Strain Fitness in Sphingobium sp. HT1-2 around GFF3569

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,612,628	-		GFF3568	0.74	+0.8
3,612,628	-		GFF3568	0.74	-1.0
3,612,628	-		GFF3568	0.74	-0.5
3,612,643	-		GFF3568	0.75	-1.5
3,612,644	+		GFF3568	0.75	+0.7
3,612,652	-		GFF3568	0.75	+0.8
3,612,654	+		GFF3568	0.75	+0.2
3,612,657	+		GFF3568	0.75	-0.4
3,612,659	+		GFF3568	0.75	+1.1
3,612,659	+		GFF3568	0.75	-1.9
3,612,662	-		GFF3568	0.75	-2.2
3,612,669	+		GFF3568	0.76	-0.2
3,612,669	+		GFF3568	0.76	+0.1
3,612,669	+		GFF3568	0.76	-0.6
3,612,669	+		GFF3568	0.76	-2.5
3,612,669	+		GFF3568	0.76	-0.3
3,612,677	-		GFF3568	0.76	-0.2
3,612,677	-		GFF3568	0.76	+1.1
3,612,677	-		GFF3568	0.76	+1.3
3,612,677	-		GFF3568	0.76	+0.5
3,612,677	-		GFF3568	0.76	+0.3
3,612,677	-		GFF3568	0.76	+0.3
3,612,677	-		GFF3568	0.76	+1.3
3,612,682	+		GFF3568	0.76	-1.7
3,612,682	+		GFF3568	0.76	+0.1
3,612,682	+		GFF3568	0.76	+3.2
3,612,682	+		GFF3568	0.76	+1.2
3,612,682	-		GFF3568	0.76	+0.6
3,612,700	-		GFF3568	0.76	+0.9
3,612,701	+		GFF3568	0.76	+0.1
3,612,706	+		GFF3568	0.77	-0.6
3,612,706	+		GFF3568	0.77	-0.3
3,612,706	+		GFF3568	0.77	+0.3
3,612,706	+		GFF3568	0.77	-2.0
3,612,706	+		GFF3568	0.77	-1.4
3,612,706	+		GFF3568	0.77	-0.3
3,612,706	+		GFF3568	0.77	-2.1
3,612,706	+		GFF3568	0.77	-0.3
3,612,706	+		GFF3568	0.77	-0.2
3,612,710	-		GFF3568	0.77	+0.4
3,612,710	-		GFF3568	0.77	+0.6
3,612,713	+		GFF3568	0.77	-1.8
3,612,714	-		GFF3568	0.77	-0.5
3,612,714	-		GFF3568	0.77	+1.0
3,612,714	-		GFF3568	0.77	-0.2
3,612,714	-		GFF3568	0.77	-2.0
3,612,714	-		GFF3568	0.77	-1.0
3,612,714	-		GFF3568	0.77	-0.9
3,612,714	-		GFF3568	0.77	-1.2
3,612,714	-		GFF3568	0.77	-0.7
3,612,714	-		GFF3568	0.77	-2.2
3,612,714	-		GFF3568	0.77	-1.5
3,612,714	-		GFF3568	0.77	+0.3
3,612,714	-		GFF3568	0.77	-0.0
3,612,714	-		GFF3568	0.77	+1.2
3,612,714	-		GFF3568	0.77	-1.0
3,612,719	+		GFF3568	0.77	+0.4
3,612,725	+		GFF3568	0.77	-0.5
3,612,749	-		GFF3568	0.78	-0.4
3,612,751	+		GFF3568	0.78	-0.1
3,612,751	+		GFF3568	0.78	-1.4
3,612,751	+		GFF3568	0.78	-1.0
3,612,751	+		GFF3568	0.78	+0.3
3,612,751	+		GFF3568	0.78	+0.1
3,612,759	-		GFF3568	0.78	+0.5
3,612,759	-		GFF3568	0.78	+0.4
3,612,759	-		GFF3568	0.78	-2.0
3,612,759	-		GFF3568	0.78	-0.1
3,612,759	-		GFF3568	0.78	-1.1
3,612,759	-		GFF3568	0.78	+0.4
3,612,759	-		GFF3568	0.78	-2.6
3,612,766	-		GFF3568	0.78	+0.4
3,612,766	-		GFF3568	0.78	-0.1
3,612,771	-		GFF3568	0.78	-0.7
3,612,787	-		GFF3568	0.79	-1.2
3,612,798	-		GFF3568	0.79	+1.2
3,612,826	-		GFF3568	0.80	+0.1
3,612,826	-		GFF3568	0.80	-0.0
3,612,863	-		GFF3568	0.81	-2.3
3,612,863	-		GFF3568	0.81	-1.5
3,612,863	-		GFF3568	0.81	+0.1
3,612,870	+		GFF3568	0.81	+0.2
3,612,876	-		GFF3568	0.81	-1.4
3,612,888	-		GFF3568	0.81	+0.1
3,612,888	-		GFF3568	0.81	-1.4
3,612,888	-		GFF3568	0.81	+1.5
3,612,888	-		GFF3568	0.81	-0.6
3,612,983	-		GFF3568	0.84	-1.1
3,613,037	+		GFF3568	0.85	+0.5
3,613,037	+		GFF3568	0.85	-1.0
3,613,070	-		GFF3568	0.86	-0.2
3,613,086	+		GFF3568	0.86	+2.4
3,613,086	+		GFF3568	0.86	+0.6
3,613,094	-		GFF3568	0.87	-0.7
3,613,106	-		GFF3568	0.87	-1.2
3,613,113	+		GFF3568	0.87	-1.2
3,613,113	+		GFF3568	0.87	-0.6
3,613,130	+		GFF3568	0.88	+0.1
3,613,138	-		GFF3568	0.88	+0.3
3,613,175	+		GFF3568	0.89	-0.6
3,613,175	+		GFF3568	0.89	-0.5
3,613,214	-		GFF3568	0.90	+0.0
3,613,221	+				+0.3
3,613,226	-				+0.1
3,613,308	-				-0.6
3,613,348	-				+0.3
3,613,387	+				-0.2
3,613,390	+				-1.8
3,613,396	+				-0.2
3,613,397	+				+0.6
3,613,405	-				-0.2
3,613,441	-				+0.3
3,613,447	+				+1.1
3,613,461	+				-1.5
3,613,475	+				+0.0
3,613,475	+				+1.8
3,613,475	+				+0.3
3,613,478	-				+0.6
3,613,483	-				+0.3
3,613,483	-				+1.6
3,613,494	+				+1.0
3,613,546	-				+0.3
3,613,560	+				+1.0
3,613,574	+				+0.4
3,613,598	+				+0.6
3,613,634	-				-0.0
3,613,644	+				-0.7
3,613,767	+		GFF3569	0.40	-2.1
3,613,790	-		GFF3569	0.47	+1.7
3,613,792	+		GFF3569	0.47	+0.5
3,613,792	+		GFF3569	0.47	+0.4
3,613,792	+		GFF3569	0.47	-0.0
3,613,792	+		GFF3569	0.47	-1.5
3,613,792	+		GFF3569	0.47	-2.3
3,613,792	+		GFF3569	0.47	-1.5
3,613,800	-		GFF3569	0.49	+0.7
3,613,839	+		GFF3569	0.60	+0.3
3,613,839	+		GFF3569	0.60	-0.4
3,613,839	+		GFF3569	0.60	-2.6
3,613,847	-		GFF3569	0.63	-0.7
3,613,857	-		GFF3569	0.66	-2.0
3,613,891	+		GFF3569	0.75	-2.0
3,613,903	+		GFF3569	0.79	-1.0
3,613,903	+		GFF3569	0.79	-0.4
3,613,911	-		GFF3569	0.81	-1.2
3,613,945	-				+1.9
3,613,945	-				+0.4
3,613,945	-				+1.4
3,613,967	-				+0.4
3,613,974	-				-0.9
3,613,982	-				-0.9
3,613,984	+				+2.1
3,613,992	-				-1.0
3,613,998	+				-0.6
3,614,023	+				-0.4
3,614,031	+				+2.7
3,614,039	-				+0.6
3,614,061	-		GFF3570	0.11	+0.3
3,614,061	-		GFF3570	0.11	+1.2
3,614,070	+		GFF3570	0.12	-0.9
3,614,070	+		GFF3570	0.12	-1.3
3,614,080	+		GFF3570	0.13	-0.2
3,614,085	+		GFF3570	0.14	-2.8
3,614,087	-		GFF3570	0.14	-2.4
3,614,090	+		GFF3570	0.15	+0.5
3,614,090	+		GFF3570	0.15	-1.9
3,614,090	+		GFF3570	0.15	-0.3
3,614,090	+		GFF3570	0.15	-0.6
3,614,090	+		GFF3570	0.15	-0.1
3,614,090	+		GFF3570	0.15	-0.7
3,614,090	+		GFF3570	0.15	-0.2
3,614,095	+		GFF3570	0.15	+0.8
3,614,095	+		GFF3570	0.15	+1.5
3,614,095	+		GFF3570	0.15	-1.5
3,614,097	+		GFF3570	0.16	-0.2
3,614,098	-		GFF3570	0.16	+0.5
3,614,098	-		GFF3570	0.16	+1.0
3,614,098	-		GFF3570	0.16	+0.2
3,614,098	-		GFF3570	0.16	+0.7
3,614,098	-		GFF3570	0.16	+0.4
3,614,098	-		GFF3570	0.16	-0.8
3,614,098	-		GFF3570	0.16	+0.8
3,614,098	-		GFF3570	0.16	+0.5
3,614,098	-		GFF3570	0.16	-0.3
3,614,105	-		GFF3570	0.17	+0.5
3,614,105	-		GFF3570	0.17	+0.7
3,614,107	+		GFF3570	0.17	-0.5
3,614,107	+		GFF3570	0.17	+0.6
3,614,119	+		GFF3570	0.18	+0.9
3,614,142	-		GFF3570	0.21	-0.8
3,614,150	-		GFF3570	0.22	-0.8
3,614,155	-		GFF3570	0.23	+0.7
3,614,155	-		GFF3570	0.23	+0.6
3,614,162	+		GFF3570	0.24	-0.8
3,614,162	+		GFF3570	0.24	-1.3
3,614,162	+		GFF3570	0.24	-0.2
3,614,162	+		GFF3570	0.24	+0.5
3,614,162	+		GFF3570	0.24	-1.3
3,614,165	-		GFF3570	0.24	-1.5
3,614,165	-		GFF3570	0.24	+0.3
3,614,177	+		GFF3570	0.26	-1.2
3,614,179	+		GFF3570	0.26	-0.4
3,614,188	+		GFF3570	0.27	+0.9
3,614,198	+		GFF3570	0.29	+0.8
3,614,201	-		GFF3570	0.29	-0.2
3,614,206	-		GFF3570	0.30	-1.7
3,614,211	-		GFF3570	0.30	+0.8
3,614,216	-		GFF3570	0.31	-1.2
3,614,218	-		GFF3570	0.31	+0.6
3,614,225	+		GFF3570	0.32	-1.1
3,614,230	+		GFF3570	0.33	-1.5
3,614,231	-		GFF3570	0.33	-0.4
3,614,238	-		GFF3570	0.34	-1.1
3,614,244	-		GFF3570	0.35	+0.2
3,614,252	-		GFF3570	0.36	+0.4
3,614,252	-		GFF3570	0.36	+0.7
3,614,268	-		GFF3570	0.38	-2.0
3,614,287	+		GFF3570	0.40	-0.5
3,614,301	+		GFF3570	0.42	+0.5
3,614,309	+		GFF3570	0.43	-0.4
3,614,311	-		GFF3570	0.44	+1.2
3,614,322	+		GFF3570	0.45	-0.2
3,614,324	-		GFF3570	0.45	-0.5
3,614,324	-		GFF3570	0.45	-1.6
3,614,344	+		GFF3570	0.48	-0.8
3,614,344	+		GFF3570	0.48	+0.4
3,614,346	-		GFF3570	0.48	-0.6
3,614,349	+		GFF3570	0.48	-1.8
3,614,349	+		GFF3570	0.48	-0.6
3,614,352	-		GFF3570	0.49	+0.8
3,614,352	-		GFF3570	0.49	-0.4
3,614,357	-		GFF3570	0.50	+0.7
3,614,357	-		GFF3570	0.50	+0.2
3,614,362	-		GFF3570	0.50	+0.6
3,614,365	+		GFF3570	0.51	-1.6
3,614,373	-		GFF3570	0.52	-2.1
3,614,418	+		GFF3570	0.58	+0.7
3,614,423	+		GFF3570	0.58	-0.4
3,614,431	-		GFF3570	0.59	+0.0
3,614,440	+		GFF3570	0.60	-0.9
3,614,448	-		GFF3570	0.61	+1.2
3,614,448	-		GFF3570	0.61	-1.7
3,614,500	-		GFF3570	0.68	+1.1
3,614,502	-		GFF3570	0.68	-1.7
3,614,510	+		GFF3570	0.70	-0.8
3,614,539	-		GFF3570	0.73	+1.2
3,614,656	-		GFF3570	0.89	+0.5
3,614,661	-		GFF3570	0.89	-0.6
3,614,707	-				+0.8
3,614,789	-				-0.7
3,614,814	-				+1.7
3,614,814	-				-0.1
3,614,819	-				+1.0
3,614,839	-				+0.6
3,614,906	+				-0.9
3,614,906	+				-0.1
3,614,917	+				-1.9
3,614,924	+				-1.8
3,614,932	-				-0.8
3,614,932	-				+1.1
3,614,944	+				-0.9
3,614,958	+				+0.4
3,614,965	-				-1.2
3,614,966	-				-3.2