Strain Fitness in Sphingobium sp. HT1-2 around GFF3396

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,438,013	-		GFF3395	0.69	-1.4
3,438,014	+		GFF3395	0.69	+0.8
3,438,022	+		GFF3395	0.69	-0.5
3,438,022	+		GFF3395	0.69	+1.1
3,438,041	-		GFF3395	0.70	-0.6
3,438,058	-		GFF3395	0.71	+0.6
3,438,075	+		GFF3395	0.72	-0.7
3,438,075	+		GFF3395	0.72	-2.0
3,438,077	+		GFF3395	0.72	-0.1
3,438,077	+		GFF3395	0.72	+0.2
3,438,093	+		GFF3395	0.72	+0.4
3,438,112	+		GFF3395	0.73	-0.5
3,438,112	+		GFF3395	0.73	+0.9
3,438,112	+		GFF3395	0.73	-0.6
3,438,120	-		GFF3395	0.73	+0.5
3,438,120	-		GFF3395	0.73	-0.3
3,438,120	-		GFF3395	0.73	+0.8
3,438,120	-		GFF3395	0.73	+0.7
3,438,130	+		GFF3395	0.74	-0.6
3,438,130	+		GFF3395	0.74	+0.2
3,438,130	+		GFF3395	0.74	-0.2
3,438,130	-		GFF3395	0.74	+0.7
3,438,142	-		GFF3395	0.74	-1.1
3,438,142	-		GFF3395	0.74	-1.5
3,438,168	+		GFF3395	0.75	+0.3
3,438,176	-		GFF3395	0.76	-0.1
3,438,176	-		GFF3395	0.76	-0.9
3,438,176	-		GFF3395	0.76	-0.9
3,438,176	-		GFF3395	0.76	+0.7
3,438,239	+		GFF3395	0.78	+0.6
3,438,261	+		GFF3395	0.79	-1.6
3,438,269	-		GFF3395	0.80	+1.1
3,438,315	+		GFF3395	0.81	-1.9
3,438,315	+		GFF3395	0.81	+0.4
3,438,323	-		GFF3395	0.82	-1.5
3,438,323	-		GFF3395	0.82	+0.1
3,438,323	-		GFF3395	0.82	+0.1
3,438,325	+		GFF3395	0.82	+1.0
3,438,325	+		GFF3395	0.82	-0.2
3,438,344	+		GFF3395	0.83	-1.3
3,438,351	+		GFF3395	0.83	+1.2
3,438,352	-		GFF3395	0.83	-0.5
3,438,374	-		GFF3395	0.84	-0.3
3,438,415	+		GFF3395	0.86	-0.8
3,438,415	+		GFF3395	0.86	-0.9
3,438,420	+		GFF3395	0.86	+1.0
3,438,423	-		GFF3395	0.86	-0.1
3,438,423	-		GFF3395	0.86	-0.5
3,438,425	+		GFF3395	0.86	+1.6
3,438,435	+		GFF3395	0.86	-0.8
3,438,435	+		GFF3395	0.86	-0.1
3,438,437	+		GFF3395	0.86	-0.0
3,438,437	+		GFF3395	0.86	+0.4
3,438,442	+		GFF3395	0.87	-0.1
3,438,445	-		GFF3395	0.87	+0.1
3,438,445	-		GFF3395	0.87	-1.5
3,438,445	-		GFF3395	0.87	-0.8
3,438,445	-		GFF3395	0.87	+0.7
3,438,450	-		GFF3395	0.87	+1.0
3,438,495	+		GFF3395	0.89	-0.1
3,438,495	+		GFF3395	0.89	+1.0
3,438,517	-		GFF3395	0.90	-0.2
3,438,517	-		GFF3395	0.90	+0.9
3,438,538	-				+0.6
3,438,552	+				-1.5
3,438,554	+				+0.0
3,438,563	-				+1.5
3,438,568	+				+1.4
3,438,580	-				-0.4
3,438,609	-				-0.7
3,438,619	-				+0.8
3,438,633	+				-0.0
3,438,633	+				-1.1
3,438,641	-				+0.0
3,438,641	-				-0.5
3,438,641	-				-1.3
3,438,661	+				+0.2
3,438,663	+				+1.5
3,438,671	-				-1.6
3,438,672	+				-1.4
3,438,680	-				+0.2
3,438,695	+				+0.2
3,438,716	-				-0.4
3,438,725	-				+1.4
3,438,737	-				-1.2
3,438,738	+				+1.1
3,438,740	+				+1.0
3,438,748	-				-0.7
3,438,772	-				-0.8
3,438,772	-				+1.3
3,438,790	-				+1.2
3,438,800	+				-0.0
3,438,800	+				+1.4
3,438,800	+				-0.9
3,438,800	+				+0.9
3,438,813	-				+1.2
3,438,818	-				+1.2
3,438,826	-				+1.1
3,438,826	-				-0.1
3,438,827	-				+0.4
3,438,865	+				+0.4
3,438,871	+				-1.6
3,438,893	+				+0.1
3,438,893	+				+0.1
3,438,898	+				+0.4
3,438,898	+				+0.7
3,438,898	+				-0.4
3,438,901	-				+0.5
3,438,906	-				-0.2
3,438,906	-				-0.2
3,438,955	-				-0.3
3,438,977	+				-1.6
3,438,977	+				+0.7
3,438,991	+				+1.1
3,438,996	+				+1.8
3,438,999	-				+0.1
3,439,001	+				+1.4
3,439,001	+				+0.0
3,439,001	+				-0.3
3,439,009	-				-0.3
3,439,009	-				-0.8
3,439,013	+				-0.1
3,439,013	+				+2.5
3,439,028	+				-2.3
3,439,028	+				+1.3
3,439,043	+				+1.0
3,439,043	+				+0.2
3,439,048	+				+0.7
3,439,120	-				-0.6
3,439,130	-				-0.2
3,439,136	+				-0.6
3,439,150	+				-0.6
3,439,159	+				+0.3
3,439,165	+				+0.7
3,439,167	-		GFF3396	0.10	+1.6
3,439,172	-		GFF3396	0.10	+0.7
3,439,179	+		GFF3396	0.11	+0.2
3,439,205	+		GFF3396	0.12	-0.9
3,439,205	+		GFF3396	0.12	-1.2
3,439,209	-		GFF3396	0.13	+0.9
3,439,222	+		GFF3396	0.13	+1.0
3,439,238	+		GFF3396	0.14	+1.0
3,439,245	-		GFF3396	0.15	+0.1
3,439,246	-		GFF3396	0.15	-0.6
3,439,246	-		GFF3396	0.15	-0.0
3,439,251	-		GFF3396	0.15	-1.9
3,439,259	-		GFF3396	0.16	+1.6
3,439,260	+		GFF3396	0.16	+1.4
3,439,272	+		GFF3396	0.17	+0.0
3,439,282	-		GFF3396	0.17	+1.4
3,439,282	-		GFF3396	0.17	-0.6
3,439,300	+		GFF3396	0.18	+0.1
3,439,306	+		GFF3396	0.19	-0.1
3,439,306	+		GFF3396	0.19	-0.4
3,439,313	+		GFF3396	0.19	-0.4
3,439,314	-		GFF3396	0.19	-0.9
3,439,319	+		GFF3396	0.19	+0.3
3,439,321	-		GFF3396	0.20	-1.6
3,439,321	-		GFF3396	0.20	+0.3
3,439,356	+		GFF3396	0.22	+1.2
3,439,356	+		GFF3396	0.22	+0.1
3,439,373	+		GFF3396	0.23	+0.4
3,439,377	+		GFF3396	0.23	+1.2
3,439,382	+		GFF3396	0.23	+1.1
3,439,382	+		GFF3396	0.23	+1.3
3,439,392	-		GFF3396	0.24	+0.6
3,439,411	-		GFF3396	0.25	-0.6
3,439,426	+		GFF3396	0.26	+0.9
3,439,426	+		GFF3396	0.26	-2.3
3,439,431	+		GFF3396	0.26	-0.5
3,439,434	-		GFF3396	0.27	+0.0
3,439,437	+		GFF3396	0.27	+2.2
3,439,437	+		GFF3396	0.27	+0.4
3,439,442	+		GFF3396	0.27	+0.7
3,439,444	+		GFF3396	0.27	+0.2
3,439,445	-		GFF3396	0.27	+0.8
3,439,459	-		GFF3396	0.28	-1.8
3,439,466	-		GFF3396	0.29	+1.2
3,439,468	+		GFF3396	0.29	+0.1
3,439,468	+		GFF3396	0.29	+1.4
3,439,497	-		GFF3396	0.30	-0.7
3,439,502	-		GFF3396	0.31	-0.4
3,439,518	+		GFF3396	0.32	+0.6
3,439,521	-		GFF3396	0.32	+0.8
3,439,535	-		GFF3396	0.33	+0.8
3,439,536	+		GFF3396	0.33	+0.1
3,439,586	-		GFF3396	0.36	+1.0
3,439,587	+		GFF3396	0.36	+0.2
3,439,595	+		GFF3396	0.37	-0.6
3,439,595	+		GFF3396	0.37	+1.6
3,439,595	-		GFF3396	0.37	-0.5
3,439,602	+		GFF3396	0.37	+0.5
3,439,602	+		GFF3396	0.37	-0.2
3,439,603	-		GFF3396	0.37	-0.0
3,439,607	+		GFF3396	0.37	-0.6
3,439,607	+		GFF3396	0.37	-0.0
3,439,623	+		GFF3396	0.38	-1.2
3,439,630	+		GFF3396	0.39	+0.2
3,439,631	-		GFF3396	0.39	-0.1
3,439,638	-		GFF3396	0.39	+0.9
3,439,638	-		GFF3396	0.39	-1.6
3,439,677	+		GFF3396	0.42	+0.5
3,439,678	+		GFF3396	0.42	+0.7
3,439,678	+		GFF3396	0.42	+1.1
3,439,683	+		GFF3396	0.42	+2.0
3,439,686	-		GFF3396	0.42	+1.0
3,439,687	+		GFF3396	0.42	+1.2
3,439,695	-		GFF3396	0.43	-1.6
3,439,701	+		GFF3396	0.43	-0.7
3,439,744	-		GFF3396	0.46	+0.0
3,439,757	-		GFF3396	0.47	-1.5
3,439,775	+		GFF3396	0.48	+0.6
3,439,779	-		GFF3396	0.48	+0.9
3,439,783	-		GFF3396	0.48	+0.4
3,439,807	+		GFF3396	0.50	-0.7
3,439,825	+		GFF3396	0.51	+0.5
3,439,833	-		GFF3396	0.51	+1.1
3,439,835	+		GFF3396	0.51	-1.2
3,439,839	+		GFF3396	0.52	+1.0
3,439,840	+		GFF3396	0.52	-1.9
3,439,841	+		GFF3396	0.52	+0.4
3,439,841	+		GFF3396	0.52	+0.3
3,439,847	+		GFF3396	0.52	+0.1
3,439,847	-		GFF3396	0.52	-0.4
3,439,851	+		GFF3396	0.52	+1.2
3,439,876	+		GFF3396	0.54	-0.3
3,439,879	-		GFF3396	0.54	-2.6
3,439,882	+		GFF3396	0.54	-1.9
3,439,883	+		GFF3396	0.54	-0.7
3,439,891	+		GFF3396	0.55	+0.8
3,439,897	+		GFF3396	0.55	+1.1
3,439,899	-		GFF3396	0.55	+0.9
3,439,899	-		GFF3396	0.55	-0.1
3,439,912	+		GFF3396	0.56	-0.4
3,439,912	-		GFF3396	0.56	+0.2
3,439,912	-		GFF3396	0.56	-0.3
3,439,919	+		GFF3396	0.57	+1.6
3,439,920	-		GFF3396	0.57	+0.3
3,439,927	-		GFF3396	0.57	+1.1
3,439,927	-		GFF3396	0.57	+0.5
3,439,927	-		GFF3396	0.57	+0.5
3,439,929	+		GFF3396	0.57	+0.6
3,439,929	+		GFF3396	0.57	-1.1
3,439,929	+		GFF3396	0.57	+0.8
3,439,937	-		GFF3396	0.58	+0.7
3,439,949	-		GFF3396	0.58	+0.6
3,439,974	-		GFF3396	0.60	-0.3
3,439,983	+		GFF3396	0.61	-0.9
3,439,985	+		GFF3396	0.61	-0.3
3,439,985	+		GFF3396	0.61	-0.3
3,439,986	-		GFF3396	0.61	-0.8
3,439,987	-		GFF3396	0.61	+0.8
3,439,999	-		GFF3396	0.62	+1.0
3,440,002	+		GFF3396	0.62	-1.0
3,440,010	+		GFF3396	0.62	-0.7
3,440,078	-		GFF3396	0.66	+0.0
3,440,086	-		GFF3396	0.67	+2.2
3,440,086	-		GFF3396	0.67	+0.2
3,440,086	-		GFF3396	0.67	-0.2
3,440,098	-		GFF3396	0.68	-1.3
3,440,100	+		GFF3396	0.68	+1.1
3,440,108	-		GFF3396	0.68	+0.4
3,440,108	-		GFF3396	0.68	+0.7
3,440,109	+		GFF3396	0.68	+1.0
3,440,109	+		GFF3396	0.68	+1.0
3,440,117	-		GFF3396	0.69	+0.9
3,440,124	-		GFF3396	0.69	-0.0
3,440,152	+		GFF3396	0.71	-0.8
3,440,152	+		GFF3396	0.71	-0.2
3,440,154	+		GFF3396	0.71	+1.0
3,440,159	+		GFF3396	0.71	+0.8
3,440,160	-		GFF3396	0.71	+1.2
3,440,160	-		GFF3396	0.71	-1.3
3,440,160	-		GFF3396	0.71	+0.8
3,440,160	-		GFF3396	0.71	-0.9
3,440,160	-		GFF3396	0.71	+0.1
3,440,172	-		GFF3396	0.72	+0.2
3,440,176	+		GFF3396	0.72	+0.3
3,440,183	+		GFF3396	0.73	+0.7
3,440,185	+		GFF3396	0.73	+0.7
3,440,188	-		GFF3396	0.73	-0.4
3,440,191	+		GFF3396	0.73	-0.5
3,440,226	+		GFF3396	0.76	-1.2
3,440,226	+		GFF3396	0.76	+1.8
3,440,237	+		GFF3396	0.76	+1.4
3,440,244	-		GFF3396	0.77	+0.8
3,440,267	+		GFF3396	0.78	+1.3
3,440,267	+		GFF3396	0.78	+1.1
3,440,267	+		GFF3396	0.78	-0.5
3,440,267	+		GFF3396	0.78	-0.6
3,440,267	+		GFF3396	0.78	-0.3
3,440,267	+		GFF3396	0.78	+0.3
3,440,267	+		GFF3396	0.78	+0.9
3,440,267	+		GFF3396	0.78	+1.1
3,440,269	+		GFF3396	0.78	+0.1
3,440,269	+		GFF3396	0.78	+0.5
3,440,275	-		GFF3396	0.79	+0.8
3,440,275	-		GFF3396	0.79	+2.1
3,440,275	-		GFF3396	0.79	+1.0
3,440,275	-		GFF3396	0.79	-1.2
3,440,275	-		GFF3396	0.79	+0.4
3,440,275	-		GFF3396	0.79	+0.8
3,440,277	-		GFF3396	0.79	+0.0
3,440,308	-		GFF3396	0.81	-0.1
3,440,339	-		GFF3396	0.83	-1.1
3,440,367	+		GFF3396	0.84	-0.6
3,440,387	-		GFF3396	0.86	-0.5
3,440,425	+		GFF3396	0.88	+0.2
3,440,459	+				-1.3
3,440,462	+				-0.9
3,440,462	+				+0.4
3,440,467	+				+0.7
3,440,467	+				+1.1
3,440,470	-				+0.1
3,440,472	+				+0.6
3,440,472	+				+0.7
3,440,472	+				-0.2
3,440,475	-				+0.4
3,440,480	-				+1.2
3,440,480	-				-0.2
3,440,480	-				+0.0
3,440,490	-				-2.1
3,440,507	-				-0.5
3,440,517	+				+0.6
3,440,517	+				+0.8
3,440,525	-				+1.0
3,440,525	-				+0.9
3,440,535	+				-0.1
3,440,561	-				-0.2
3,440,574	-				+0.7
3,440,580	-				+1.5
3,440,588	+				-0.5
3,440,595	+				-0.3
3,440,641	+				-0.7
3,440,649	-				-0.1
3,440,649	-				-0.2
3,440,656	+				+1.1
3,440,664	-				-0.3
3,440,677	+				+0.3
3,440,677	+				-1.5
3,440,685	+				-1.8
3,440,685	-				+0.6
3,440,686	-				-0.3
3,440,709	+				-1.9
3,440,752	-				+0.3
3,440,756	+				-0.2
3,440,766	-				+0.6
3,440,776	+				+0.8
3,440,789	+				-0.2
3,440,815	+				+0.7
3,440,825	+				+0.5
3,440,825	+				+0.6
3,440,825	+				-0.2
3,440,826	+				+1.3
3,440,830	+				-1.2
3,440,833	-				+1.0
3,440,833	-				+0.6
3,440,852	+				-2.5
3,440,869	+				+1.7
3,440,874	+				+0.2
3,440,882	-				-0.0
3,440,884	+				+1.7
3,440,885	+				-0.8
3,440,890	+				+1.4
3,440,892	-				+0.2
3,440,892	-				+1.0
3,440,898	-				+0.6
3,440,905	+				-0.0
3,440,905	+				-1.8
3,440,905	+				+0.2
3,440,905	+				-0.1
3,440,913	-				-0.4
3,440,913	-				-0.3
3,440,920	+				-1.2
3,440,920	+				-1.5
3,440,920	+				+1.0
3,440,920	+				-2.6
3,440,920	+				+0.4
3,440,920	+				+0.5
3,440,925	-				-1.2
3,440,928	-				-1.8
3,440,928	-				+0.5
3,440,928	-				+0.3
3,440,928	-				+0.1
3,440,928	-				+0.8
3,440,928	-				-0.2
3,440,940	+				+0.3
3,440,940	+				-0.4
3,440,948	-				-0.7
3,440,948	-				+0.2
3,440,968	-				+0.1
3,440,996	-				+0.4
3,441,021	+		GFF3397	0.11	-0.8
3,441,021	+		GFF3397	0.11	+0.5
3,441,021	+		GFF3397	0.11	+0.4
3,441,021	+		GFF3397	0.11	+1.4
3,441,021	+		GFF3397	0.11	-1.3
3,441,021	+		GFF3397	0.11	+2.2
3,441,021	+		GFF3397	0.11	-0.6
3,441,021	+		GFF3397	0.11	+0.5
3,441,021	+		GFF3397	0.11	-0.1
3,441,021	+		GFF3397	0.11	-0.5
3,441,021	+		GFF3397	0.11	-0.1
3,441,021	+		GFF3397	0.11	+0.5
3,441,021	+		GFF3397	0.11	-1.6
3,441,021	+		GFF3397	0.11	+0.6
3,441,026	+		GFF3397	0.11	-0.6
3,441,028	+		GFF3397	0.11	+1.2
3,441,029	-		GFF3397	0.11	+0.9
3,441,029	-		GFF3397	0.11	+0.7
3,441,029	-		GFF3397	0.11	-0.6
3,441,029	-		GFF3397	0.11	+1.8
3,441,029	-		GFF3397	0.11	-0.2
3,441,029	-		GFF3397	0.11	-0.8
3,441,029	-		GFF3397	0.11	-1.4
3,441,029	-		GFF3397	0.11	+1.2
3,441,029	-		GFF3397	0.11	+0.8
3,441,029	-		GFF3397	0.11	-0.2
3,441,031	+		GFF3397	0.11	-0.9
3,441,034	-		GFF3397	0.12	-1.8
3,441,036	-		GFF3397	0.12	+1.1
3,441,039	-		GFF3397	0.12	-0.8
3,441,046	-		GFF3397	0.12	-0.2
3,441,047	+		GFF3397	0.12	-0.6
3,441,048	+		GFF3397	0.12	-0.0
3,441,055	-		GFF3397	0.13	+0.9
3,441,056	-		GFF3397	0.13	-1.4
3,441,060	-		GFF3397	0.13	+1.0
3,441,078	-		GFF3397	0.14	+0.4
3,441,084	-		GFF3397	0.14	-0.3
3,441,104	-		GFF3397	0.15	+0.7
3,441,108	-		GFF3397	0.16	+1.9
3,441,121	+		GFF3397	0.16	+0.4
3,441,131	+		GFF3397	0.17	+1.7
3,441,139	-		GFF3397	0.17	-0.3
3,441,195	+		GFF3397	0.20	+1.1
3,441,195	+		GFF3397	0.20	+1.0
3,441,195	+		GFF3397	0.20	+0.2
3,441,208	+		GFF3397	0.21	+1.4
3,441,215	+		GFF3397	0.21	+0.5
3,441,222	+		GFF3397	0.22	-0.5
3,441,234	+		GFF3397	0.22	-0.8
3,441,234	+		GFF3397	0.22	+1.0
3,441,234	+		GFF3397	0.22	+0.2
3,441,234	+		GFF3397	0.22	-0.7
3,441,242	-		GFF3397	0.23	+1.2
3,441,242	-		GFF3397	0.23	+0.8
3,441,242	-		GFF3397	0.23	+1.4
3,441,248	+		GFF3397	0.23	+1.2
3,441,256	-		GFF3397	0.23	+0.8
3,441,268	-		GFF3397	0.24	-0.3
3,441,301	+		GFF3397	0.26	-1.2
3,441,301	+		GFF3397	0.26	-0.5
3,441,337	+		GFF3397	0.28	+0.2
3,441,342	+		GFF3397	0.28	-1.1
3,441,347	+		GFF3397	0.28	+0.2
3,441,348	+		GFF3397	0.28	-0.3
3,441,348	+		GFF3397	0.28	+0.6
3,441,348	+		GFF3397	0.28	+1.2
3,441,348	+		GFF3397	0.28	+0.0
3,441,348	+		GFF3397	0.28	-0.2
3,441,356	-		GFF3397	0.29	+0.6
3,441,356	-		GFF3397	0.29	+0.8
3,441,360	-		GFF3397	0.29	-0.8
3,441,377	+		GFF3397	0.30	+0.4
3,441,385	-		GFF3397	0.30	-0.8
3,441,391	-		GFF3397	0.31	+0.6
3,441,391	-		GFF3397	0.31	-0.5
3,441,399	+		GFF3397	0.31	+1.0
3,441,404	+		GFF3397	0.31	-0.3
3,441,463	+		GFF3397	0.35	+0.7
3,441,477	-		GFF3397	0.35	+0.6
3,441,490	+		GFF3397	0.36	-1.2
3,441,496	+		GFF3397	0.36	-0.9
3,441,498	-		GFF3397	0.36	-0.3
3,441,500	-		GFF3397	0.36	+0.3
3,441,500	-		GFF3397	0.36	+0.4
3,441,500	-		GFF3397	0.36	-0.7
3,441,524	-		GFF3397	0.38	+0.4
3,441,526	-		GFF3397	0.38	-0.6
3,441,541	-		GFF3397	0.39	+0.2
3,441,580	+		GFF3397	0.41	+1.5
3,441,584	+		GFF3397	0.41	+0.8
3,441,619	-		GFF3397	0.43	+1.4