Strain Fitness in Sphingobium sp. HT1-2 around GFF3597

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,640,165	-		GFF3596	0.22	-0.0
3,640,198	+		GFF3596	0.25	+0.8
3,640,208	+		GFF3596	0.26	-0.6
3,640,284	-		GFF3596	0.32	-0.5
3,640,292	+		GFF3596	0.33	-0.0
3,640,310	-		GFF3596	0.35	-0.6
3,640,312	+		GFF3596	0.35	+0.1
3,640,312	+		GFF3596	0.35	-0.5
3,640,312	+		GFF3596	0.35	-0.2
3,640,312	+		GFF3596	0.35	+0.8
3,640,315	-		GFF3596	0.35	-1.8
3,640,315	-		GFF3596	0.35	-0.3
3,640,320	-		GFF3596	0.36	-1.4
3,640,320	-		GFF3596	0.36	-1.9
3,640,320	-		GFF3596	0.36	-0.4
3,640,320	-		GFF3596	0.36	+1.1
3,640,344	-		GFF3596	0.38	-0.4
3,640,350	+		GFF3596	0.38	+0.3
3,640,351	-		GFF3596	0.38	-0.3
3,640,355	+		GFF3596	0.39	-0.4
3,640,368	+		GFF3596	0.40	-0.3
3,640,373	+		GFF3596	0.40	-0.1
3,640,373	+		GFF3596	0.40	-0.2
3,640,373	+		GFF3596	0.40	-0.5
3,640,373	+		GFF3596	0.40	+0.4
3,640,373	+		GFF3596	0.40	-1.5
3,640,373	+		GFF3596	0.40	-0.9
3,640,373	+		GFF3596	0.40	+0.5
3,640,373	+		GFF3596	0.40	-1.9
3,640,373	+		GFF3596	0.40	-1.2
3,640,373	+		GFF3596	0.40	+0.1
3,640,376	-		GFF3596	0.40	+1.5
3,640,376	-		GFF3596	0.40	-1.6
3,640,376	-		GFF3596	0.40	+1.7
3,640,376	-		GFF3596	0.40	+1.0
3,640,378	+		GFF3596	0.40	-0.6
3,640,378	+		GFF3596	0.40	-0.4
3,640,378	+		GFF3596	0.40	-0.3
3,640,378	+		GFF3596	0.40	+0.7
3,640,378	+		GFF3596	0.40	-1.5
3,640,381	-		GFF3596	0.41	+0.6
3,640,381	-		GFF3596	0.41	-0.3
3,640,381	-		GFF3596	0.41	+0.7
3,640,381	-		GFF3596	0.41	-1.9
3,640,381	-		GFF3596	0.41	-0.4
3,640,381	-		GFF3596	0.41	-2.6
3,640,381	-		GFF3596	0.41	-0.4
3,640,381	-		GFF3596	0.41	-0.6
3,640,381	-		GFF3596	0.41	-0.2
3,640,381	-		GFF3596	0.41	-0.5
3,640,386	-		GFF3596	0.41	+0.7
3,640,386	-		GFF3596	0.41	-2.0
3,640,386	-		GFF3596	0.41	-1.5
3,640,386	-		GFF3596	0.41	-0.3
3,640,386	-		GFF3596	0.41	-0.2
3,640,386	-		GFF3596	0.41	-2.5
3,640,439	+		GFF3596	0.46	-0.6
3,640,442	-		GFF3596	0.46	+0.3
3,640,446	-		GFF3596	0.46	-2.4
3,640,464	-		GFF3596	0.48	-1.8
3,640,498	+		GFF3596	0.51	-0.5
3,640,498	-		GFF3596	0.51	+0.0
3,640,503	+		GFF3596	0.51	-1.2
3,640,519	-		GFF3596	0.53	+0.5
3,640,528	+		GFF3596	0.53	-0.9
3,640,563	+		GFF3596	0.56	+0.4
3,640,563	+		GFF3596	0.56	-1.9
3,640,563	+		GFF3596	0.56	+0.2
3,640,563	+		GFF3596	0.56	+0.6
3,640,563	+		GFF3596	0.56	+0.1
3,640,563	+		GFF3596	0.56	-0.0
3,640,563	+		GFF3596	0.56	-0.5
3,640,563	+		GFF3596	0.56	-0.4
3,640,566	-		GFF3596	0.57	-2.8
3,640,571	+		GFF3596	0.57	-1.5
3,640,571	-		GFF3596	0.57	+1.1
3,640,571	-		GFF3596	0.57	-0.5
3,640,571	-		GFF3596	0.57	-1.0
3,640,571	-		GFF3596	0.57	-0.9
3,640,571	-		GFF3596	0.57	+2.1
3,640,571	-		GFF3596	0.57	-0.7
3,640,571	-		GFF3596	0.57	+0.6
3,640,571	-		GFF3596	0.57	+0.9
3,640,571	-		GFF3596	0.57	-1.9
3,640,571	-		GFF3596	0.57	+0.2
3,640,571	-		GFF3596	0.57	+0.5
3,640,571	-		GFF3596	0.57	+1.2
3,640,571	-		GFF3596	0.57	+0.3
3,640,571	-		GFF3596	0.57	+0.6
3,640,595	-		GFF3596	0.59	+1.0
3,640,598	+		GFF3596	0.59	-0.0
3,640,632	-		GFF3596	0.62	+0.9
3,640,635	-		GFF3596	0.62	+1.1
3,640,642	+		GFF3596	0.63	+0.1
3,640,642	+		GFF3596	0.63	-0.5
3,640,642	+		GFF3596	0.63	-0.6
3,640,642	+		GFF3596	0.63	-0.0
3,640,645	-		GFF3596	0.63	+0.1
3,640,650	-		GFF3596	0.64	-0.9
3,640,650	-		GFF3596	0.64	-1.6
3,640,650	-		GFF3596	0.64	-0.5
3,640,650	-		GFF3596	0.64	+0.3
3,640,652	+		GFF3596	0.64	-0.2
3,640,658	+		GFF3596	0.64	+0.4
3,640,658	+		GFF3596	0.64	+0.1
3,640,658	+		GFF3596	0.64	-0.7
3,640,660	-		GFF3596	0.65	+0.4
3,640,663	+		GFF3596	0.65	+0.2
3,640,663	+		GFF3596	0.65	-0.8
3,640,663	+		GFF3596	0.65	+1.0
3,640,663	+		GFF3596	0.65	+0.3
3,640,663	+		GFF3596	0.65	+0.4
3,640,663	+		GFF3596	0.65	+0.5
3,640,663	+		GFF3596	0.65	-1.8
3,640,663	+		GFF3596	0.65	+0.7
3,640,668	+		GFF3596	0.65	+0.3
3,640,668	+		GFF3596	0.65	+0.2
3,640,668	+		GFF3596	0.65	+0.3
3,640,668	+		GFF3596	0.65	-0.9
3,640,671	-		GFF3596	0.65	+0.4
3,640,671	-		GFF3596	0.65	+0.1
3,640,671	-		GFF3596	0.65	-1.1
3,640,671	-		GFF3596	0.65	+1.6
3,640,671	-		GFF3596	0.65	+0.1
3,640,671	-		GFF3596	0.65	-1.4
3,640,671	-		GFF3596	0.65	-1.5
3,640,673	+		GFF3596	0.66	+0.4
3,640,673	+		GFF3596	0.66	-0.6
3,640,676	-		GFF3596	0.66	-0.4
3,640,676	-		GFF3596	0.66	+1.1
3,640,676	-		GFF3596	0.66	-0.9
3,640,686	-		GFF3596	0.67	-1.1
3,640,686	-		GFF3596	0.67	+0.7
3,640,686	-		GFF3596	0.67	+0.2
3,640,687	+		GFF3596	0.67	+0.6
3,640,695	+		GFF3596	0.68	+0.7
3,640,710	+		GFF3596	0.69	-0.4
3,640,712	-		GFF3596	0.69	-0.2
3,640,720	+		GFF3596	0.70	-0.6
3,640,720	+		GFF3596	0.70	+0.5
3,640,728	-		GFF3596	0.70	-0.4
3,640,730	-		GFF3596	0.71	-1.3
3,640,752	-		GFF3596	0.72	-1.1
3,640,762	+		GFF3596	0.73	-1.2
3,640,770	-		GFF3596	0.74	-0.9
3,640,786	-		GFF3596	0.75	-0.2
3,640,805	+		GFF3596	0.77	-1.1
3,640,805	+		GFF3596	0.77	+0.8
3,640,805	+		GFF3596	0.77	+0.1
3,640,805	+		GFF3596	0.77	-1.7
3,640,805	+		GFF3596	0.77	-1.1
3,640,813	-		GFF3596	0.78	-0.2
3,640,813	-		GFF3596	0.78	+0.9
3,640,813	-		GFF3596	0.78	-0.4
3,640,813	-		GFF3596	0.78	-1.5
3,640,813	-		GFF3596	0.78	+0.4
3,640,859	-		GFF3596	0.82	-1.0
3,640,859	-		GFF3596	0.82	+0.8
3,640,870	-		GFF3596	0.82	-2.1
3,640,884	-		GFF3596	0.84	+1.1
3,640,923	+		GFF3596	0.87	-0.2
3,640,926	-		GFF3596	0.87	-0.3
3,640,926	-		GFF3596	0.87	+0.6
3,640,930	+		GFF3596	0.88	+0.9
3,640,931	-		GFF3596	0.88	+0.3
3,640,931	-		GFF3596	0.88	-0.2
3,640,931	-		GFF3596	0.88	-0.0
3,640,941	+		GFF3596	0.88	-2.6
3,640,948	-		GFF3596	0.89	+0.3
3,640,948	-		GFF3596	0.89	-0.9
3,640,950	+		GFF3596	0.89	+0.2
3,640,950	+		GFF3596	0.89	-0.7
3,640,958	-				-0.2
3,640,958	-				+0.3
3,640,958	-				-0.4
3,640,958	-				+0.5
3,640,975	+				-1.3
3,640,983	-				+0.3
3,640,999	-				-1.1
3,641,001	+				-0.4
3,641,001	+				+0.6
3,641,009	-				-0.2
3,641,009	-				+0.8
3,641,019	-				+0.7
3,641,079	-				+0.7
3,641,112	-				+1.0
3,641,123	+				-1.8
3,641,123	-				+0.2
3,641,125	+				-0.0
3,641,139	+				+0.8
3,641,143	-				-0.1
3,641,161	+				-2.9
3,641,169	-				+0.0
3,641,171	-				-0.6
3,641,172	+				-3.0
3,641,172	+				-0.7
3,641,172	+				-0.3
3,641,172	+				+1.0
3,641,172	+				-2.7
3,641,172	+				+0.1
3,641,172	+				-0.4
3,641,180	-				+0.4
3,641,180	-				-0.6
3,641,180	-				-0.2
3,641,180	-				-0.3
3,641,180	-				+0.1
3,641,180	-				+0.5
3,641,182	+				-1.0
3,641,182	+				-1.8
3,641,190	+				+1.4
3,641,190	-				-0.7
3,641,190	-				-0.8
3,641,222	+		GFF3597	0.19	-0.4
3,641,240	-		GFF3597	0.25	+0.7
3,641,240	-		GFF3597	0.25	-0.7
3,641,250	+		GFF3597	0.28	-0.2
3,641,257	+		GFF3597	0.30	+0.0
3,641,257	+		GFF3597	0.30	-0.9
3,641,265	-		GFF3597	0.33	+1.2
3,641,270	-		GFF3597	0.35	-1.5
3,641,270	-		GFF3597	0.35	+1.2
3,641,270	-		GFF3597	0.35	-1.0
3,641,272	+		GFF3597	0.35	+0.4
3,641,272	+		GFF3597	0.35	-0.0
3,641,275	-		GFF3597	0.36	+0.7
3,641,275	-		GFF3597	0.36	-0.3
3,641,275	-		GFF3597	0.36	-1.0
3,641,325	+		GFF3597	0.53	-2.3
3,641,335	+		GFF3597	0.56	-0.3
3,641,335	+		GFF3597	0.56	-1.3
3,641,340	+		GFF3597	0.58	-0.9
3,641,343	-		GFF3597	0.59	-0.4
3,641,350	+		GFF3597	0.61	+0.3
3,641,355	+		GFF3597	0.63	-0.1
3,641,358	-		GFF3597	0.64	+0.4
3,641,358	-		GFF3597	0.64	-2.3
3,641,363	-		GFF3597	0.65	-1.9
3,641,370	+		GFF3597	0.68	+0.5
3,641,397	+		GFF3597	0.77	+1.0
3,641,399	+		GFF3597	0.77	-0.3
3,641,399	+		GFF3597	0.77	+0.6
3,641,399	+		GFF3597	0.77	-0.3
3,641,400	-		GFF3597	0.78	-0.3
3,641,400	-		GFF3597	0.78	-0.9
3,641,400	-		GFF3597	0.78	-1.5
3,641,405	-		GFF3597	0.79	+0.5
3,641,407	-		GFF3597	0.80	-1.0
3,641,407	-		GFF3597	0.80	-0.2
3,641,407	-		GFF3597	0.80	-0.5
3,641,407	-		GFF3597	0.80	+0.2
3,641,437	-				+1.2
3,641,440	+				+1.0
3,641,455	+				+1.1
3,641,457	-				-0.8
3,641,463	+				-0.1
3,641,497	+				-0.6
3,641,517	+				-0.7
3,641,526	+				-0.4
3,641,538	+				+1.0
3,641,539	+				+0.3
3,641,546	+				-0.4
3,641,546	+				-1.1
3,641,546	-				+1.5
3,641,547	-				-2.0
3,641,548	+				-0.4
3,641,565	-				+0.2
3,641,565	-				-0.1
3,641,565	-				+1.1
3,641,608	+				-0.6
3,641,621	+				+1.3
3,641,648	+				+0.9
3,641,656	-				-0.5
3,641,656	-				+1.1
3,641,656	-				-1.8
3,641,656	-				-1.8
3,641,664	-				-1.1
3,641,678	+				-2.3
3,641,729	-				-0.6
3,641,753	-				+1.8
3,641,759	-				-1.7
3,641,780	+				-1.9
3,641,788	-				+1.5
3,641,808	+				+0.2
3,641,816	-				-0.2
3,641,816	-				-0.4
3,641,820	+		GFF3598	0.10	-0.0
3,641,856	-		GFF3598	0.11	+1.0
3,641,913	+		GFF3598	0.14	+1.1
3,641,913	-		GFF3598	0.14	-1.6
3,641,916	+		GFF3598	0.14	+1.3
3,641,924	-		GFF3598	0.14	-0.0
3,641,932	-		GFF3598	0.14	-2.5
3,641,934	+		GFF3598	0.14	+0.5
3,641,942	-		GFF3598	0.15	-0.5
3,641,952	-		GFF3598	0.15	-1.3
3,641,977	+		GFF3598	0.16	-1.7
3,641,985	-		GFF3598	0.16	+0.0
3,642,004	+		GFF3598	0.17	+0.2
3,642,027	-		GFF3598	0.18	+0.4
3,642,066	-		GFF3598	0.19	-0.7
3,642,071	-		GFF3598	0.20	+1.6
3,642,085	+		GFF3598	0.20	-0.1
3,642,091	+		GFF3598	0.20	+0.4
3,642,099	-		GFF3598	0.21	+0.4
3,642,099	-		GFF3598	0.21	-0.7
3,642,124	+		GFF3598	0.21	+0.1
3,642,124	+		GFF3598	0.21	-0.1
3,642,129	+		GFF3598	0.22	-1.5
3,642,132	-		GFF3598	0.22	-0.9
3,642,132	-		GFF3598	0.22	+0.9
3,642,132	-		GFF3598	0.22	+0.3
3,642,132	-		GFF3598	0.22	+0.6
3,642,137	-		GFF3598	0.22	-0.1
3,642,137	-		GFF3598	0.22	-0.7
3,642,156	-		GFF3598	0.23	-0.3
3,642,186	+		GFF3598	0.24	+1.1
3,642,196	+		GFF3598	0.24	+1.4
3,642,211	+		GFF3598	0.25	-0.9
3,642,235	+		GFF3598	0.26	+0.6
3,642,242	+		GFF3598	0.26	+0.2
3,642,252	-		GFF3598	0.26	-0.4
3,642,265	+		GFF3598	0.27	+0.3
3,642,265	+		GFF3598	0.27	+0.2
3,642,266	-		GFF3598	0.27	-1.8
3,642,273	-		GFF3598	0.27	+1.6
3,642,277	+		GFF3598	0.27	+0.5
3,642,277	+		GFF3598	0.27	+0.3
3,642,286	+		GFF3598	0.28	-2.5
3,642,286	+		GFF3598	0.28	-0.7
3,642,286	-		GFF3598	0.28	-0.4
3,642,294	-		GFF3598	0.28	-1.0
3,642,303	+		GFF3598	0.28	+0.7
3,642,303	+		GFF3598	0.28	-1.3
3,642,303	+		GFF3598	0.28	-2.0
3,642,303	+		GFF3598	0.28	+0.3
3,642,303	+		GFF3598	0.28	+1.9
3,642,303	+		GFF3598	0.28	-0.4
3,642,303	+		GFF3598	0.28	-0.4
3,642,311	-		GFF3598	0.28	+0.2
3,642,311	-		GFF3598	0.28	-0.9
3,642,311	-		GFF3598	0.28	-2.2
3,642,313	+		GFF3598	0.29	+0.5
3,642,321	-		GFF3598	0.29	+0.7
3,642,328	-		GFF3598	0.29	-0.3
3,642,347	-		GFF3598	0.30	-1.2
3,642,360	-		GFF3598	0.30	+0.3
3,642,365	-		GFF3598	0.30	+0.9
3,642,372	+		GFF3598	0.31	+1.9
3,642,375	+		GFF3598	0.31	-1.8
3,642,383	+		GFF3598	0.31	-0.0
3,642,397	-		GFF3598	0.32	+0.2
3,642,415	+		GFF3598	0.32	+0.7
3,642,415	+		GFF3598	0.32	-0.4
3,642,423	-		GFF3598	0.33	-0.4
3,642,423	-		GFF3598	0.33	+0.1
3,642,447	+		GFF3598	0.34	+1.5
3,642,451	+		GFF3598	0.34	+0.4
3,642,452	+		GFF3598	0.34	-0.6
3,642,452	+		GFF3598	0.34	+0.9
3,642,455	-		GFF3598	0.34	+0.3
3,642,459	-		GFF3598	0.34	+0.4
3,642,460	-		GFF3598	0.34	+0.7
3,642,460	-		GFF3598	0.34	-0.8