Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF346 and GFF347 overlap by 11 nucleotides GFF347 and GFF348 are separated by 70 nucleotides GFF348 and GFF349 overlap by 8 nucleotides
GFF346 - Molybdenum ABC transporter ATP-binding protein ModC, at 338,373 to 339,020
GFF346
GFF347 - Molybdenum ABC transporter permease protein ModB, at 339,010 to 339,711
GFF347
GFF348 - Capsular polysaccharide export system protein KpsS, at 339,782 to 341,068
GFF348
GFF349 - Capsule polysaccharide export protein, at 341,061 to 342,737
GFF349
Position (kb) 339
340
341
342 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 338.805 kb on + strand, within GFF346 at 338.805 kb on + strand, within GFF346 at 338.810 kb on + strand, within GFF346 at 338.810 kb on + strand, within GFF346 at 338.810 kb on + strand, within GFF346 at 338.810 kb on + strand, within GFF346 at 338.810 kb on + strand, within GFF346 at 338.810 kb on + strand, within GFF346 at 338.810 kb on + strand, within GFF346 at 338.810 kb on + strand, within GFF346 at 338.813 kb on - strand, within GFF346 at 338.813 kb on - strand, within GFF346 at 338.813 kb on - strand, within GFF346 at 338.813 kb on - strand, within GFF346 at 338.818 kb on - strand, within GFF346 at 338.818 kb on - strand, within GFF346 at 338.837 kb on - strand, within GFF346 at 338.876 kb on + strand, within GFF346 at 338.884 kb on - strand, within GFF346 at 338.884 kb on - strand, within GFF346 at 338.893 kb on + strand, within GFF346 at 338.893 kb on + strand, within GFF346 at 338.893 kb on + strand, within GFF346 at 338.901 kb on - strand, within GFF346 at 338.901 kb on - strand, within GFF346 at 338.907 kb on + strand, within GFF346 at 338.907 kb on + strand, within GFF346 at 338.907 kb on + strand, within GFF346 at 338.911 kb on - strand, within GFF346 at 338.915 kb on - strand, within GFF346 at 338.915 kb on - strand, within GFF346 at 338.915 kb on - strand, within GFF346 at 338.915 kb on - strand, within GFF346 at 338.917 kb on + strand, within GFF346 at 338.917 kb on + strand, within GFF346 at 338.934 kb on - strand, within GFF346 at 338.964 kb on + strand at 339.015 kb on + strand at 339.016 kb on - strand at 339.026 kb on + strand at 339.026 kb on - strand at 339.031 kb on + strand at 339.031 kb on + strand at 339.031 kb on + strand at 339.058 kb on - strand at 339.059 kb on - strand at 339.061 kb on + strand at 339.081 kb on - strand, within GFF347 at 339.086 kb on + strand, within GFF347 at 339.086 kb on + strand, within GFF347 at 339.132 kb on - strand, within GFF347 at 339.138 kb on + strand, within GFF347 at 339.148 kb on - strand, within GFF347 at 339.162 kb on + strand, within GFF347 at 339.164 kb on + strand, within GFF347 at 339.164 kb on + strand, within GFF347 at 339.164 kb on + strand, within GFF347 at 339.172 kb on - strand, within GFF347 at 339.172 kb on - strand, within GFF347 at 339.172 kb on - strand, within GFF347 at 339.182 kb on - strand, within GFF347 at 339.182 kb on - strand, within GFF347 at 339.204 kb on - strand, within GFF347 at 339.204 kb on - strand, within GFF347 at 339.204 kb on - strand, within GFF347 at 339.204 kb on - strand, within GFF347 at 339.204 kb on - strand, within GFF347 at 339.295 kb on - strand, within GFF347 at 339.295 kb on - strand, within GFF347 at 339.295 kb on - strand, within GFF347 at 339.295 kb on - strand, within GFF347 at 339.322 kb on + strand, within GFF347 at 339.332 kb on - strand, within GFF347 at 339.366 kb on + strand, within GFF347 at 339.433 kb on + strand, within GFF347 at 339.512 kb on - strand, within GFF347 at 339.522 kb on + strand, within GFF347 at 339.565 kb on - strand, within GFF347 at 339.587 kb on - strand, within GFF347 at 339.599 kb on + strand, within GFF347 at 339.610 kb on + strand, within GFF347 at 339.652 kb on + strand at 339.656 kb on - strand at 339.692 kb on - strand at 339.703 kb on + strand at 339.792 kb on + strand at 339.794 kb on + strand at 339.794 kb on + strand at 339.800 kb on - strand at 339.802 kb on - strand at 339.809 kb on + strand at 339.821 kb on + strand at 339.836 kb on + strand at 339.836 kb on + strand at 339.836 kb on + strand at 339.836 kb on + strand at 339.844 kb on - strand at 339.844 kb on - strand at 339.844 kb on - strand at 339.844 kb on - strand at 339.875 kb on - strand at 339.910 kb on + strand at 339.915 kb on + strand, within GFF348 at 339.953 kb on + strand, within GFF348 at 340.052 kb on + strand, within GFF348 at 340.052 kb on + strand, within GFF348 at 340.052 kb on + strand, within GFF348 at 340.052 kb on + strand, within GFF348 at 340.060 kb on - strand, within GFF348 at 340.060 kb on - strand, within GFF348 at 340.060 kb on - strand, within GFF348 at 340.060 kb on - strand, within GFF348 at 340.060 kb on - strand, within GFF348 at 340.060 kb on - strand, within GFF348 at 340.067 kb on + strand, within GFF348 at 340.067 kb on + strand, within GFF348 at 340.075 kb on - strand, within GFF348 at 340.108 kb on + strand, within GFF348 at 340.116 kb on + strand, within GFF348 at 340.116 kb on - strand, within GFF348 at 340.117 kb on - strand, within GFF348 at 340.119 kb on - strand, within GFF348 at 340.124 kb on - strand, within GFF348 at 340.126 kb on - strand, within GFF348 at 340.131 kb on + strand, within GFF348 at 340.164 kb on - strand, within GFF348 at 340.243 kb on - strand, within GFF348 at 340.313 kb on + strand, within GFF348 at 340.313 kb on + strand, within GFF348 at 340.321 kb on - strand, within GFF348 at 340.328 kb on + strand, within GFF348 at 340.331 kb on - strand, within GFF348 at 340.459 kb on - strand, within GFF348 at 340.488 kb on - strand, within GFF348 at 340.565 kb on + strand, within GFF348 at 340.565 kb on + strand, within GFF348 at 340.573 kb on - strand, within GFF348 at 340.649 kb on + strand, within GFF348 at 340.650 kb on + strand, within GFF348 at 340.657 kb on - strand, within GFF348 at 340.668 kb on - strand, within GFF348 at 340.668 kb on - strand, within GFF348 at 340.750 kb on - strand, within GFF348 at 340.781 kb on - strand, within GFF348 at 340.812 kb on - strand, within GFF348 at 340.861 kb on + strand, within GFF348 at 340.921 kb on + strand, within GFF348 at 340.955 kb on - strand at 340.988 kb on - strand at 341.183 kb on + strand at 341.205 kb on - strand at 341.300 kb on - strand, within GFF349 at 341.301 kb on - strand, within GFF349 at 341.324 kb on - strand, within GFF349 at 341.326 kb on + strand, within GFF349 at 341.326 kb on + strand, within GFF349 at 341.334 kb on - strand, within GFF349 at 341.334 kb on - strand, within GFF349 at 341.340 kb on + strand, within GFF349 at 341.349 kb on - strand, within GFF349 at 341.359 kb on - strand, within GFF349 at 341.364 kb on - strand, within GFF349 at 341.485 kb on - strand, within GFF349 at 341.498 kb on - strand, within GFF349 at 341.519 kb on - strand, within GFF349 at 341.605 kb on + strand, within GFF349 at 341.638 kb on + strand, within GFF349 at 341.657 kb on - strand, within GFF349 at 341.693 kb on - strand, within GFF349 at 341.725 kb on + strand, within GFF349 at 341.804 kb on - strand, within GFF349 at 341.804 kb on - strand, within GFF349 at 341.830 kb on - strand, within GFF349 at 341.852 kb on + strand, within GFF349 at 341.868 kb on + strand, within GFF349 at 341.919 kb on + strand, within GFF349 at 341.932 kb on - strand, within GFF349 at 341.958 kb on + strand, within GFF349 at 341.966 kb on - strand, within GFF349 at 342.014 kb on + strand, within GFF349
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with D-Glucose and Ammonium Sulfate remove 338,805 + GFF346 0.67 -0.3 338,805 + GFF346 0.67 -1.9 338,810 + GFF346 0.67 -0.6 338,810 + GFF346 0.67 +1.3 338,810 + GFF346 0.67 -1.7 338,810 + GFF346 0.67 -0.5 338,810 + GFF346 0.67 -1.3 338,810 + GFF346 0.67 +0.1 338,810 + GFF346 0.67 -0.2 338,810 + GFF346 0.67 -0.4 338,813 - GFF346 0.68 -0.9 338,813 - GFF346 0.68 -0.5 338,813 - GFF346 0.68 +0.1 338,813 - GFF346 0.68 -2.6 338,818 - GFF346 0.69 +0.6 338,818 - GFF346 0.69 -2.1 338,837 - GFF346 0.72 -1.2 338,876 + GFF346 0.78 +0.4 338,884 - GFF346 0.79 -0.2 338,884 - GFF346 0.79 -0.4 338,893 + GFF346 0.80 -0.2 338,893 + GFF346 0.80 -0.5 338,893 + GFF346 0.80 -0.3 338,901 - GFF346 0.81 -0.7 338,901 - GFF346 0.81 +0.2 338,907 + GFF346 0.82 -1.1 338,907 + GFF346 0.82 -0.3 338,907 + GFF346 0.82 -0.5 338,911 - GFF346 0.83 -0.3 338,915 - GFF346 0.84 +1.4 338,915 - GFF346 0.84 -1.7 338,915 - GFF346 0.84 -0.6 338,915 - GFF346 0.84 +1.4 338,917 + GFF346 0.84 +2.1 338,917 + GFF346 0.84 +1.0 338,934 - GFF346 0.87 +0.9 338,964 + +1.7 339,015 + -0.1 339,016 - -0.9 339,026 + -0.4 339,026 - -0.1 339,031 + +0.4 339,031 + +0.7 339,031 + +1.2 339,058 - +1.0 339,059 - +1.0 339,061 + +1.3 339,081 - GFF347 0.10 -0.2 339,086 + GFF347 0.11 +1.6 339,086 + GFF347 0.11 +0.9 339,132 - GFF347 0.17 +0.1 339,138 + GFF347 0.18 +1.0 339,148 - GFF347 0.20 -1.5 339,162 + GFF347 0.22 -0.4 339,164 + GFF347 0.22 -0.4 339,164 + GFF347 0.22 -0.8 339,164 + GFF347 0.22 -0.2 339,172 - GFF347 0.23 +1.4 339,172 - GFF347 0.23 -0.5 339,172 - GFF347 0.23 +0.2 339,182 - GFF347 0.25 -0.8 339,182 - GFF347 0.25 +0.6 339,204 - GFF347 0.28 +0.6 339,204 - GFF347 0.28 -2.7 339,204 - GFF347 0.28 +0.6 339,204 - GFF347 0.28 -0.5 339,204 - GFF347 0.28 +0.1 339,295 - GFF347 0.41 +0.8 339,295 - GFF347 0.41 -0.2 339,295 - GFF347 0.41 +0.1 339,295 - GFF347 0.41 +0.5 339,322 + GFF347 0.44 -3.2 339,332 - GFF347 0.46 -0.3 339,366 + GFF347 0.51 -0.4 339,433 + GFF347 0.60 +0.8 339,512 - GFF347 0.72 +0.6 339,522 + GFF347 0.73 -1.2 339,565 - GFF347 0.79 -1.3 339,587 - GFF347 0.82 +0.2 339,599 + GFF347 0.84 -1.3 339,610 + GFF347 0.85 -1.3 339,652 + +1.9 339,656 - -1.8 339,692 - -1.8 339,703 + -0.2 339,792 + -0.9 339,794 + -0.1 339,794 + +0.1 339,800 - +1.9 339,802 - -1.2 339,809 + -2.0 339,821 + +0.1 339,836 + +0.3 339,836 + -0.5 339,836 + +0.5 339,836 + -0.8 339,844 - -1.7 339,844 - +2.3 339,844 - +0.5 339,844 - +0.1 339,875 - -1.2 339,910 + -1.4 339,915 + GFF348 0.10 -1.3 339,953 + GFF348 0.13 -1.3 340,052 + GFF348 0.21 -0.2 340,052 + GFF348 0.21 -0.4 340,052 + GFF348 0.21 -0.5 340,052 + GFF348 0.21 +0.5 340,060 - GFF348 0.22 -0.4 340,060 - GFF348 0.22 -0.6 340,060 - GFF348 0.22 -2.2 340,060 - GFF348 0.22 -0.2 340,060 - GFF348 0.22 +1.0 340,060 - GFF348 0.22 -0.3 340,067 + GFF348 0.22 +2.4 340,067 + GFF348 0.22 +0.4 340,075 - GFF348 0.23 -0.8 340,108 + GFF348 0.25 -1.2 340,116 + GFF348 0.26 -0.4 340,116 - GFF348 0.26 -0.4 340,117 - GFF348 0.26 -0.9 340,119 - GFF348 0.26 -0.8 340,124 - GFF348 0.27 +0.1 340,126 - GFF348 0.27 +0.6 340,131 + GFF348 0.27 -1.2 340,164 - GFF348 0.30 -0.2 340,243 - GFF348 0.36 +1.8 340,313 + GFF348 0.41 +0.3 340,313 + GFF348 0.41 +1.4 340,321 - GFF348 0.42 -1.7 340,328 + GFF348 0.42 -1.1 340,331 - GFF348 0.43 -1.6 340,459 - GFF348 0.53 -1.9 340,488 - GFF348 0.55 -0.4 340,565 + GFF348 0.61 -1.8 340,565 + GFF348 0.61 -0.9 340,573 - GFF348 0.61 -0.1 340,649 + GFF348 0.67 +0.8 340,650 + GFF348 0.67 -0.7 340,657 - GFF348 0.68 +1.5 340,668 - GFF348 0.69 +0.1 340,668 - GFF348 0.69 -0.8 340,750 - GFF348 0.75 +1.4 340,781 - GFF348 0.78 -2.0 340,812 - GFF348 0.80 -1.2 340,861 + GFF348 0.84 +0.7 340,921 + GFF348 0.89 -1.8 340,955 - +2.1 340,988 - -0.0 341,183 + -1.5 341,205 - -0.9 341,300 - GFF349 0.14 +0.5 341,301 - GFF349 0.14 -0.5 341,324 - GFF349 0.16 +0.1 341,326 + GFF349 0.16 +0.6 341,326 + GFF349 0.16 +0.4 341,334 - GFF349 0.16 +0.7 341,334 - GFF349 0.16 -2.3 341,340 + GFF349 0.17 +0.3 341,349 - GFF349 0.17 -0.4 341,359 - GFF349 0.18 -1.9 341,364 - GFF349 0.18 +1.7 341,485 - GFF349 0.25 -1.9 341,498 - GFF349 0.26 -0.3 341,519 - GFF349 0.27 +0.2 341,605 + GFF349 0.32 +0.5 341,638 + GFF349 0.34 +0.8 341,657 - GFF349 0.36 +1.5 341,693 - GFF349 0.38 -0.1 341,725 + GFF349 0.40 -1.7 341,804 - GFF349 0.44 +0.7 341,804 - GFF349 0.44 -0.1 341,830 - GFF349 0.46 -0.5 341,852 + GFF349 0.47 +0.2 341,868 + GFF349 0.48 +1.4 341,919 + GFF349 0.51 -0.2 341,932 - GFF349 0.52 +1.2 341,958 + GFF349 0.53 +1.9 341,966 - GFF349 0.54 +1.4 342,014 + GFF349 0.57 +1.0
Or see this region's nucleotide sequence