Strain Fitness in Sphingobium sp. HT1-2 around GFF3473

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,512,877	-				+0.2
3,512,901	-		GFF3473	0.12	+0.4
3,512,956	-		GFF3473	0.29	-1.5
3,512,981	-		GFF3473	0.37	+1.7
3,513,018	-		GFF3473	0.48	+1.1
3,513,023	-		GFF3473	0.50	+1.0
3,513,042	-		GFF3473	0.56	+0.4
3,513,042	-		GFF3473	0.56	+1.0
3,513,073	-		GFF3473	0.65	-0.2
3,513,090	-		GFF3473	0.70	+0.4
3,513,090	-		GFF3473	0.70	-0.3
3,513,098	-		GFF3473	0.73	-0.9
3,513,100	-		GFF3473	0.73	+0.0
3,513,104	-		GFF3473	0.75	-1.7
3,513,108	-		GFF3473	0.76	-0.0
3,513,108	-		GFF3473	0.76	+0.2
3,513,162	-				+0.1
3,513,167	-				+1.6
3,513,171	-				+0.6
3,513,193	-				-0.6
3,513,201	-				-0.2
3,513,201	-				-0.7
3,513,233	-				+0.5
3,513,255	-				-1.2
3,513,286	+				-2.4
3,513,288	+				-0.1
3,513,290	+				+0.1
3,513,306	+				+1.1
3,513,306	+				-1.2
3,513,311	+				-1.1
3,513,311	+				+0.2
3,513,314	-				+0.2
3,513,314	-				-0.1
3,513,319	-				-0.3
3,513,364	+				-0.7
3,513,364	+				-0.4
3,513,372	-				+0.1
3,513,387	+				+0.5
3,513,395	-				+0.4
3,513,408	+		GFF3474	0.13	+0.3
3,513,416	-		GFF3474	0.15	-1.4
3,513,416	-		GFF3474	0.15	+1.4
3,513,429	-		GFF3474	0.19	-0.4
3,513,429	-		GFF3474	0.19	+0.7
3,513,438	+		GFF3474	0.21	-1.7
3,513,438	+		GFF3474	0.21	+0.6
3,513,438	+		GFF3474	0.21	-2.2
3,513,438	+		GFF3474	0.21	+0.0
3,513,438	+		GFF3474	0.21	-1.0
3,513,438	+		GFF3474	0.21	+1.2
3,513,438	+		GFF3474	0.21	-0.4
3,513,438	+		GFF3474	0.21	-1.6
3,513,438	+		GFF3474	0.21	+0.4
3,513,438	+		GFF3474	0.21	-0.3
3,513,438	+		GFF3474	0.21	-0.6
3,513,446	-		GFF3474	0.23	-0.1
3,513,446	-		GFF3474	0.23	-1.9
3,513,446	-		GFF3474	0.23	+1.3
3,513,446	-		GFF3474	0.23	-0.5
3,513,446	-		GFF3474	0.23	-0.0
3,513,446	-		GFF3474	0.23	-1.4
3,513,446	-		GFF3474	0.23	-1.0
3,513,446	-		GFF3474	0.23	-1.0
3,513,446	-		GFF3474	0.23	+0.2
3,513,451	-		GFF3474	0.25	+0.5
3,513,454	+		GFF3474	0.26	-0.6
3,513,455	-		GFF3474	0.26	-1.6
3,513,456	-		GFF3474	0.26	+0.4
3,513,456	-		GFF3474	0.26	-1.9
3,513,465	-		GFF3474	0.28	-2.2
3,513,472	-		GFF3474	0.30	+0.6
3,513,480	-		GFF3474	0.33	-0.3
3,513,480	-		GFF3474	0.33	+0.5
3,513,480	-		GFF3474	0.33	-0.1
3,513,500	+		GFF3474	0.38	+0.3
3,513,503	-		GFF3474	0.39	+0.2
3,513,503	-		GFF3474	0.39	+1.0
3,513,508	-		GFF3474	0.40	-0.3
3,513,508	-		GFF3474	0.40	+0.4
3,513,516	-		GFF3474	0.42	-0.5
3,513,532	+		GFF3474	0.47	+0.8
3,513,532	+		GFF3474	0.47	+0.6
3,513,535	-		GFF3474	0.47	+1.4
3,513,536	+		GFF3474	0.48	-0.2
3,513,540	-		GFF3474	0.49	+0.3
3,513,540	-		GFF3474	0.49	+0.2
3,513,544	-		GFF3474	0.50	+0.8
3,513,544	-		GFF3474	0.50	-1.2
3,513,544	-		GFF3474	0.50	+0.1
3,513,553	+		GFF3474	0.52	-1.0
3,513,581	-		GFF3474	0.60	-0.6
3,513,634	+		GFF3474	0.74	+0.5
3,513,666	+		GFF3474	0.83	-0.1
3,513,671	+		GFF3474	0.84	-0.4
3,513,671	+		GFF3474	0.84	-0.8
3,513,671	+		GFF3474	0.84	-2.0
3,513,671	+		GFF3474	0.84	+0.7
3,513,672	+		GFF3474	0.84	+0.4
3,513,672	+		GFF3474	0.84	-0.7
3,513,672	+		GFF3474	0.84	+1.1
3,513,672	+		GFF3474	0.84	-1.5
3,513,672	+		GFF3474	0.84	+0.2
3,513,672	+		GFF3474	0.84	-0.6
3,513,672	+		GFF3474	0.84	-1.3
3,513,672	+		GFF3474	0.84	+0.2
3,513,672	+		GFF3474	0.84	+2.0
3,513,672	+		GFF3474	0.84	-1.2
3,513,672	+		GFF3474	0.84	+0.7
3,513,672	+		GFF3474	0.84	+0.3
3,513,672	+		GFF3474	0.84	+0.5
3,513,672	+		GFF3474	0.84	+1.0
3,513,672	+		GFF3474	0.84	-1.6
3,513,672	+		GFF3474	0.84	+0.6
3,513,672	+		GFF3474	0.84	-0.4
3,513,672	+		GFF3474	0.84	-0.5
3,513,674	-		GFF3474	0.85	+0.2
3,513,677	-		GFF3474	0.85	-1.8
3,513,679	-		GFF3474	0.86	-0.5
3,513,680	-		GFF3474	0.86	+0.2
3,513,680	-		GFF3474	0.86	-0.1
3,513,680	-		GFF3474	0.86	+0.1
3,513,680	-		GFF3474	0.86	+0.4
3,513,680	-		GFF3474	0.86	-0.2
3,513,680	-		GFF3474	0.86	-0.5
3,513,680	-		GFF3474	0.86	-0.4
3,513,680	-		GFF3474	0.86	+0.5
3,513,680	-		GFF3474	0.86	-0.5
3,513,680	-		GFF3474	0.86	-1.6
3,513,680	-		GFF3474	0.86	-2.1
3,513,680	-		GFF3474	0.86	+0.6
3,513,680	-		GFF3474	0.86	+0.4
3,513,680	-		GFF3474	0.86	-2.0
3,513,680	-		GFF3474	0.86	+1.5
3,513,680	-		GFF3474	0.86	+0.0
3,513,680	-		GFF3474	0.86	-0.2
3,513,680	-		GFF3474	0.86	-0.2
3,513,680	-		GFF3474	0.86	-0.2
3,513,680	-		GFF3474	0.86	-0.6
3,513,680	-		GFF3474	0.86	+0.4
3,513,680	-		GFF3474	0.86	+0.0
3,513,680	-		GFF3474	0.86	+0.0
3,513,680	-		GFF3474	0.86	+0.7
3,513,680	-		GFF3474	0.86	-0.9
3,513,687	+		GFF3474	0.88	+0.7
3,513,692	+		GFF3474	0.90	-2.2
3,513,695	-				-1.6
3,513,697	+				-0.4
3,513,697	+				-1.2
3,513,697	+				+0.5
3,513,697	+				-1.6
3,513,697	+				+0.2
3,513,700	-				-0.8
3,513,700	-				-0.9
3,513,700	-				-0.8
3,513,705	-				+0.7
3,513,705	-				+0.8
3,513,705	-				-0.3
3,513,705	-				+0.1
3,513,705	-				-0.6
3,513,705	-				+0.7
3,513,705	-				+0.4
3,513,705	-				+0.5
3,513,707	+				-1.2
3,513,707	+				-0.2
3,513,707	+				-1.1
3,513,707	+				+0.9
3,513,707	+				+2.0
3,513,707	+				-1.6
3,513,707	+				-0.7
3,513,712	+				+0.5
3,513,713	-				+0.5
3,513,715	-				+1.1
3,513,715	-				+0.7
3,513,715	-				-1.7
3,513,715	-				+1.2
3,513,715	-				+0.2
3,513,715	-				+0.8
3,513,715	-				-1.0
3,513,715	-				-0.2
3,513,720	-				-0.3
3,513,727	+				-0.0
3,513,735	-				-0.2
3,513,735	-				-0.4
3,513,770	-		GFF3475	0.15	+0.2
3,513,777	+		GFF3475	0.19	-2.1
3,513,828	+		GFF3475	0.46	-0.7
3,513,834	+		GFF3475	0.49	+0.9
3,513,835	-		GFF3475	0.49	-0.9
3,513,836	-		GFF3475	0.50	+0.4
3,513,860	+		GFF3475	0.62	+0.7
3,513,860	+		GFF3475	0.62	+1.0
3,513,860	+		GFF3475	0.62	-1.5
3,513,865	+		GFF3475	0.65	+0.9
3,513,865	+		GFF3475	0.65	-0.0
3,513,868	-		GFF3475	0.67	-1.0
3,513,868	-		GFF3475	0.67	+0.3
3,513,868	-		GFF3475	0.67	-0.0
3,513,870	+		GFF3475	0.68	-0.4
3,513,873	-		GFF3475	0.69	+1.7
3,513,875	+		GFF3475	0.70	-1.1
3,513,878	-		GFF3475	0.72	+0.1
3,513,878	-		GFF3475	0.72	-0.6
3,513,883	-		GFF3475	0.75	+0.2
3,513,888	-		GFF3475	0.77	-1.3
3,513,893	-		GFF3475	0.80	+0.8
3,513,903	-		GFF3475	0.85	-0.6
3,514,004	+				-1.4
3,514,034	+				+0.9
3,514,042	+				-0.0
3,514,044	+				+0.6
3,514,044	+				-0.0
3,514,044	-				+1.1
3,514,044	-				-0.3
3,514,048	+				-1.7
3,514,052	-				+0.5
3,514,069	+				-0.2
3,514,069	+				-0.2
3,514,071	+				-1.1
3,514,077	-				+0.0
3,514,077	-				+0.6
3,514,077	-				-1.6
3,514,077	-				+0.4
3,514,077	-				-1.7
3,514,077	-				+0.0
3,514,121	+				-1.6
3,514,121	+				-2.0
3,514,134	+				+0.2
3,514,140	+				+0.4