Strain Fitness in Sphingobium sp. HT1-2 around GFF3379

Experiment: EMM_noCarbon with D-Glucose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with D-Glucose and Ammonium Sulfate
3,420,465	-		GFF3377	0.53	+0.5
3,420,497	+		GFF3377	0.64	+1.4
3,420,505	-		GFF3377	0.66	-1.6
3,420,505	-		GFF3377	0.66	+0.4
3,420,602	+				+1.0
3,420,602	+				+0.6
3,420,602	+				+0.9
3,420,602	+				-0.3
3,420,602	+				+0.8
3,420,602	+				-0.5
3,420,602	+				+0.6
3,420,604	+				+1.2
3,420,604	+				-0.7
3,420,605	-				-0.2
3,420,605	-				+1.1
3,420,610	-				+0.4
3,420,610	-				+0.4
3,420,610	-				-0.1
3,420,610	-				+0.0
3,420,610	-				-0.5
3,420,610	-				-1.7
3,420,610	-				-1.5
3,420,610	-				+0.2
3,420,612	-				+0.2
3,420,617	-				+1.4
3,420,649	+				-1.1
3,420,662	-				+0.3
3,420,671	+				+0.8
3,420,671	+				+0.9
3,420,676	+				+0.4
3,420,676	+				-2.1
3,420,676	+				+0.8
3,420,679	-				-0.4
3,420,680	-				+0.1
3,420,682	+				+0.6
3,420,682	-				+0.2
3,420,684	-				-0.7
3,420,684	-				-1.8
3,420,684	-				+1.1
3,420,695	-				+0.7
3,420,763	+				+0.4
3,420,765	+				-0.5
3,420,772	-				+0.0
3,420,772	-				+0.4
3,420,773	-				+0.5
3,420,775	+				-0.0
3,420,783	-				+1.4
3,420,783	-				+0.1
3,420,785	+				+0.2
3,420,785	+				+0.1
3,420,788	-				-0.3
3,420,788	-				-0.4
3,420,788	-				+0.6
3,420,790	+				+0.7
3,420,790	+				+0.2
3,420,790	+				-0.2
3,420,790	+				+0.6
3,420,790	+				+0.3
3,420,790	+				-0.4
3,420,790	+				-0.4
3,420,790	+				-1.9
3,420,790	+				+0.5
3,420,790	+				+0.2
3,420,790	+				+0.6
3,420,790	+				-0.3
3,420,790	+				+0.7
3,420,790	+				+0.1
3,420,791	+				+0.2
3,420,791	+				-0.4
3,420,798	-				-1.5
3,420,798	-				-0.3
3,420,798	-				-0.2
3,420,798	-				-0.7
3,420,798	-				-0.4
3,420,798	-				-0.2
3,420,799	-				+0.1
3,420,824	-				+0.7
3,420,856	+				+0.1
3,420,864	-		GFF3378	0.11	+1.2
3,420,987	-		GFF3378	0.50	-2.4
3,421,012	-		GFF3378	0.58	+1.2
3,421,012	-		GFF3378	0.58	+1.2
3,421,026	-		GFF3378	0.62	-0.1
3,421,026	-		GFF3378	0.62	+0.2
3,421,028	+		GFF3378	0.63	+1.2
3,421,036	-		GFF3378	0.65	+1.0
3,421,036	-		GFF3378	0.65	-1.0
3,421,059	+		GFF3378	0.72	+0.4
3,421,067	-		GFF3378	0.75	+0.9
3,421,140	-				+1.2
3,421,154	+				+1.5
3,421,160	+				-0.3
3,421,160	+				+0.3
3,421,160	+				+2.1
3,421,182	-				+0.3
3,421,195	-				-0.1
3,421,209	+				-0.3
3,421,210	-				-0.5
3,421,215	-				+0.2
3,421,215	-				+0.2
3,421,217	-				-0.4
3,421,217	-				-0.3
3,421,217	-				-0.4
3,421,217	-				-1.1
3,421,224	+				-0.9
3,421,231	+				+0.6
3,421,231	+				+0.7
3,421,231	+				-0.9
3,421,232	-				-1.6
3,421,290	+				+1.3
3,421,405	+				+0.7
3,421,422	-				+0.0
3,421,458	+				+0.9
3,421,466	-				-2.2
3,421,483	-		GFF3379	0.18	+1.0
3,421,483	-		GFF3379	0.18	+0.5
3,421,517	+		GFF3379	0.33	+0.3
3,421,523	-		GFF3379	0.36	-0.5
3,421,525	-		GFF3379	0.36	+0.9
3,421,525	-		GFF3379	0.36	+0.5
3,421,525	-		GFF3379	0.36	+1.0
3,421,527	+		GFF3379	0.37	+1.0
3,421,527	+		GFF3379	0.37	-0.1
3,421,527	+		GFF3379	0.37	-0.5
3,421,527	+		GFF3379	0.37	-1.8
3,421,535	+		GFF3379	0.41	-0.9
3,421,535	-		GFF3379	0.41	+0.1
3,421,535	-		GFF3379	0.41	-1.8
3,421,535	-		GFF3379	0.41	+0.1
3,421,535	-		GFF3379	0.41	-0.3
3,421,535	-		GFF3379	0.41	+0.3
3,421,550	-		GFF3379	0.48	-1.2
3,421,582	+		GFF3379	0.62	+0.3
3,421,605	+		GFF3379	0.73	+0.7
3,421,609	+		GFF3379	0.74	+0.1
3,421,624	-		GFF3379	0.81	-0.2
3,421,664	-				-1.5
3,421,664	-				-0.5
3,421,665	+				-0.4
3,421,666	+				+0.6
3,421,666	+				+0.2
3,421,674	-				-0.4
3,421,674	-				+0.2
3,421,705	+				-0.0
3,421,710	+				+0.6
3,421,743	+				+0.3
3,421,757	-		GFF3380	0.12	+0.8
3,421,784	+		GFF3380	0.23	-1.5
3,421,784	+		GFF3380	0.23	-1.1
3,421,784	+		GFF3380	0.23	-1.9
3,421,792	-		GFF3380	0.27	-2.2
3,421,792	-		GFF3380	0.27	+0.9
3,421,800	-		GFF3380	0.30	+0.6
3,421,815	+		GFF3380	0.36	+0.3
3,421,815	+		GFF3380	0.36	-0.2
3,421,829	-		GFF3380	0.42	+1.1
3,421,829	-		GFF3380	0.42	+0.7
3,421,830	+		GFF3380	0.42	-0.6
3,421,837	-		GFF3380	0.45	-0.2
3,421,900	-		GFF3380	0.72	+0.4
3,421,915	+		GFF3380	0.78	-0.4
3,421,946	+				-0.8
3,421,964	-				-1.2
3,421,970	-				+0.6
3,421,984	-				-0.5
3,421,998	+				+1.0
3,421,998	+				+1.1
3,422,006	+				+0.5
3,422,006	-				+0.4
3,422,006	-				-0.2
3,422,006	-				-1.4
3,422,016	-				-1.6
3,422,016	-				+0.6
3,422,016	-				-2.5
3,422,017	+				-1.4
3,422,025	-				-0.9
3,422,025	-				-0.4
3,422,025	-				+0.1
3,422,025	-				+0.1
3,422,026	-				+1.3
3,422,031	+				+0.2
3,422,065	-				+1.5
3,422,135	+				-0.2
3,422,137	-				+0.2
3,422,147	+				+0.7
3,422,148	+				+1.5
3,422,169	+				+0.8
3,422,181	+				-0.1
3,422,181	+				+0.4
3,422,183	+				+0.8
3,422,189	-				+0.7
3,422,201	+				+0.3
3,422,201	+				-0.8
3,422,201	+				-0.6
3,422,206	+				+0.8
3,422,209	-		GFF3381	0.11	+0.1
3,422,209	-		GFF3381	0.11	-0.4
3,422,209	-		GFF3381	0.11	+1.7
3,422,209	-		GFF3381	0.11	+0.7
3,422,209	-		GFF3381	0.11	-0.1
3,422,223	+		GFF3381	0.19	-0.9
3,422,228	+		GFF3381	0.22	+1.2
3,422,228	+		GFF3381	0.22	+1.7
3,422,229	-		GFF3381	0.23	+0.7
3,422,231	-		GFF3381	0.24	+0.7
3,422,231	-		GFF3381	0.24	+0.4
3,422,236	-		GFF3381	0.27	-0.1
3,422,241	+		GFF3381	0.30	-0.0
3,422,241	+		GFF3381	0.30	-0.2
3,422,247	-		GFF3381	0.34	-0.1
3,422,249	-		GFF3381	0.35	-0.2
3,422,263	+		GFF3381	0.44	+0.5
3,422,263	+		GFF3381	0.44	+1.7
3,422,263	+		GFF3381	0.44	+0.8
3,422,268	+		GFF3381	0.47	+1.4
3,422,268	+		GFF3381	0.47	+0.8
3,422,268	+		GFF3381	0.47	-0.8
3,422,268	+		GFF3381	0.47	-0.2
3,422,271	-		GFF3381	0.48	-0.2
3,422,271	-		GFF3381	0.48	-0.1
3,422,278	+		GFF3381	0.53	+0.7
3,422,278	+		GFF3381	0.53	+0.5
3,422,306	-		GFF3381	0.70	+0.8
3,422,319	+		GFF3381	0.78	+0.1
3,422,356	+				+0.2
3,422,364	+				+0.1
3,422,366	+				+1.1
3,422,366	+				+1.5
3,422,374	-				+1.0
3,422,374	-				+1.2
3,422,374	-				+0.3
3,422,374	-				-0.7
3,422,400	+				-0.7
3,422,400	+				+0.4
3,422,408	-				-2.0
3,422,441	+				-1.0
3,422,453	-				-1.7
3,422,470	-				-0.7
3,422,472	-				+1.3
3,422,484	-				+0.9
3,422,561	+				+1.1
3,422,569	-				+0.7
3,422,569	-				-0.4
3,422,577	+				-0.3
3,422,577	+				-1.1
3,422,587	+				+0.4
3,422,587	+				-0.2
3,422,595	-				+0.2
3,422,616	-				+0.7
3,422,616	-				+0.3
3,422,642	-		GFF3382	0.13	-0.8
3,422,651	+		GFF3382	0.15	-1.0
3,422,664	-		GFF3382	0.18	+1.4