Strain Fitness in Sphingobium sp. HT1-2 around GFF3566

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,607,943	+				+0.9
3,607,946	-				+0.3
3,607,951	-				-0.3
3,607,951	-				-0.6
3,607,951	-				-2.4
3,607,956	-				+0.7
3,607,963	-				-1.9
3,607,965	+				-1.3
3,607,967	+				+0.1
3,607,969	-				-1.3
3,607,973	-				-0.3
3,607,973	-				-0.1
3,607,999	+				-0.0
3,608,021	+		GFF3565	0.12	+0.2
3,608,021	+		GFF3565	0.12	+1.6
3,608,031	+		GFF3565	0.13	-1.4
3,608,031	+		GFF3565	0.13	-0.5
3,608,031	+		GFF3565	0.13	-0.4
3,608,031	+		GFF3565	0.13	-0.4
3,608,039	-		GFF3565	0.14	-0.3
3,608,039	-		GFF3565	0.14	+0.1
3,608,039	-		GFF3565	0.14	+0.3
3,608,039	-		GFF3565	0.14	-1.1
3,608,039	-		GFF3565	0.14	+0.8
3,608,043	+		GFF3565	0.14	-0.1
3,608,054	-		GFF3565	0.15	+0.5
3,608,062	+		GFF3565	0.16	-0.1
3,608,062	+		GFF3565	0.16	-0.6
3,608,062	+		GFF3565	0.16	-0.7
3,608,064	-		GFF3565	0.17	-0.3
3,608,065	+		GFF3565	0.17	-1.3
3,608,065	+		GFF3565	0.17	-0.4
3,608,094	+		GFF3565	0.20	-1.0
3,608,102	-		GFF3565	0.21	-1.3
3,608,104	+		GFF3565	0.21	-0.8
3,608,106	+		GFF3565	0.21	-0.1
3,608,106	+		GFF3565	0.21	-0.1
3,608,111	+		GFF3565	0.22	-1.5
3,608,111	+		GFF3565	0.22	-0.3
3,608,111	+		GFF3565	0.22	+0.5
3,608,116	+		GFF3565	0.22	-2.0
3,608,116	+		GFF3565	0.22	-0.7
3,608,119	-		GFF3565	0.23	-0.9
3,608,119	-		GFF3565	0.23	-0.6
3,608,119	-		GFF3565	0.23	-0.9
3,608,124	-		GFF3565	0.23	+1.0
3,608,132	+		GFF3565	0.24	+1.3
3,608,132	-		GFF3565	0.24	-1.9
3,608,167	-		GFF3565	0.28	+0.2
3,608,177	-		GFF3565	0.29	-0.8
3,608,182	-		GFF3565	0.30	-0.3
3,608,186	+		GFF3565	0.30	-1.9
3,608,186	+		GFF3565	0.30	-0.5
3,608,186	+		GFF3565	0.30	-0.3
3,608,187	-		GFF3565	0.30	+0.6
3,608,187	-		GFF3565	0.30	+0.6
3,608,192	-		GFF3565	0.31	-1.1
3,608,192	-		GFF3565	0.31	-1.9
3,608,194	-		GFF3565	0.31	+0.5
3,608,226	+		GFF3565	0.34	+0.4
3,608,226	+		GFF3565	0.34	-0.8
3,608,226	+		GFF3565	0.34	+1.3
3,608,226	+		GFF3565	0.34	-0.0
3,608,234	-		GFF3565	0.35	+0.7
3,608,234	-		GFF3565	0.35	-0.5
3,608,234	-		GFF3565	0.35	-2.5
3,608,234	-		GFF3565	0.35	+0.5
3,608,234	-		GFF3565	0.35	-0.7
3,608,234	-		GFF3565	0.35	-0.9
3,608,234	-		GFF3565	0.35	-0.0
3,608,244	-		GFF3565	0.36	+0.4
3,608,248	+		GFF3565	0.37	+0.7
3,608,248	+		GFF3565	0.37	-2.7
3,608,256	-		GFF3565	0.38	-0.4
3,608,256	-		GFF3565	0.38	-2.0
3,608,256	-		GFF3565	0.38	-1.9
3,608,256	-		GFF3565	0.38	+0.4
3,608,256	-		GFF3565	0.38	+0.9
3,608,256	-		GFF3565	0.38	-1.5
3,608,270	+		GFF3565	0.39	-0.6
3,608,270	+		GFF3565	0.39	-1.1
3,608,270	+		GFF3565	0.39	+0.8
3,608,278	-		GFF3565	0.40	+0.6
3,608,286	+		GFF3565	0.41	-2.1
3,608,286	+		GFF3565	0.41	+0.8
3,608,359	+		GFF3565	0.49	-2.1
3,608,359	+		GFF3565	0.49	-0.1
3,608,359	+		GFF3565	0.49	-0.7
3,608,367	-		GFF3565	0.50	+0.1
3,608,367	-		GFF3565	0.50	-0.9
3,608,367	-		GFF3565	0.50	-0.1
3,608,371	+		GFF3565	0.50	+1.6
3,608,406	+		GFF3565	0.54	-1.2
3,608,411	+		GFF3565	0.55	-1.0
3,608,416	-		GFF3565	0.55	-0.5
3,608,442	+		GFF3565	0.58	+1.1
3,608,447	+		GFF3565	0.59	+0.7
3,608,447	+		GFF3565	0.59	+1.2
3,608,450	-		GFF3565	0.59	-0.7
3,608,450	-		GFF3565	0.59	+0.9
3,608,457	-		GFF3565	0.60	-1.3
3,608,463	+		GFF3565	0.61	+0.9
3,608,463	+		GFF3565	0.61	-1.6
3,608,463	+		GFF3565	0.61	-1.4
3,608,463	+		GFF3565	0.61	-1.6
3,608,463	+		GFF3565	0.61	-1.5
3,608,463	+		GFF3565	0.61	+1.7
3,608,463	+		GFF3565	0.61	-0.4
3,608,463	+		GFF3565	0.61	-0.3
3,608,463	+		GFF3565	0.61	+0.9
3,608,464	+		GFF3565	0.61	-1.5
3,608,465	-		GFF3565	0.61	-1.9
3,608,468	+		GFF3565	0.61	-1.4
3,608,470	+		GFF3565	0.61	+0.2
3,608,471	-		GFF3565	0.61	-0.7
3,608,471	-		GFF3565	0.61	+0.7
3,608,471	-		GFF3565	0.61	-1.7
3,608,471	-		GFF3565	0.61	-1.3
3,608,471	-		GFF3565	0.61	-1.3
3,608,471	-		GFF3565	0.61	-0.1
3,608,471	-		GFF3565	0.61	+0.2
3,608,476	-		GFF3565	0.62	+0.2
3,608,484	+		GFF3565	0.63	+0.5
3,608,487	-		GFF3565	0.63	-2.4
3,608,502	+		GFF3565	0.65	+0.5
3,608,502	+		GFF3565	0.65	-0.3
3,608,502	+		GFF3565	0.65	-0.3
3,608,502	+		GFF3565	0.65	+0.2
3,608,502	+		GFF3565	0.65	-0.7
3,608,507	+		GFF3565	0.65	-0.0
3,608,507	+		GFF3565	0.65	-1.6
3,608,507	+		GFF3565	0.65	-0.3
3,608,507	+		GFF3565	0.65	+0.2
3,608,510	-		GFF3565	0.66	+0.4
3,608,510	-		GFF3565	0.66	-0.1
3,608,515	-		GFF3565	0.66	+1.2
3,608,515	-		GFF3565	0.66	-0.7
3,608,523	-		GFF3565	0.67	-0.8
3,608,526	+		GFF3565	0.68	+1.3
3,608,532	+		GFF3565	0.68	+1.1
3,608,534	-		GFF3565	0.68	-0.0
3,608,534	-		GFF3565	0.68	+0.6
3,608,534	-		GFF3565	0.68	-0.1
3,608,540	-		GFF3565	0.69	-0.1
3,608,542	+		GFF3565	0.69	-0.3
3,608,544	+		GFF3565	0.70	+1.4
3,608,544	+		GFF3565	0.70	-0.4
3,608,544	+		GFF3565	0.70	-1.1
3,608,547	+		GFF3565	0.70	+1.1
3,608,550	-		GFF3565	0.70	+0.5
3,608,550	-		GFF3565	0.70	+0.1
3,608,550	-		GFF3565	0.70	+1.5
3,608,550	-		GFF3565	0.70	-1.1
3,608,550	-		GFF3565	0.70	-0.2
3,608,552	-		GFF3565	0.70	+0.7
3,608,552	-		GFF3565	0.70	-0.1
3,608,552	-		GFF3565	0.70	+1.3
3,608,552	-		GFF3565	0.70	-0.6
3,608,552	-		GFF3565	0.70	-0.3
3,608,552	-		GFF3565	0.70	+0.2
3,608,552	-		GFF3565	0.70	-2.1
3,608,552	-		GFF3565	0.70	+0.4
3,608,571	+		GFF3565	0.73	+0.7
3,608,571	+		GFF3565	0.73	-1.7
3,608,571	+		GFF3565	0.73	-0.0
3,608,571	+		GFF3565	0.73	+0.3
3,608,579	-		GFF3565	0.73	+0.1
3,608,581	+		GFF3565	0.74	+0.4
3,608,581	+		GFF3565	0.74	+0.4
3,608,583	+		GFF3565	0.74	+2.2
3,608,588	+		GFF3565	0.74	-1.5
3,608,588	+		GFF3565	0.74	-1.1
3,608,588	+		GFF3565	0.74	+0.2
3,608,588	+		GFF3565	0.74	+0.2
3,608,591	-		GFF3565	0.75	+0.2
3,608,596	-		GFF3565	0.75	-0.1
3,608,596	-		GFF3565	0.75	+0.1
3,608,596	-		GFF3565	0.75	+0.6
3,608,596	-		GFF3565	0.75	-1.8
3,608,596	-		GFF3565	0.75	-0.8
3,608,601	+		GFF3565	0.76	-1.6
3,608,601	+		GFF3565	0.76	+1.0
3,608,608	+		GFF3565	0.77	+0.1
3,608,616	-		GFF3565	0.77	+0.1
3,608,634	+		GFF3565	0.79	-1.8
3,608,634	+		GFF3565	0.79	+0.5
3,608,634	+		GFF3565	0.79	+0.3
3,608,634	+		GFF3565	0.79	+1.3
3,608,634	+		GFF3565	0.79	-1.4
3,608,639	+		GFF3565	0.80	+0.3
3,608,639	+		GFF3565	0.80	-0.5
3,608,639	+		GFF3565	0.80	-0.2
3,608,639	+		GFF3565	0.80	-0.8
3,608,639	+		GFF3565	0.80	+0.2
3,608,639	+		GFF3565	0.80	-0.1
3,608,642	-		GFF3565	0.80	-0.0
3,608,642	-		GFF3565	0.80	+0.7
3,608,647	+		GFF3565	0.81	+0.4
3,608,647	-		GFF3565	0.81	+0.8
3,608,647	-		GFF3565	0.81	-0.4
3,608,647	-		GFF3565	0.81	+0.7
3,608,647	-		GFF3565	0.81	+1.1
3,608,647	-		GFF3565	0.81	-1.5
3,608,647	-		GFF3565	0.81	+0.7
3,608,647	-		GFF3565	0.81	+0.3
3,608,647	-		GFF3565	0.81	-1.0
3,608,647	-		GFF3565	0.81	-1.8
3,608,668	-		GFF3565	0.83	-1.2
3,608,673	-		GFF3565	0.84	-1.0
3,608,686	+		GFF3565	0.85	-1.1
3,608,687	-		GFF3565	0.85	-1.0
3,608,693	+		GFF3565	0.86	-0.6
3,608,698	+		GFF3565	0.87	+0.1
3,608,698	+		GFF3565	0.87	-0.8
3,608,703	-		GFF3565	0.87	+0.1
3,608,715	-		GFF3565	0.88	-3.1
3,608,719	-		GFF3565	0.89	-2.1
3,608,753	-				+0.1
3,608,761	+				+0.3
3,608,762	+				-0.3
3,608,796	+				-1.0
3,608,813	+				+1.5
3,608,820	+				-0.7
3,608,826	+				-0.2
3,608,828	+				-2.1
3,608,828	+				+0.1
3,608,828	-				+1.6
3,608,830	-				-1.8
3,608,842	+				-2.8
3,608,850	-				-0.0
3,608,850	-				-1.4
3,608,850	-				+1.2
3,608,850	-				-0.0
3,608,850	-				-0.1
3,608,850	-				-2.6
3,608,862	+				+1.2
3,608,862	+				-1.8
3,608,862	+				-0.5
3,608,870	-				+0.1
3,608,870	-				+0.4
3,608,870	-				-1.4
3,608,870	-				-1.5
3,608,870	-				-0.1
3,608,875	+				-1.7
3,608,875	+				-0.7
3,608,875	+				-0.5
3,608,875	+				+1.0
3,608,875	+				-0.6
3,608,883	-				-1.6
3,608,883	-				-1.1
3,608,883	-				-1.4
3,608,883	-				+1.7
3,608,923	+				-0.1
3,608,932	-				-0.1
3,608,934	+				-0.3
3,608,942	-				+0.4
3,608,964	-				+1.1
3,609,007	-		GFF3566	0.14	-0.5
3,609,020	+		GFF3566	0.17	+1.1
3,609,021	+		GFF3566	0.17	-1.1
3,609,021	+		GFF3566	0.17	-0.9
3,609,029	-		GFF3566	0.19	-2.1
3,609,029	-		GFF3566	0.19	-0.1
3,609,045	+		GFF3566	0.22	+0.3
3,609,048	-		GFF3566	0.23	-0.4
3,609,050	+		GFF3566	0.23	-1.7
3,609,053	-		GFF3566	0.24	-1.7
3,609,053	-		GFF3566	0.24	-0.7
3,609,055	+		GFF3566	0.25	+0.5
3,609,055	+		GFF3566	0.25	-1.4
3,609,055	+		GFF3566	0.25	-0.3
3,609,055	+		GFF3566	0.25	-0.6
3,609,055	+		GFF3566	0.25	-0.4
3,609,055	+		GFF3566	0.25	-0.4
3,609,055	+		GFF3566	0.25	-0.3
3,609,055	+		GFF3566	0.25	-0.8
3,609,055	+		GFF3566	0.25	+2.1
3,609,055	+		GFF3566	0.25	+0.4
3,609,055	+		GFF3566	0.25	-1.1
3,609,055	+		GFF3566	0.25	-2.4
3,609,055	+		GFF3566	0.25	-1.3
3,609,055	+		GFF3566	0.25	-1.3
3,609,055	+		GFF3566	0.25	-0.6
3,609,055	+		GFF3566	0.25	+0.1
3,609,055	+		GFF3566	0.25	+0.7
3,609,055	+		GFF3566	0.25	-1.3
3,609,055	+		GFF3566	0.25	-0.7
3,609,058	-		GFF3566	0.25	+1.2
3,609,060	+		GFF3566	0.26	-0.1
3,609,063	-		GFF3566	0.26	-0.1
3,609,063	-		GFF3566	0.26	-1.3
3,609,063	-		GFF3566	0.26	+0.1
3,609,063	-		GFF3566	0.26	+0.4
3,609,063	-		GFF3566	0.26	-1.1
3,609,063	-		GFF3566	0.26	-2.3
3,609,063	-		GFF3566	0.26	+0.1
3,609,063	-		GFF3566	0.26	-1.5
3,609,065	+		GFF3566	0.27	-1.4
3,609,065	+		GFF3566	0.27	-2.3
3,609,065	+		GFF3566	0.27	-2.9
3,609,065	+		GFF3566	0.27	+1.2
3,609,065	+		GFF3566	0.27	-0.7
3,609,065	+		GFF3566	0.27	+0.2
3,609,068	-		GFF3566	0.27	-1.7
3,609,073	-		GFF3566	0.29	-2.7
3,609,073	-		GFF3566	0.29	+0.1
3,609,073	-		GFF3566	0.29	-1.1
3,609,131	-		GFF3566	0.41	+0.2
3,609,149	+		GFF3566	0.45	-2.1
3,609,149	+		GFF3566	0.45	-1.1
3,609,157	-		GFF3566	0.47	-0.2
3,609,157	-		GFF3566	0.47	-0.7
3,609,178	+		GFF3566	0.52	-1.6
3,609,186	-		GFF3566	0.53	-1.3
3,609,195	+		GFF3566	0.55	+0.9
3,609,203	-		GFF3566	0.57	-0.5
3,609,322	+		GFF3566	0.83	-0.0
3,609,322	+		GFF3566	0.83	+0.9
3,609,330	-		GFF3566	0.85	-2.3
3,609,330	-		GFF3566	0.85	-2.3
3,609,343	+		GFF3566	0.88	-0.0
3,609,343	+		GFF3566	0.88	-1.4
3,609,409	+				-1.3
3,609,412	-				-0.4
3,609,415	+				-1.0
3,609,417	-				-0.5
3,609,417	-				+0.5
3,609,422	+				-0.4
3,609,422	+				-2.1
3,609,439	+				+0.6
3,609,447	-				-0.6
3,609,447	-				-0.4
3,609,450	-				-1.1
3,609,510	+				-0.3
3,609,510	+				-1.6
3,609,515	+				-0.7
3,609,522	+				-0.1
3,609,525	-				+0.7
3,609,525	-				+1.7
3,609,530	-				+1.0
3,609,531	+				-1.9
3,609,539	-				+0.6
3,609,539	-				+0.1
3,609,558	-				+0.3
3,609,567	-				+1.3
3,609,569	-				+0.3
3,609,575	-				+0.6
3,609,576	+				-1.1
3,609,577	+				-1.3
3,609,577	-				+0.7
3,609,577	-				-0.1
3,609,577	-				+0.8
3,609,585	-				-0.8
3,609,591	+				+0.6
3,609,591	-				+0.8
3,609,628	+		GFF3567	0.17	+0.3
3,609,628	+		GFF3567	0.17	-0.3
3,609,628	-		GFF3567	0.17	-0.1
3,609,629	+		GFF3567	0.18	-0.0
3,609,629	+		GFF3567	0.18	-1.9
3,609,629	+		GFF3567	0.18	-0.6
3,609,629	+		GFF3567	0.18	+0.4
3,609,637	-		GFF3567	0.24	+0.5
3,609,637	-		GFF3567	0.24	-1.1
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