966	+		GFF3602	0.87	-0.0
3,647,974	-		GFF3602	0.88	-0.8
3,647,974	-		GFF3602	0.88	-0.9
3,647,974	-		GFF3602	0.88	+0.4
3,647,974	-		GFF3602	0.88	-0.4
3,647,974	-		GFF3602	0.88	+0.6
3,647,985	+		GFF3602	0.89	+1.3
3,647,989	-		GFF3602	0.89	+1.1
3,648,004	+				-1.7
3,648,007	+				+0.2
3,648,010	-				+0.4
3,648,010	-				-0.6
3,648,038	+				-1.9
3,648,046	-				-0.2
3,648,046	-				-1.4
3,648,081	+				-0.1
3,648,082	+				-1.3
3,648,087	+				-1.3
3,648,087	+				-0.3
3,648,089	-				+0.3
3,648,091	+				+0.4
3,648,095	-				-0.6
3,648,095	-				+0.2
3,648,095	-				-1.8
3,648,095	-				+1.4
3,648,095	-				-0.3
3,648,098	+				+0.7
3,648,099	-				+0.2
3,648,103	+				-1.6
3,648,103	+				-0.8
3,648,103	+				+1.0
3,648,164	+				-1.6
3,648,173	+				-2.5
3,648,173	+				+1.3
3,648,173	+				-1.3
3,648,173	+				+1.7
3,648,173	+				-1.2
3,648,173	+				-0.3
3,648,173	+				-1.7
3,648,173	+				-0.9
3,648,173	+				-0.4
3,648,173	-				-0.2
3,648,181	-				-0.3
3,648,181	-				-0.8
3,648,181	-				+0.1
3,648,181	-				+0.0
3,648,181	-				+0.3
3,648,181	-				+0.5
3,648,181	-				+0.5
3,648,181	-				-0.2
3,648,181	-				+0.2
3,648,181	-				-0.7
3,648,181	-				-0.1
3,648,183	+				+2.6
3,648,188	-				-0.3
3,648,191	+				+0.1
3,648,191	-				+0.4
3,648,191	-				+0.4
3,648,192	-				-0.2
3,648,198	+				-1.5
3,648,203	+				-0.4
3,648,203	+				+2.0
3,648,203	+				-0.7
3,648,203	+				-0.2
3,648,203	+				-1.0
3,648,206	-				+0.4
3,648,206	-				-2.5
3,648,211	-				+0.5
3,648,211	-				-0.6
3,648,212	-				-1.1
3,648,218	+				-1.0
3,648,226	-				-2.3
3,648,235	-				-0.2
3,648,281	+				-2.4
3,648,281	+				-0.8
3,648,281	+				-0.5
3,648,281	+				+0.2
3,648,289	-				-0.0
3,648,289	-				-1.0
3,648,289	-				+0.1
3,648,289	-				-0.5
3,648,289	-				-1.1
3,648,289	-				-1.0
3,648,296	-				-1.3
3,648,296	-				-1.3
3,648,298	+				+1.2
3,648,305	+				-0.1
3,648,308	-				-1.1
3,648,317	+				-0.5
3,648,325	-				-0.0
3,648,370	+		GFF3603	0.22	-1.3
3,648,375	+		GFF3603	0.24	+0.0
3,648,378	-		GFF3603	0.25	-0.5
3,648,413	+		GFF3603	0.35	-1.2
3,648,430	+		GFF3603	0.40	-0.4
3,648,431	-		GFF3603	0.41	-1.2
3,648,453	-		GFF3603	0.47	-2.3
3,648,474	-		GFF3603	0.53	-0.0
3,648,476	+		GFF3603	0.54	+1.2
3,648,480	+		GFF3603	0.55	+0.2
3,648,480	+		GFF3603	0.55	-0.0
3,648,488	-		GFF3603	0.58	+0.2
3,648,502	+		GFF3603	0.62	-1.5
3,648,504	+		GFF3603	0.62	+0.0
3,648,505	-		GFF3603	0.63	-0.1
3,648,519	+		GFF3603	0.67	-0.0
3,648,546	+		GFF3603	0.75	-0.8
3,648,588	+		GFF3603	0.88	+0.9
3,648,588	+		GFF3603	0.88	+0.4
3,648,592	+		GFF3603	0.89	-0.2
3,648,593	+		GFF3603	0.89	-1.3
3,648,596	-				+0.2
3,648,601	-				-1.5
3,648,601	-				-0.8
3,648,617	+				-0.0
3,648,623	+				-1.2
3,648,623	+				-0.1
3,648,623	+				+0.7
3,648,623	+				-2.2
3,648,630	-				-1.3
3,648,630	-				-1.1
3,648,631	+				-0.9
3,648,631	+				+0.2
3,648,631	+				-1.0
3,648,637	-				+0.1
3,648,640	+				-0.5
3,648,646	-				-0.7
3,648,649	-				+1.6
3,648,685	-				-1.2
3,648,687	+				-0.9
3,648,687	+				-0.6
3,648,687	+				+0.4
3,648,687	+				+0.4
3,648,687	+				-0.3
3,648,687	+				+1.4
3,648,695	-				-1.2
3,648,695	-				-0.2
3,648,695	-				-0.4
3,648,700	-				+0.1
3,648,724	+				-0.2
3,648,724	+				-1.5
3,648,724	+				-1.8
3,648,724	+				-1.3
3,648,724	+				-1.9
3,648,732	-				+0.8
3,648,732	-				-1.5
3,648,732	-				-0.5
3,648,756	-				-1.2
3,648,761	-				+1.6
3,648,773	+				+1.2
3,648,781	-				-1.5
3,648,819	-				-1.8
3,648,824	-				+0.6
3,648,824	-				+0.2
3,648,825	+				-0.5
3,648,833	-				+0.3
3,648,841	+				-0.2
3,648,841	+				+0.6
3,648,849	-				+0.3
3,648,852	+				-0.8
3,648,860	-		GFF3604	0.10	-0.9
3,648,867	+		GFF3604	0.11	+0.2
3,648,912	-		GFF3604	0.13	-0.1
3,648,938	+		GFF3604	0.14	-1.5
3,648,938	+		GFF3604	0.14	+0.2
3,648,938	+		GFF3604	0.14	-1.2
3,648,946	-		GFF3604	0.14	-1.2
3,648,956	-		GFF3604	0.15	-0.2
3,648,971	-		GFF3604	0.16	-1.9
3,648,996	+		GFF3604	0.17	+0.6
3,648,996	+		GFF3604	0.17	-2.1
3,649,014	+		GFF3604	0.18	-2.2
3,649,055	-		GFF3604	0.20	+1.0
3,649,062	+		GFF3604	0.20	-1.5
3,649,062	+		GFF3604	0.20	-1.1
3,649,062	+		GFF3604	0.20	-0.9
3,649,077	+		GFF3604	0.21	+1.0
3,649,085	-		GFF3604	0.21	-1.7
3,649,096	-		GFF3604	0.22	-0.0
3,649,096	-		GFF3604	0.22	-0.7
3,649,106	-		GFF3604	0.22	-0.5
3,649,126	+		GFF3604	0.23	-1.3
3,649,188	+		GFF3604	0.26	-1.2
3,649,188	+		GFF3604	0.26	-1.7
3,649,190	-		GFF3604	0.26	-1.9
3,649,196	-		GFF3604	0.26	+0.2
3,649,216	-		GFF3604	0.27	+0.6
3,649,256	+		GFF3604	0.29	+0.4
3,649,264	-		GFF3604	0.30	-2.3
3,649,272	-		GFF3604	0.30	+1.0
3,649,286	-		GFF3604	0.31	-0.2
3,649,294	-		GFF3604	0.31	-1.2
3,649,299	-		GFF3604	0.31	+1.1
3,649,299	-		GFF3604	0.31	-1.4
3,649,299	-		GFF3604	0.31	-1.1
3,649,299	-		GFF3604	0.31	+1.4
3,649,299	-		GFF3604	0.31	-0.4
3,649,303	+		GFF3604	0.31	+0.9
3,649,303	+		GFF3604	0.31	-1.2
3,649,311	-		GFF3604	0.32	-1.4
3,649,325	+		GFF3604	0.32	+0.4
3,649,337	-		GFF3604	0.33	+1.6
3,649,337	-		GFF3604	0.33	-1.6
3,649,342	-		GFF3604	0.33	-1.5
3,649,384	+		GFF3604	0.35	-0.2
3,649,437	+		GFF3604	0.38	+0.4
3,649,437	+		GFF3604	0.38	-1.3
3,649,441	-		GFF3604	0.38	+0.4
3,649,445	-		GFF3604	0.38	+0.8
3,649,458	+		GFF3604	0.39	-0.8
3,649,504	-		GFF3604	0.41	-1.8
3,649,504	-		GFF3604	0.41	+0.3
3,649,529	-		GFF3604	0.42	-1.8
3,649,564	-		GFF3604	0.44	-0.3
3,649,568	+		GFF3604	0.44	-0.3
3,649,568	+		GFF3604	0.44	-1.4
3,649,569	-		GFF3604	0.44	-0.7
3,649,573	+		GFF3604	0.44	+0.3
3,649,573	+		GFF3604	0.44	-1.2
3,649,576	-		GFF3604	0.44	+1.0
3,649,576	-		GFF3604	0.44	-0.6
3,649,576	-		GFF3604	0.44	+0.3
3,649,576	-		GFF3604	0.44	+0.2
3,649,576	-		GFF3604	0.44	+0.7
3,649,576	-		GFF3604	0.44	+0.8
3,649,581	-		GFF3604	0.45	-1.4
3,649,581	-		GFF3604	0.45	-1.2
3,649,581	-		GFF3604	0.45	+1.1
3,649,594	+		GFF3604	0.45	+0.5
3,649,604	+		GFF3604	0.46	+0.4
3,649,614	+		GFF3604	0.46	+0.3
3,649,637	+		GFF3604	0.47	+0.2
3,649,655	-		GFF3604	0.48	-1.6
3,649,679	-		GFF3604	0.49	-0.8
3,649,715	-		GFF3604	0.51	-2.0
3,649,716	-		GFF3604	0.51	+1.6
3,649,726	-		GFF3604	0.51	+0.9
3,649,738	-		GFF3604	0.52	-0.8
3,649,740	-		GFF3604	0.52	-0.0
3,649,799	+		GFF3604	0.55	-1.4
3,649,799	+		GFF3604	0.55	+0.7
3,649,825	-		GFF3604	0.56	-0.4
3,649,879	-		GFF3604	0.59	-2.1
3,649,904	-		GFF3604	0.60	-1.5
3,649,915	+		GFF3604	0.60	+0.6
3,649,915	+		GFF3604	0.60	-1.2
3,649,920	+		GFF3604	0.61	-1.4
3,649,920	+		GFF3604	0.61	-0.3
3,650,020	+		GFF3604	0.65	-0.6
3,650,022	-		GFF3604	0.66	-1.2
3,650,110	-		GFF3604	0.70	-2.5
3,650,112	-		GFF3604	0.70	+0.8
3,650,126	+		GFF3604	0.71	+0.8
3,650,131	+		GFF3604	0.71	-0.9
3,650,134	-		GFF3604	0.71	-0.3
3,650,134	-		GFF3604	0.71	-1.2
3,650,162	+		GFF3604	0.72	+0.4
3,650,172	+		GFF3604	0.73	-0.5
3,650,172	+		GFF3604	0.73	-0.6
3,650,172	+		GFF3604	0.73	-0.7
3,650,180	-		GFF3604	0.73	-0.1
3,650,180	-		GFF3604	0.73	-2.0
3,650,195	+		GFF3604	0.74	-1.5
3,650,198	-		GFF3604	0.74	+0.0
3,650,207	-		GFF3604	0.74	-1.4
3,650,232	-		GFF3604	0.76	+0.3
3,650,241	+		GFF3604	0.76	-0.1
3,650,241	+		GFF3604	0.76	-0.2
3,650,270	+		GFF3604	0.77	+1.2
3,650,280	+		GFF3604	0.78	+1.0
3,650,280	-		GFF3604	0.78	-0.4
3,650,303	+		GFF3604	0.79	-1.0
3,650,309	+		GFF3604	0.79	+0.6
3,650,311	-		GFF3604	0.79	-0.3
3,650,333	+		GFF3604	0.80	-0.5
3,650,341	-		GFF3604	0.81	-0.3
3,650,381	-		GFF3604	0.83	+0.4
3,650,382	+		GFF3604	0.83	-1.2
3,650,388	+		GFF3604	0.83	-1.8
3,650,500	+		GFF3604	0.88	-0.2
3,650,507	-		GFF3604	0.89	+1.4
3,650,567	+				-1.2
3,650,591	-				-1.2
3,650,592	-				-0.8
3,650,616	-				-1.0
3,650,622	-				-0.5
3,650,635	+				+0.1
3,650,635	+				-1.6
3,650,635	+				+0.8
3,650,640	+				-0.7
3,650,640	+				+0.5
3,650,643	-				+0.7
3,650,643	-				+1.2
3,650,643	-				-0.5
3,650,661	-				-0.4
3,650,711	+				-0.1
3,650,711	+				+0.6
3,650,711	+				-0.7
3,650,722	+				-0.3
3,650,722	+				-0.2
3,650,722	+				-0.9
3,650,732	+				+0.3
3,650,740	-				-0.3
3,650,740	-				-1.7
3,650,764	+				+0.4
3,650,764	+				-0.4
3,650,772	-				-0.2
3,650,772	-				-1.2
3,651,065	+				-0.1
3,651,073	-				-0.4
3,651,074	+				-1.8
3,651,076	+				+0.0
3,651,078	-				-0.9
3,651,093	+				+0.1
3,651,098	+				+0.2
3,651,102	+				+0.1
3,651,103	+				-1.5
3,651,112	+				-0.1
3,651,112	+				+0.3
3,651,119	+				+0.1
3,651,119	+				-0.3
3,651,119	+				-1.3
3,651,119	+				-0.7
3,651,119	-				-1.7
3,651,120	-				-0.1
3,651,120	-				-0.3
3,651,127	-				-0.9
3,651,127	-				-1.8
3,651,127	-				-0.9
3,651,127	-				-1.3
3,651,127	-				-1.4
3,651,129	+				-0.1
3,651,129	+				-1.3
3,651,129	+				+0.6
3,651,129	+				+0.7
3,651,129	+				-0.9
3,651,129	+				+0.3
3,651,129	+				-0.3
3,651,130	-				-0.6
3,651,130	-				-1.0
3,651,135	-				-0.1
3,651,137	+				+0.2
3,651,137	+				-1.1
3,651,137	-				+0.1
3,651,166	+				+0.4
3,651,173	-				-0.3
3,651,173	-				-0.8
3,651,181	-				-0.7
3,651,186	+				+0.1
3,651,228	-				-0.1
3,651,256	-				-0.7
3,651,265	+				+0.6
3,651,273	-				-0.2
3,651,273	-				+0.5
3,651,274	-				-1.4
3,651,311	-				-1.2
3,651,333	+				-0.4
3,651,352	-				+0.7
3,651,366	+				-0.4
3,651,367	-				-1.6
3,651,391	+				-0.4
3,651,398	-				-1.8
3,651,413	+				-1.3
3,651,413	+				+0.2
3,651,413	+				-1.4
3,651,421	-				+0.8
3,651,421	-				+0.6
3,651,421	-				-1.3
3,651,421	-				-0.6
3,651,421	-				+0.3
3,651,421	-				-0.3
3,651,422	+				+0.6
3,651,428	+				-0.1
3,651,434	+				-1.0
3,651,434	+				-1.5
3,651,439	+				+0.9
3,651,439	+				+0.4
3,651,439	+				-0.3
3,651,439	+				+0.9
3,651,439	+				-0.2
3,651,439	+				+0.3
3,651,442	-				+0.9
3,651,444	+				+0.2
3,651,444	+				-0.5
3,651,447	-				-0.3
3,651,447	-				+0.6
3,651,449	+				+0.4
3,651,449	+				-0.4
3,651,452	-				-1.2
3,651,452	-				-1.2
3,651,452	-				+0.0
3,651,462	+				-1.9
3,651,462	+				-1.4
3,651,465	-				-2.2
3,651,502	+				-0.5
3,651,502	+				+1.1
3,651,502	+				+1.0
3,651,502	+				+0.8
3,651,502	+				+0.4
3,651,502	+				-0.1
3,651,502	+				-0.1
3,651,502	+				-0.2
3,651,509	-				+1.0
3,651,510	-				+0.2
3,651,510	-				-0.2
3,651,510	-				-1.8
3,651,520	+				+1.2
3,651,525	+				-1.9
3,651,529	-				+0.1
3,651,529	-				+0.4
3,651,533	-				+1.0
3,651,533	-				-0.6
3,651,533	-				-1.3
3,651,538	+				+1.0
3,651,538	+				+0.3
3,651,539	-				-0.0
3,651,540	+				+0.1
3,651,540	+				+0.5
3,651,548	-		GFF3606	0.10	+1.0
3,651,548	-		GFF3606	0.10	-1.4
3,651,555	+		GFF3606	0.10	-1.9
3,651,555	+		GFF3606	0.10	-1.2
3,651,555	+		GFF3606	0.10	-1.9
3,651,555	+		GFF3606	0.10	+0.3
3,651,555	+		GFF3606	0.10	-0.6
3,651,555	+		GFF3606	0.10	-1.7
3,651,555	+		GFF3606	0.10	-0.7
3,651,555	+		GFF3606	0.10	-1.1
3,651,555	+		GFF3606	0.10	-0.2
3,651,555	+		GFF3606	0.10	-0.4
3,651,555	+		GFF3606	0.10	-0.5
3,651,563	-		GFF3606	0.11	-1.9
3,651,563	-		GFF3606	0.11	+0.7
3,651,563	-		GFF3606	0.11	+1.0
3,651,563	-		GFF3606	0.11	-0.5
3,651,563	-		GFF3606	0.11	+1.1
3,651,563	-		GFF3606	0.11	-0.4
3,651,563	-		GFF3606	0.11	-0.6
3,651,563	-		GFF3606	0.11	-0.5
3,651,563	-		GFF3606	0.11	-0.2
3,651,563	-		GFF3606	0.11	+0.7
3,651,563	-		GFF3606	0.11	-0.0
3,651,563	-		GFF3606	0.11	+0.4
3,651,563	-		GFF3606	0.11	+0.6
3,651,563	-		GFF3606	0.11	-0.0
3,651,605	-		GFF3606	0.12	+0.2
3,651,605	-		GFF3606	0.12	+0.1
3,651,605	-		GFF3606	0.12	-0.8
3,651,632	+		GFF3606	0.13	-0.0
3,651,638	+		GFF3606	0.13	-0.5
3,651,659	-		GFF3606	0.13	+0.2
3,651,661	+		GFF3606	0.13	-0.4
3,651,669	+		GFF3606	0.14	+0.8
3,651,671	+		GFF3606	0.14	+1.6
3,651,671	+		GFF3606	0.14	-1.6
3,651,671	+		GFF3606	0.14	+1.0
3,651,671	+		GFF3606	0.14	-0.9
3,651,671	+		GFF3606	0.14	-1.5
3,651,671	+		GFF3606	0.14	-1.6
3,651,671	+		GFF3606	0.14	+1.3
3,651,671	+		GFF3606	0.14	-0.0
3,651,671	+		GFF3606	0.14	+0.9
3,651,679	-		GFF3606	0.14	-0.4
3,651,679	-		GFF3606	0.14	+1.1
3,651,679	-		GFF3606	0.14	-1.8
3,651,679	-		GFF3606	0.14	+0.2
3,651,679	-		GFF3606	0.14	-0.1
3,651,679	-		GFF3606	0.14	+0.1