Strain Fitness in Sphingobium sp. HT1-2 around GFF3484

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,521,119	+		GFF3483	0.41	+0.1
3,521,146	+		GFF3483	0.43	+0.4
3,521,146	+		GFF3483	0.43	+1.4
3,521,153	-		GFF3483	0.43	+0.1
3,521,153	-		GFF3483	0.43	-1.6
3,521,154	-		GFF3483	0.43	+0.9
3,521,154	-		GFF3483	0.43	-0.6
3,521,171	+		GFF3483	0.44	-0.4
3,521,183	-		GFF3483	0.45	-0.4
3,521,186	+		GFF3483	0.45	-1.2
3,521,203	-		GFF3483	0.47	-0.4
3,521,225	+		GFF3483	0.48	+0.8
3,521,225	+		GFF3483	0.48	-1.2
3,521,225	+		GFF3483	0.48	+0.7
3,521,225	+		GFF3483	0.48	-0.3
3,521,226	-		GFF3483	0.48	-1.0
3,521,231	-		GFF3483	0.48	-0.5
3,521,233	-		GFF3483	0.49	+0.8
3,521,235	-		GFF3483	0.49	+1.0
3,521,243	+		GFF3483	0.49	-0.3
3,521,243	+		GFF3483	0.49	-0.0
3,521,244	+		GFF3483	0.49	+0.1
3,521,252	-		GFF3483	0.50	+0.6
3,521,252	-		GFF3483	0.50	+2.4
3,521,263	+		GFF3483	0.51	+1.2
3,521,271	-		GFF3483	0.51	-0.6
3,521,276	+		GFF3483	0.52	-0.9
3,521,278	+		GFF3483	0.52	-0.8
3,521,286	+		GFF3483	0.52	+0.1
3,521,286	-		GFF3483	0.52	-0.2
3,521,288	+		GFF3483	0.52	-1.6
3,521,294	-		GFF3483	0.53	+0.6
3,521,295	+		GFF3483	0.53	-1.1
3,521,295	+		GFF3483	0.53	+1.6
3,521,303	-		GFF3483	0.53	-2.2
3,521,303	-		GFF3483	0.53	+0.8
3,521,303	-		GFF3483	0.53	-0.8
3,521,304	-		GFF3483	0.53	-1.5
3,521,314	+		GFF3483	0.54	+1.1
3,521,318	+		GFF3483	0.54	+0.4
3,521,318	+		GFF3483	0.54	-0.5
3,521,318	+		GFF3483	0.54	-1.6
3,521,318	+		GFF3483	0.54	-0.4
3,521,319	+		GFF3483	0.55	-0.7
3,521,319	+		GFF3483	0.55	-0.9
3,521,319	+		GFF3483	0.55	-0.0
3,521,324	+		GFF3483	0.55	-1.7
3,521,325	+		GFF3483	0.55	-0.4
3,521,325	+		GFF3483	0.55	+0.7
3,521,325	+		GFF3483	0.55	+0.8
3,521,325	+		GFF3483	0.55	-0.8
3,521,327	-		GFF3483	0.55	-0.3
3,521,327	-		GFF3483	0.55	+0.5
3,521,330	+		GFF3483	0.55	-0.2
3,521,330	+		GFF3483	0.55	-3.2
3,521,332	-		GFF3483	0.55	-1.9
3,521,333	-		GFF3483	0.55	-0.7
3,521,333	-		GFF3483	0.55	+0.5
3,521,333	-		GFF3483	0.55	+0.8
3,521,333	-		GFF3483	0.55	+1.2
3,521,333	-		GFF3483	0.55	-0.1
3,521,333	-		GFF3483	0.55	+0.1
3,521,353	+		GFF3483	0.57	+0.2
3,521,361	-		GFF3483	0.57	+0.6
3,521,363	+		GFF3483	0.58	-1.3
3,521,363	+		GFF3483	0.58	+0.5
3,521,363	+		GFF3483	0.58	-1.1
3,521,363	+		GFF3483	0.58	+2.8
3,521,371	+		GFF3483	0.58	-0.8
3,521,371	-		GFF3483	0.58	-1.6
3,521,371	-		GFF3483	0.58	-0.0
3,521,371	-		GFF3483	0.58	-2.7
3,521,382	+		GFF3483	0.59	-0.3
3,521,382	+		GFF3483	0.59	-0.9
3,521,382	+		GFF3483	0.59	-0.3
3,521,382	+		GFF3483	0.59	-0.2
3,521,382	+		GFF3483	0.59	+0.9
3,521,382	+		GFF3483	0.59	-2.0
3,521,382	+		GFF3483	0.59	+0.0
3,521,382	+		GFF3483	0.59	+0.8
3,521,387	+		GFF3483	0.59	+0.1
3,521,387	+		GFF3483	0.59	+0.8
3,521,390	-		GFF3483	0.59	-0.4
3,521,390	-		GFF3483	0.59	-0.3
3,521,390	-		GFF3483	0.59	-0.2
3,521,390	-		GFF3483	0.59	+0.8
3,521,397	+		GFF3483	0.60	-0.6
3,521,397	+		GFF3483	0.60	+1.6
3,521,400	-		GFF3483	0.60	-2.1
3,521,400	-		GFF3483	0.60	+0.2
3,521,400	-		GFF3483	0.60	+1.1
3,521,400	-		GFF3483	0.60	-0.4
3,521,400	-		GFF3483	0.60	+1.7
3,521,400	-		GFF3483	0.60	-0.1
3,521,405	-		GFF3483	0.60	+0.1
3,521,421	+		GFF3483	0.62	+0.6
3,521,429	-		GFF3483	0.62	-0.4
3,521,429	-		GFF3483	0.62	-0.1
3,521,429	-		GFF3483	0.62	+0.9
3,521,440	+		GFF3483	0.63	+0.6
3,521,440	+		GFF3483	0.63	-1.5
3,521,440	+		GFF3483	0.63	-2.2
3,521,440	+		GFF3483	0.63	+0.6
3,521,440	+		GFF3483	0.63	+0.8
3,521,447	+		GFF3483	0.63	-1.7
3,521,448	-		GFF3483	0.63	-1.6
3,521,448	-		GFF3483	0.63	-0.2
3,521,448	-		GFF3483	0.63	+0.8
3,521,448	-		GFF3483	0.63	+0.6
3,521,448	-		GFF3483	0.63	+0.4
3,521,448	-		GFF3483	0.63	+0.6
3,521,457	+		GFF3483	0.64	-0.1
3,521,457	+		GFF3483	0.64	+0.0
3,521,457	+		GFF3483	0.64	+0.4
3,521,498	-		GFF3483	0.67	-0.2
3,521,509	+		GFF3483	0.68	+0.4
3,521,509	+		GFF3483	0.68	+0.5
3,521,516	+		GFF3483	0.68	-0.7
3,521,529	-		GFF3483	0.69	-0.2
3,521,571	+		GFF3483	0.72	+1.4
3,521,571	-		GFF3483	0.72	-0.0
3,521,579	-		GFF3483	0.72	+0.3
3,521,603	+		GFF3483	0.74	-0.5
3,521,606	-		GFF3483	0.74	-1.0
3,521,606	-		GFF3483	0.74	-1.4
3,521,616	-		GFF3483	0.75	-3.1
3,521,626	-		GFF3483	0.76	-0.5
3,521,659	-		GFF3483	0.78	+1.1
3,521,659	-		GFF3483	0.78	+0.5
3,521,672	+		GFF3483	0.79	-0.9
3,521,679	+		GFF3483	0.79	-3.2
3,521,687	-		GFF3483	0.80	-0.2
3,521,695	-		GFF3483	0.80	+0.8
3,521,719	-		GFF3483	0.82	+0.0
3,521,724	+		GFF3483	0.82	+0.6
3,521,734	-		GFF3483	0.83	-0.5
3,521,745	+		GFF3483	0.84	-1.5
3,521,749	+		GFF3483	0.84	+1.1
3,521,752	-		GFF3483	0.84	-0.5
3,521,757	+		GFF3483	0.85	-1.4
3,521,757	-		GFF3483	0.85	+0.3
3,521,767	+		GFF3483	0.85	-0.3
3,521,775	-		GFF3483	0.86	-1.6
3,521,775	-		GFF3483	0.86	-0.0
3,521,775	-		GFF3483	0.86	-0.4
3,521,775	-		GFF3483	0.86	+1.1
3,521,775	-		GFF3483	0.86	+0.4
3,521,776	-		GFF3483	0.86	-1.2
3,521,777	+		GFF3483	0.86	-0.9
3,521,777	+		GFF3483	0.86	+0.6
3,521,784	-		GFF3483	0.86	+0.5
3,521,844	+				+0.7
3,521,856	-				+0.3
3,521,883	-				+0.5
3,521,885	+				+0.3
3,521,885	+				-2.4
3,521,892	+				+0.2
3,521,892	+				-0.6
3,521,892	+				-0.8
3,521,892	+				-0.2
3,521,892	+				-0.8
3,521,892	+				+0.0
3,521,892	+				-0.4
3,521,892	+				-1.2
3,521,892	+				-0.7
3,521,892	+				+0.8
3,521,892	+				-0.2
3,521,892	+				-0.3
3,521,892	+				-0.4
3,521,892	+				-0.3
3,521,892	+				-1.4
3,521,892	+				-0.5
3,521,892	+				-1.0
3,521,893	-				+0.3
3,521,900	-				-1.2
3,521,900	-				+1.4
3,521,900	-				+1.1
3,521,900	-				-1.1
3,521,900	-				+0.2
3,521,900	-				+0.1
3,521,900	-				-0.3
3,521,900	-				+0.5
3,521,900	-				-0.7
3,521,900	-				-0.2
3,521,900	-				-0.9
3,521,946	-				-1.4
3,521,952	+				+0.4
3,521,952	+				+0.1
3,521,953	+				-1.6
3,521,953	+				+1.2
3,521,960	-				-0.2
3,521,962	-				-1.6
3,521,969	+				-1.0
3,521,974	+				-1.1
3,521,977	-				+0.7
3,521,982	-				+1.7
3,521,992	-				-0.2
3,522,013	+				-1.6
3,522,013	+				-1.6
3,522,018	+				-0.2
3,522,021	-				-0.3
3,522,026	-				-1.8
3,522,039	-				-0.1
3,522,046	-				-0.5
3,522,046	-				-1.4
3,522,046	-				-0.7
3,522,051	-				+0.4
3,522,056	+				-2.2
3,522,056	+				+0.5
3,522,064	-				-1.4
3,522,064	-				-0.8
3,522,072	+				+0.4
3,522,072	+				-2.0
3,522,080	-				-0.0
3,522,080	-				+0.4
3,522,080	-				-1.4
3,522,087	+				-1.5
3,522,087	+				+0.5
3,522,090	-				-1.8
3,522,090	-				-0.5
3,522,093	+				-1.3
3,522,095	-				+0.4
3,522,095	-				+0.8
3,522,102	-				+0.4
3,522,109	+				-0.2
3,522,117	-				-0.8
3,522,117	-				-2.0
3,522,129	-				-0.8
3,522,129	-				-0.4
3,522,139	+				+0.2
3,522,145	+				-1.5
3,522,150	+				-1.3
3,522,158	-				-2.0
3,522,189	+		GFF3484	0.12	+0.8
3,522,194	+		GFF3484	0.12	-2.4
3,522,194	+		GFF3484	0.12	-1.2
3,522,194	+		GFF3484	0.12	+0.2
3,522,194	+		GFF3484	0.12	+0.6
3,522,202	-		GFF3484	0.13	-1.7
3,522,204	+		GFF3484	0.14	+0.6
3,522,207	+		GFF3484	0.14	-1.2
3,522,212	-		GFF3484	0.15	-2.0
3,522,214	+		GFF3484	0.15	-0.3
3,522,215	-		GFF3484	0.15	+1.0
3,522,228	+		GFF3484	0.17	+0.9
3,522,256	+		GFF3484	0.20	-0.7
3,522,256	+		GFF3484	0.20	+0.3
3,522,256	+		GFF3484	0.20	+0.4
3,522,256	+		GFF3484	0.20	+0.9
3,522,256	+		GFF3484	0.20	+0.4
3,522,256	+		GFF3484	0.20	+0.2
3,522,264	-		GFF3484	0.21	-0.0
3,522,279	+		GFF3484	0.23	-0.1
3,522,279	+		GFF3484	0.23	+0.5
3,522,287	-		GFF3484	0.24	-0.4
3,522,287	-		GFF3484	0.24	+0.4
3,522,289	+		GFF3484	0.24	-2.8
3,522,289	+		GFF3484	0.24	+0.4
3,522,297	-		GFF3484	0.25	-0.5
3,522,302	-		GFF3484	0.26	-1.3
3,522,313	+		GFF3484	0.27	-0.5
3,522,319	+		GFF3484	0.28	-0.6
3,522,328	-		GFF3484	0.29	+0.0
3,522,331	+		GFF3484	0.30	+0.3
3,522,331	+		GFF3484	0.30	-0.8
3,522,332	-		GFF3484	0.30	+0.2
3,522,339	+		GFF3484	0.31	+0.2
3,522,339	-		GFF3484	0.31	-1.1
3,522,383	-		GFF3484	0.36	+1.9
3,522,388	+		GFF3484	0.37	-1.6
3,522,390	-		GFF3484	0.37	-0.2
3,522,399	+		GFF3484	0.38	+0.3
3,522,413	-		GFF3484	0.40	-0.3
3,522,445	+		GFF3484	0.44	+0.1
3,522,450	+		GFF3484	0.45	-1.2
3,522,453	-		GFF3484	0.45	-1.7
3,522,453	-		GFF3484	0.45	-1.5
3,522,453	-		GFF3484	0.45	-0.2
3,522,455	+		GFF3484	0.45	-0.3
3,522,455	+		GFF3484	0.45	-2.0
3,522,455	+		GFF3484	0.45	+1.0
3,522,455	+		GFF3484	0.45	+0.3
3,522,463	-		GFF3484	0.46	+1.4
3,522,463	-		GFF3484	0.46	-0.3
3,522,463	-		GFF3484	0.46	-0.8
3,522,475	+		GFF3484	0.48	+0.2
3,522,485	-		GFF3484	0.49	-0.8
3,522,490	-		GFF3484	0.50	-0.3
3,522,497	+		GFF3484	0.51	+0.5
3,522,497	+		GFF3484	0.51	+0.8
3,522,497	+		GFF3484	0.51	+0.2
3,522,497	+		GFF3484	0.51	-0.6
3,522,497	+		GFF3484	0.51	+0.4
3,522,497	+		GFF3484	0.51	+1.0
3,522,497	+		GFF3484	0.51	-0.3
3,522,497	+		GFF3484	0.51	+0.3
3,522,497	+		GFF3484	0.51	-1.6
3,522,505	-		GFF3484	0.52	-0.8
3,522,505	-		GFF3484	0.52	-0.1
3,522,505	-		GFF3484	0.52	-0.0
3,522,505	-		GFF3484	0.52	+0.0
3,522,507	+		GFF3484	0.52	+0.3
3,522,530	-		GFF3484	0.55	-0.0
3,522,534	+		GFF3484	0.55	-0.7
3,522,542	-		GFF3484	0.56	-2.2
3,522,562	+		GFF3484	0.59	+0.6
3,522,577	+		GFF3484	0.61	-1.0
3,522,589	+		GFF3484	0.62	-0.3
3,522,589	+		GFF3484	0.62	+1.3
3,522,589	+		GFF3484	0.62	-0.7
3,522,592	-		GFF3484	0.63	-1.8
3,522,635	-		GFF3484	0.68	-0.8
3,522,648	-		GFF3484	0.70	-1.5
3,522,669	+		GFF3484	0.72	-2.4
3,522,669	+		GFF3484	0.72	-0.3
3,522,669	+		GFF3484	0.72	-1.0
3,522,670	+		GFF3484	0.73	-2.4
3,522,704	+		GFF3484	0.77	+0.5
3,522,704	+		GFF3484	0.77	-2.0
3,522,728	+		GFF3484	0.80	-0.0
3,522,728	+		GFF3484	0.80	+0.3
3,522,728	+		GFF3484	0.80	-1.5
3,522,728	+		GFF3484	0.80	+0.1
3,522,728	+		GFF3484	0.80	-0.2
3,522,733	-		GFF3484	0.81	+1.6
3,522,736	-		GFF3484	0.81	-0.7
3,522,736	-		GFF3484	0.81	+0.5
3,522,736	-		GFF3484	0.81	-1.2
3,522,738	+		GFF3484	0.81	+0.0
3,522,743	+		GFF3484	0.82	+0.2
3,522,751	-		GFF3484	0.83	+0.1
3,522,766	+		GFF3484	0.85	+0.4
3,522,771	+		GFF3484	0.85	-1.4
3,522,779	-		GFF3484	0.86	-0.4
3,522,779	-		GFF3484	0.86	+0.0
3,522,779	-		GFF3484	0.86	-1.0
3,522,783	+		GFF3484	0.87	+0.2
3,522,783	+		GFF3484	0.87	-0.9
3,522,783	+		GFF3484	0.87	-0.3
3,522,783	+		GFF3484	0.87	-1.0
3,522,791	-		GFF3484	0.88	-0.9
3,522,791	-		GFF3484	0.88	+0.8
3,522,820	+				+1.3
3,522,828	-				-0.7
3,522,829	+				+1.1
3,522,829	+				-0.5
3,522,834	+				-0.6
3,522,842	-				+0.3
3,522,843	-				-0.7
3,522,848	-				-1.0
3,522,916	+				-0.3
3,522,926	+				-1.7
3,522,926	+				-1.0
3,522,926	+				-0.5
3,522,934	-				+0.2
3,522,935	-				+0.6
3,522,960	+				+0.2
3,522,994	+				+0.1
3,523,002	-				+0.6
3,523,002	-				+0.2
3,523,006	+				+1.7
3,523,006	+				+0.3
3,523,006	+				-1.8
3,523,012	-				-1.0
3,523,014	-				+0.8
3,523,014	-				+0.5
3,523,018	+				+0.3
3,523,042	+				-1.2
3,523,050	-				-1.2
3,523,050	-				+1.2
3,523,050	-				-0.4
3,523,058	+				+1.2
3,523,099	+				+1.1
3,523,099	+				+0.2
3,523,099	+				-0.9
3,523,099	+				+1.1
3,523,099	+				+1.2
3,523,099	+				-0.5
3,523,099	+				-0.7
3,523,099	+				-1.5
3,523,099	+				-0.8
3,523,102	-				+0.2
3,523,107	-				-1.3
3,523,107	-				-1.2
3,523,107	-				-0.3
3,523,107	-				-0.7
3,523,107	-				-1.3
3,523,107	-				+1.0
3,523,107	-				-1.3
3,523,107	-				-0.4
3,523,107	-				+1.2
3,523,107	-				-0.1
3,523,107	-				+0.0
3,523,107	-				+0.2
3,523,164	+				+0.1
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3,523,164	+				+0.0
3,523,164	+				+0.6
3,523,170	+				+0.0
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3,523,183	-				-0.9
3,523,185	-				-0.3
3,523,206	-				-1.7
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3,523,786	+				-0.4
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3,523,788	-				-0.7
3,523,788	-				+0.4
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3,523,788	-				+0.5
3,523,788	-				-0.2
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3,523,788	-				-0.7
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3,523,790	-				+1.2
3,523,795	-				+0.3
3,523,806	+				+0.8
3,523,814	-				+0.1
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3,523,828	-				-1.5
3,523,836	-				+0.0
3,523,836	-				+0.7
3,523,863	+				-1.3
3,523,863	+				-0.9